Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02265

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02260 and AO356_02265 are separated by 168 nucleotidesAO356_02265 and AO356_02270 are separated by 168 nucleotides AO356_02260: AO356_02260 - citrate-proton symporter, at 484,739 to 486,037 _02260 AO356_02265: AO356_02265 - glyceraldehyde-3-phosphate dehydrogenase, at 486,206 to 487,669 _02265 AO356_02270: AO356_02270 - transcription-repair coupling factor, at 487,838 to 491,287 _02270 Position (kb) 486 487 488Strain fitness (log2 ratio) -3 -2 -1 0 1at 485.449 kb on + strand, within AO356_02260at 485.449 kb on + strand, within AO356_02260at 485.450 kb on - strand, within AO356_02260at 485.450 kb on - strand, within AO356_02260at 485.450 kb on - strand, within AO356_02260at 485.470 kb on + strand, within AO356_02260at 485.470 kb on + strand, within AO356_02260at 485.470 kb on + strand, within AO356_02260at 485.483 kb on + strand, within AO356_02260at 485.484 kb on - strand, within AO356_02260at 485.484 kb on - strand, within AO356_02260at 485.500 kb on + strand, within AO356_02260at 485.500 kb on + strand, within AO356_02260at 485.501 kb on - strand, within AO356_02260at 485.501 kb on - strand, within AO356_02260at 485.501 kb on - strand, within AO356_02260at 485.638 kb on - strand, within AO356_02260at 485.676 kb on - strand, within AO356_02260at 485.753 kb on + strand, within AO356_02260at 485.763 kb on - strand, within AO356_02260at 485.811 kb on + strand, within AO356_02260at 485.811 kb on + strand, within AO356_02260at 485.837 kb on + strand, within AO356_02260at 485.837 kb on + strand, within AO356_02260at 485.837 kb on + strand, within AO356_02260at 485.884 kb on + strand, within AO356_02260at 485.884 kb on + strand, within AO356_02260at 485.884 kb on + strand, within AO356_02260at 485.884 kb on + strand, within AO356_02260at 485.885 kb on - strand, within AO356_02260at 485.888 kb on + strand, within AO356_02260at 485.888 kb on + strand, within AO356_02260at 485.888 kb on + strand, within AO356_02260at 485.889 kb on - strand, within AO356_02260at 486.038 kb on + strandat 486.039 kb on - strandat 486.039 kb on - strandat 486.090 kb on + strandat 486.090 kb on + strandat 486.090 kb on + strandat 486.091 kb on - strandat 486.091 kb on - strandat 486.091 kb on - strandat 486.091 kb on - strandat 486.300 kb on + strandat 486.300 kb on + strandat 486.301 kb on - strandat 486.301 kb on - strandat 486.445 kb on - strand, within AO356_02265at 486.454 kb on - strand, within AO356_02265at 486.454 kb on - strand, within AO356_02265at 486.690 kb on + strand, within AO356_02265at 486.691 kb on - strand, within AO356_02265at 486.935 kb on + strand, within AO356_02265at 486.970 kb on + strand, within AO356_02265at 486.976 kb on - strand, within AO356_02265at 486.976 kb on - strand, within AO356_02265at 486.985 kb on - strand, within AO356_02265at 486.985 kb on - strand, within AO356_02265at 487.012 kb on - strand, within AO356_02265at 487.012 kb on - strand, within AO356_02265at 487.012 kb on - strand, within AO356_02265at 487.536 kb on + strandat 487.537 kb on - strandat 487.671 kb on + strandat 487.691 kb on + strandat 487.692 kb on - strandat 487.697 kb on - strandat 487.762 kb on + strandat 487.879 kb on + strandat 487.879 kb on + strandat 487.879 kb on + strandat 487.880 kb on - strandat 487.880 kb on - strandat 487.957 kb on + strandat 487.957 kb on + strandat 487.958 kb on - strandat 487.958 kb on - strandat 488.069 kb on + strandat 488.178 kb on + strandat 488.178 kb on + strandat 488.179 kb on - strandat 488.307 kb on - strand, within AO356_02270at 488.307 kb on - strand, within AO356_02270at 488.307 kb on - strand, within AO356_02270at 488.307 kb on - strand, within AO356_02270at 488.375 kb on + strand, within AO356_02270at 488.612 kb on + strand, within AO356_02270at 488.612 kb on + strand, within AO356_02270at 488.615 kb on + strand, within AO356_02270at 488.615 kb on + strand, within AO356_02270at 488.616 kb on - strand, within AO356_02270at 488.657 kb on + strand, within AO356_02270at 488.658 kb on - strand, within AO356_02270

