Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01545

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01535 and AO356_01540 overlap by 4 nucleotidesAO356_01540 and AO356_01545 are separated by 38 nucleotidesAO356_01545 and AO356_01550 are separated by 182 nucleotides AO356_01535: AO356_01535 - hypothetical protein, at 347,116 to 347,889 _01535 AO356_01540: AO356_01540 - transposase, at 347,886 to 348,527 _01540 AO356_01545: AO356_01545 - hypothetical protein, at 348,566 to 348,748 _01545 AO356_01550: AO356_01550 - oxaloacetate decarboxylase, at 348,931 to 349,800 _01550 Position (kb) 348 349Strain fitness (log2 ratio) -1 0 1 2at 347.606 kb on + strand, within AO356_01535at 347.740 kb on + strand, within AO356_01535at 347.740 kb on + strand, within AO356_01535at 347.740 kb on + strand, within AO356_01535at 347.740 kb on + strand, within AO356_01535at 347.740 kb on + strand, within AO356_01535at 347.740 kb on + strand, within AO356_01535at 347.740 kb on + strand, within AO356_01535at 347.741 kb on - strand, within AO356_01535at 347.741 kb on - strand, within AO356_01535at 347.741 kb on - strand, within AO356_01535at 347.741 kb on - strand, within AO356_01535at 347.747 kb on - strand, within AO356_01535at 347.815 kb on + strandat 347.815 kb on + strandat 347.815 kb on + strandat 347.816 kb on - strandat 347.816 kb on - strandat 347.939 kb on + strandat 347.939 kb on + strandat 347.939 kb on + strandat 347.939 kb on + strandat 347.940 kb on - strandat 347.940 kb on - strandat 348.006 kb on + strand, within AO356_01540at 348.035 kb on + strand, within AO356_01540at 348.036 kb on - strand, within AO356_01540at 348.036 kb on - strand, within AO356_01540at 348.051 kb on + strand, within AO356_01540at 348.052 kb on - strand, within AO356_01540at 348.061 kb on - strand, within AO356_01540at 348.092 kb on + strand, within AO356_01540at 348.153 kb on + strand, within AO356_01540at 348.153 kb on + strand, within AO356_01540at 348.153 kb on + strand, within AO356_01540at 348.153 kb on + strand, within AO356_01540at 348.153 kb on + strand, within AO356_01540at 348.154 kb on - strand, within AO356_01540at 348.154 kb on - strand, within AO356_01540at 348.154 kb on - strand, within AO356_01540at 348.154 kb on - strand, within AO356_01540at 348.198 kb on + strand, within AO356_01540at 348.214 kb on - strand, within AO356_01540at 348.214 kb on - strand, within AO356_01540at 348.215 kb on + strand, within AO356_01540at 348.216 kb on - strand, within AO356_01540at 348.222 kb on - strand, within AO356_01540at 348.222 kb on - strand, within AO356_01540at 348.248 kb on - strand, within AO356_01540at 348.263 kb on + strand, within AO356_01540at 348.263 kb on + strand, within AO356_01540at 348.264 kb on - strand, within AO356_01540at 348.264 kb on - strand, within AO356_01540at 348.321 kb on + strand, within AO356_01540at 348.321 kb on + strand, within AO356_01540at 348.322 kb on - strand, within AO356_01540at 348.322 kb on - strand, within AO356_01540at 