Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07915 and AO356_07920 overlap by 4 nucleotides AO356_07920 and AO356_07925 are separated by 155 nucleotides AO356_07925 and AO356_07930 are separated by 154 nucleotides
AO356_07915: AO356_07915 - exodeoxyribonuclease V subunit beta, at 1,767,915 to 1,771,604
_07915
AO356_07920: AO356_07920 - exodeoxyribonuclease V subunit gamma, at 1,771,601 to 1,775,053
_07920
AO356_07925: AO356_07925 - 5S ribosomal RNA, at 1,775,209 to 1,775,324
_07925
AO356_07930: AO356_07930 - 23S ribosomal RNA, at 1,775,479 to 1,778,394
_07930
Position (kb)
1771
1772
1773
1774
1775
1776 Strain fitness (log2 ratio)
-1
0
1 at 1771.209 kb on - strand, within AO356_07915 at 1771.209 kb on - strand, within AO356_07915 at 1771.209 kb on - strand, within AO356_07915 at 1771.393 kb on - strand at 1771.782 kb on + strand at 1772.394 kb on + strand, within AO356_07920 at 1772.395 kb on - strand, within AO356_07920 at 1772.551 kb on - strand, within AO356_07920 at 1772.551 kb on - strand, within AO356_07920 at 1772.620 kb on - strand, within AO356_07920 at 1773.016 kb on + strand, within AO356_07920 at 1773.376 kb on - strand, within AO356_07920 at 1773.790 kb on + strand, within AO356_07920 at 1774.066 kb on - strand, within AO356_07920 at 1774.066 kb on - strand, within AO356_07920 at 1774.066 kb on - strand, within AO356_07920 at 1774.195 kb on - strand, within AO356_07920 at 1774.195 kb on - strand, within AO356_07920 at 1775.081 kb on + strand at 1775.094 kb on + strand at 1775.095 kb on - strand at 1775.095 kb on - strand at 1775.142 kb on + strand at 1775.142 kb on + strand at 1775.142 kb on + strand at 1775.142 kb on + strand at 1775.142 kb on + strand at 1775.143 kb on - strand at 1775.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 1,771,209 - AO356_07915 0.89 -0.5 1,771,209 - AO356_07915 0.89 +0.6 1,771,209 - AO356_07915 0.89 +0.1 1,771,393 - +0.8 1,771,782 + +0.1 1,772,394 + AO356_07920 0.23 +0.5 1,772,395 - AO356_07920 0.23 +0.9 1,772,551 - AO356_07920 0.28 -1.2 1,772,551 - AO356_07920 0.28 -0.2 1,772,620 - AO356_07920 0.30 -0.4 1,773,016 + AO356_07920 0.41 -0.5 1,773,376 - AO356_07920 0.51 -1.1 1,773,790 + AO356_07920 0.63 -0.5 1,774,066 - AO356_07920 0.71 -0.1 1,774,066 - AO356_07920 0.71 -1.5 1,774,066 - AO356_07920 0.71 -0.6 1,774,195 - AO356_07920 0.75 -0.6 1,774,195 - AO356_07920 0.75 +0.0 1,775,081 + -0.4 1,775,094 + +0.1 1,775,095 - +0.3 1,775,095 - +0.3 1,775,142 + +0.9 1,775,142 + +0.3 1,775,142 + +0.2 1,775,142 + +0.3 1,775,142 + +0.1 1,775,143 - +0.6 1,775,175 - -0.1
Or see this region's nucleotide sequence