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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485,449 + AO356_02260 0.55 +0.6
485,449 + AO356_02260 0.55 -1.3
485,450 - AO356_02260 0.55 +0.2
485,450 - AO356_02260 0.55 +0.4
485,450 - AO356_02260 0.55 -1.1
485,470 + AO356_02260 0.56 -0.0
485,470 + AO356_02260 0.56 +0.3
485,470 + AO356_02260 0.56 +0.3
485,483 + AO356_02260 0.57 -0.2
485,484 - AO356_02260 0.57 +0.8
485,484 - AO356_02260 0.57 -0.3
485,500 + AO356_02260 0.59 +0.4
485,500 + AO356_02260 0.59 -0.8
485,501 - AO356_02260 0.59 +0.4
485,501 - AO356_02260 0.59 +0.6
485,501 - AO356_02260 0.59 +0.2
485,638 - AO356_02260 0.69 +0.7
485,676 - AO356_02260 0.72 -0.2
485,753 + AO356_02260 0.78 +0.1
485,763 - AO356_02260 0.79 +0.1
485,811 + AO356_02260 0.83 +0.0
485,811 + AO356_02260 0.83 -0.1
485,837 + AO356_02260 0.85 +0.4
485,837 + AO356_02260 0.85 +0.4
485,837 + AO356_02260 0.85 -0.2
485,884 + AO356_02260 0.88 -0.3
485,884 + AO356_02260 0.88 +1.1
485,884 + AO356_02260 0.88 -0.3
485,884 + AO356_02260 0.88 -0.2
485,885 - AO356_02260 0.88 -0.6
485,888 + AO356_02260 0.88 -0.4
485,888 + AO356_02260 0.88 -0.8
485,888 + AO356_02260 0.88 +0.4
485,889 - AO356_02260 0.89 +0.2
486,038 + -2.0
486,039 - +0.8
486,039 - +0.8
486,090 + +0.7
486,090 + -0.7
486,090 + -0.3
486,091 - -0.2
486,091 - +0.9
486,091 - -0.5
486,091 - -0.7
486,300 + +0.0
486,300 + -2.8
486,301 - -1.7
486,301 - -2.4
486,445 - AO356_02265 0.16 -2.0
486,454 - AO356_02265 0.17 -2.0
486,454 - AO356_02265 0.17 -2.1
486,690 + AO356_02265 0.33 -1.6
486,691 - AO356_02265 0.33 -2.9
486,935 + AO356_02265 0.50 -2.3
486,970 + AO356_02265 0.52 -2.2
486,976 - AO356_02265 0.53 -0.4
486,976 - AO356_02265 0.53 -1.2
486,985 - AO356_02265 0.53 -3.3
486,985 - AO356_02265 0.53 -1.0
487,012 - AO356_02265 0.55 -1.1
487,012 - AO356_02265 0.55 +0.0
487,012 - AO356_02265 0.55 -1.4
487,536 + -2.3
487,537 - -1.7
487,671 + -1.7
487,691 + -1.8
487,692 - +0.1
487,697 - -0.8
487,762 + +0.1
487,879 + +0.2
487,879 + +0.2
487,879 + -1.4
487,880 - -0.1
487,880 - -0.3
487,957 + -0.0
487,957 + +0.2
487,958 - -0.0
487,958 - +0.1
488,069 + +0.7
488,178 + +1.0
488,178 + -0.2
488,179 - +1.1
488,307 - AO356_02270 0.14 +0.4
488,307 - AO356_02270 0.14 -2.0
488,307 - AO356_02270 0.14 +0.2
488,307 - AO356_02270 0.14 -1.7
488,375 + AO356_02270 0.16 +0.9
488,612 + AO356_02270 0.22 +1.2
488,612 + AO356_02270 0.22 +1.4
488,615 + AO356_02270 0.23 +0.2
488,615 + AO356_02270 0.23 +0.3
488,616 - AO356_02270 0.23 +0.4
488,657 + AO356_02270 0.24 -0.7
488,658 - AO356_02270 0.24 -0.3

Or see this region's nucleotide sequence