348.322 kb on - strand, within AO356_01540at 348.322 kb on - strand, within AO356_01540at 348.322 kb on - strand, within AO356_01540at 348.322 kb on - strand, within AO356_01540at 348.469 kb on + strandat 348.490 kb on + strandat 348.491 kb on - strandat 348.491 kb on - strandat 348.548 kb on + strandat 348.549 kb on - strandat 348.572 kb on - strandat 348.638 kb on - strand, within AO356_01545at 348.786 kb on - strandat 348.829 kb on + strandat 348.830 kb on - strandat 348.830 kb on - strandat 348.830 kb on - strandat 348.850 kb on - strandat 348.850 kb on - strandat 348.865 kb on + strandat 348.930 kb on + strandat 348.930 kb on + strandat 348.930 kb on + strandat 348.930 kb on + strandat 348.931 kb on - strandat 348.931 kb on - strandat 348.931 kb on - strandat 348.931 kb on - strandat 348.931 kb on - strandat 348.931 kb on - strandat 348.997 kb on + strandat 348.997 kb on + strandat 348.998 kb on - strandat 348.998 kb on - strandat 349.061 kb on + strand, within AO356_01550at 349.061 kb on + strand, within AO356_01550at 349.061 kb on + strand, within AO356_01550at 349.061 kb on + strand, within AO356_01550at 349.062 kb on - strand, within AO356_01550at 349.062 kb on - strand, within AO356_01550at 349.062 kb on - strand, within AO356_01550at 349.065 kb on + strand, within AO356_01550at 349.065 kb on + strand, within AO356_01550at 349.065 kb on + strand, within AO356_01550at 349.065 kb on + strand, within AO356_01550at 349.097 kb on + strand, within AO356_01550at 349.097 kb on + strand, within AO356_01550at 349.098 kb on - strand, within AO356_01550at 349.098 kb on - strand, within AO356_01550at 349.459 kb on + strand, within AO356_01550at 349.459 kb on + strand, within AO356_01550at 349.460 kb on - strand, within AO356_01550at 349.460 kb on - strand, within AO356_01550at 349.460 kb on - strand, within AO356_01550at 349.460 kb on - strand, within AO356_01550at 349.460 kb on - strand, within AO356_01550at 349.565 kb on - strand, within AO356_01550at 349.642 kb on + strand, within AO356_01550at 349.643 kb on - strand, within AO356_01550at 349.643 kb on - strand, within AO356_01550at 349.666 kb on + strand, within AO356_01550at 349.666 kb on + strand, within AO356_01550at 349.667 kb on - strand, within AO356_01550at 349.667 kb on - strand, within AO356_01550at 349.667 kb on - strand, within AO356_01550at 349.741 kb on + strandat 349.741 kb on + strandat 349.741 kb on + strandat 349.742 kb on - strandat 349.742 kb on - strandat 349.742 kb on - strandat 349.742 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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347,606 + AO356_01535 0.63 -0.2
347,740 + AO356_01535 0.81 +0.7
347,740 + AO356_01535 0.81 +0.1
347,740 + AO356_01535 0.81 +0.1
347,740 + AO356_01535 0.81 -0.1
347,740 + AO356_01535 0.81 -0.2
347,740 + AO356_01535 0.81 +0.1
347,740 + AO356_01535 0.81 +0.5
347,741 - AO356_01535 0.81 -0.9
347,741 - AO356_01535 0.81 -0.3
347,741 - AO356_01535 0.81 +0.0
347,741 - AO356_01535 0.81 +1.1
