Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19170 and AO356_19175 overlap by 4 nucleotides AO356_19175 and AO356_19180 are separated by 2 nucleotides AO356_19180 and AO356_19185 are separated by 72 nucleotides
AO356_19170: AO356_19170 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 4,304,453 to 4,305,508
_19170
AO356_19175: AO356_19175 - alpha-ribazole phosphatase, at 4,305,505 to 4,306,080
_19175
AO356_19180: AO356_19180 - cobalamin synthase, at 4,306,083 to 4,306,814
_19180
AO356_19185: AO356_19185 - MarR family transcriptional regulator, at 4,306,887 to 4,307,291
_19185
Position (kb) 4305
4306
4307 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4305.200 kb on + strand, within AO356_19170 at 4305.200 kb on + strand, within AO356_19170 at 4305.200 kb on + strand, within AO356_19170 at 4305.201 kb on - strand, within AO356_19170 at 4305.201 kb on - strand, within AO356_19170 at 4305.201 kb on - strand, within AO356_19170 at 4305.201 kb on - strand, within AO356_19170 at 4305.201 kb on - strand, within AO356_19170 at 4305.253 kb on + strand, within AO356_19170 at 4305.829 kb on + strand, within AO356_19175 at 4305.829 kb on + strand, within AO356_19175 at 4305.829 kb on + strand, within AO356_19175 at 4305.830 kb on - strand, within AO356_19175 at 4305.830 kb on - strand, within AO356_19175 at 4305.913 kb on + strand, within AO356_19175 at 4305.913 kb on + strand, within AO356_19175 at 4306.182 kb on + strand, within AO356_19180 at 4306.235 kb on - strand, within AO356_19180 at 4306.551 kb on + strand, within AO356_19180 at 4306.551 kb on + strand, within AO356_19180 at 4306.552 kb on - strand, within AO356_19180 at 4306.552 kb on - strand, within AO356_19180 at 4306.847 kb on + strand at 4306.847 kb on + strand at 4306.847 kb on + strand at 4306.847 kb on + strand at 4306.848 kb on - strand at 4306.848 kb on - strand at 4306.873 kb on + strand at 4306.875 kb on + strand at 4306.877 kb on + strand at 4306.877 kb on + strand at 4306.877 kb on + strand at 4306.878 kb on - strand at 4306.878 kb on - strand at 4306.947 kb on + strand, within AO356_19185 at 4306.947 kb on + strand, within AO356_19185 at 4306.948 kb on - strand, within AO356_19185 at 4306.950 kb on + strand, within AO356_19185 at 4306.950 kb on + strand, within AO356_19185 at 4306.950 kb on + strand, within AO356_19185 at 4306.951 kb on - strand, within AO356_19185 at 4306.992 kb on + strand, within AO356_19185 at 4306.993 kb on - strand, within AO356_19185 at 4306.993 kb on - strand, within AO356_19185 at 4306.993 kb on - strand, within AO356_19185 at 4306.993 kb on - strand, within AO356_19185 at 4306.993 kb on - strand, within AO356_19185 at 4307.033 kb on + strand, within AO356_19185
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 4,305,200 + AO356_19170 0.71 -1.7 4,305,200 + AO356_19170 0.71 -0.6 4,305,200 + AO356_19170 0.71 -1.5 4,305,201 - AO356_19170 0.71 -0.0 4,305,201 - AO356_19170 0.71 -0.2 4,305,201 - AO356_19170 0.71 +0.1 4,305,201 - AO356_19170 0.71 -2.2 4,305,201 - AO356_19170 0.71 -1.4 4,305,253 + AO356_19170 0.76 -0.6 4,305,829 + AO356_19175 0.56 -1.7 4,305,829 + AO356_19175 0.56 -0.6 4,305,829 + AO356_19175 0.56 -1.5 4,305,830 - AO356_19175 0.56 -1.0 4,305,830 - AO356_19175 0.56 -1.0 4,305,913 + AO356_19175 0.71 -1.2 4,305,913 + AO356_19175 0.71 -1.0 4,306,182 + AO356_19180 0.14 -0.2 4,306,235 - AO356_19180 0.21 -1.2 4,306,551 + AO356_19180 0.64 +0.4 4,306,551 + AO356_19180 0.64 -1.0 4,306,552 - AO356_19180 0.64 -1.1 4,306,552 - AO356_19180 0.64 -0.5 4,306,847 + +0.1 4,306,847 + -0.2 4,306,847 + -0.1 4,306,847 + +0.9 4,306,848 - +0.5 4,306,848 - +1.4 4,306,873 + -0.4 4,306,875 + +0.6 4,306,877 + +1.8 4,306,877 + -0.3 4,306,877 + -0.7 4,306,878 - +0.3 4,306,878 - -0.8 4,306,947 + AO356_19185 0.15 +0.4 4,306,947 + AO356_19185 0.15 +0.4 4,306,948 - AO356_19185 0.15 -0.3 4,306,950 + AO356_19185 0.16 +0.8 4,306,950 + AO356_19185 0.16 +0.9 4,306,950 + AO356_19185 0.16 -0.5 4,306,951 - AO356_19185 0.16 -0.7 4,306,992 + AO356_19185 0.26 -0.2 4,306,993 - AO356_19185 0.26 -0.8 4,306,993 - AO356_19185 0.26 +1.3 4,306,993 - AO356_19185 0.26 -0.2 4,306,993 - AO356_19185 0.26 -0.3 4,306,993 - AO356_19185 0.26 +0.4 4,307,033 + AO356_19185 0.36 -0.4
Or see this region's nucleotide sequence