347,747 - AO356_01535 0.82 -0.4
347,815 + -0.4
347,815 + +0.1
347,815 + +0.1
347,816 - -0.3
347,816 - -1.3
347,939 + -0.4
347,939 + +0.3
347,939 + +0.9
347,939 + +1.1
347,940 - -0.2
347,940 - +0.4
348,006 + AO356_01540 0.19 +0.5
348,035 + AO356_01540 0.23 -0.8
348,036 - AO356_01540 0.23 -0.1
348,036 - AO356_01540 0.23 -0.1
348,051 + AO356_01540 0.26 +0.3
348,052 - AO356_01540 0.26 -0.1
348,061 - AO356_01540 0.27 +0.5
348,092 + AO356_01540 0.32 -1.2
348,153 + AO356_01540 0.42 +0.3
348,153 + AO356_01540 0.42 +0.4
348,153 + AO356_01540 0.42 +0.1
348,153 + AO356_01540 0.42 -0.9
348,153 + AO356_01540 0.42 +0.7
348,154 - AO356_01540 0.42 -0.9
348,154 - AO356_01540 0.42 +0.6
348,154 - AO356_01540 0.42 +0.7
348,154 - AO356_01540 0.42 -0.5
348,198 + AO356_01540 0.49 +0.1
348,214 - AO356_01540 0.51 +0.8
348,214 - AO356_01540 0.51 +0.8
348,215 + AO356_01540 0.51 +0.0
348,216 - AO356_01540 0.51 -0.8
348,222 - AO356_01540 0.52 -0.1
348,222 - AO356_01540 0.52 -0.6
348,248 - AO356_01540 0.56 +0.3
348,263 + AO356_01540 0.59 +0.6
348,263 + AO356_01540 0.59 -0.9
348,264 - AO356_01540 0.59 -0.6
348,264 - AO356_01540 0.59 +0.7
348,321 + AO356_01540 0.68 +1.8
348,321 + AO356_01540 0.68 +0.3
348,322 - AO356_01540 0.68 +0.5
348,322 - AO356_01540 0.68 +1.1
348,322 - AO356_01540 0.68 +0.1
348,322 - AO356_01540 0.68 -0.9
348,322 - AO356_01540 0.68 -0.1
348,322 - AO356_01540 0.68 -1.2
348,469 + +0.3
348,490 + -0.1
348,491 - -0.2
348,491 - +0.4
348,548 + -0.7
348,549 - +0.6
348,572 - -0.1
348,638 - AO356_01545 0.39 -0.8
348,786 - -1.6
348,829 + +0.1
348,830 - -0.4
348,830 - +0.6
348,830 - -0.1
348,850 - +0.1
348,850 - +0.1
348,865 + +0.1
348,930 + -0.6
348,930 + +0.9
348,930 + +1.3
348,930 + +0.1
348,931 - +0.1
348,931 - +0.5
348,931 - +1.2
348,931 - +0.4
348,931 - -0.1
348,931 - -0.7
348,997 + +0.2
348,997 + +0.1
348,998 - -0.7
348,998 - +0.2
349,061 + AO356_01550 0.15 -1.0
349,061 + AO356_01550 0.15 -0.2
349,061 + AO356_01550 0.15 +1.0
349,061 + AO356_01550 0.15 -0.2
349,062 - AO356_01550 0.15 -0.1
349,062 - AO356_01550 0.15 -0.2
349,062 - AO356_01550 0.15 -1.1
349,065 + AO356_01550 0.15 +0.7
349,065 + AO356_01550 0.15 -0.0
349,065 + AO356_01550 0.15 -0.1
349,065 + AO356_01550 0.15 +0.2
349,097 + AO356_01550 0.19 -0.5
349,097 + AO356_01550 0.19 +0.7
349,098 - AO356_01550 0.19 +0.8
349,098 - AO356_01550 0.19 -0.1
349,459 + AO356_01550 0.61 -0.2
349,459 + AO356_01550 0.61 -0.1
349,460 - AO356_01550 0.61 -0.3
349,460 - AO356_01550 0.61 +0.4
349,460 - AO356_01550 0.61 -0.2
349,460 - AO356_01550 0.61 +0.4
349,460 - AO356_01550 0.61 -0.5
349,565 - AO356_01550 0.73 +1.4
349,642 + AO356_01550 0.82 +0.4
349,643 - AO356_01550 0.82 +0.4
349,643 - AO356_01550 0.82 -0.3
349,666 + AO356_01550 0.84 -0.6
349,666 + AO356_01550 0.84 +0.0
349,667 - AO356_01550 0.85 +0.0
349,667 - AO356_01550 0.85 -0.1
349,667 - AO356_01550 0.85 +0.5
349,741 + +0.4
349,741 + -0.5
349,741 + -0.2
349,742 - +0.6
349,742 - +0.0
349,742 - +0.1
349,742 - +1.1

Or see this region's nucleotide sequence