Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_57

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_55 and PfGW456L13_56 are separated by 38 nucleotidesPfGW456L13_56 and PfGW456L13_57 are separated by 82 nucleotidesPfGW456L13_57 and PfGW456L13_58 are separated by 149 nucleotides PfGW456L13_55 - tRNA dihydrouridine synthase B (EC 1.-.-.-), at 64,894 to 65,904 _55 PfGW456L13_56 - DNA-binding protein Fis, at 65,943 to 66,221 _56 PfGW456L13_57 - IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3), at 66,304 to 67,911 _57 PfGW456L13_58 - Phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 68,061 to 69,356 _58 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1at 65.391 kb on + strand, within PfGW456L13_55at 65.431 kb on + strand, within PfGW456L13_55at 65.431 kb on + strand, within PfGW456L13_55at 65.431 kb on + strand, within PfGW456L13_55at 65.681 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.817 kb on + strandat 65.817 kb on + strandat 65.863 kb on + strandat 65.863 kb on + strandat 65.863 kb on + strandat 65.923 kb on + strandat 66.219 kb on + strandat 66.219 kb on + strandat 66.219 kb on + strandat 66.219 kb on + strandat 66.219 kb on + strandat 66.219 kb on + strandat 66.219 kb on + strandat 66.219 kb on + strandat 67.930 kb on + strandat 67.930 kb on + strandat 67.930 kb on + strandat 67.959 kb on + strandat 68.024 kb on + strandat 68.024 kb on + strandat 68.024 kb on + strandat 68.024 kb on + strandat 68.024 kb on + strandat 68.024 kb on + strandat 68.024 kb on + strandat 68.024 kb on + strandat 68.024 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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65,391 + PfGW456L13_55 0.49 -0.1
65,431 + PfGW456L13_55 0.53 -0.2
65,431 + PfGW456L13_55 0.53 -0.5
65,431 + PfGW456L13_55 0.53 -1.3
65,681 + PfGW456L13_55 0.78 -1.3
65,710 + PfGW456L13_55 0.81 +0.1
65,710 + PfGW456L13_55 0.81 -2.3
65,710 + PfGW456L13_55 0.81 -0.1
65,710 + PfGW456L13_55 0.81 -0.2
65,710 + PfGW456L13_55 0.81 -0.6
65,710 + PfGW456L13_55 0.81 +0.3
65,710 + PfGW456L13_55 0.81 -1.5
65,710 + PfGW456L13_55 0.81 -0.3
65,710 + PfGW456L13_55 0.81 +0.2
65,710 + PfGW456L13_55 0.81 -1.5
65,710 + PfGW456L13_55 0.81 -0.1
65,710 + PfGW456L13_55 0.81 +0.0
65,817 + +0.7
65,817 + +0.2
65,863 + +0.7
65,863 + -0.5
65,863 + -0.2
65,923 + +0.1
66,219 + +0.2
66,219 + -0.5
66,219 + -0.1
66,219 + +0.3
66,219 + +0.4
66,219 + -0.6
66,219 + +0.6
66,219 + -2.2
67,930 + +0.5
67,930 + -0.1
67,930 + +0.2
67,959 + -0.1
68,024 + -0.1
68,024 + -0.2
68,024 + +0.0
68,024 + +0.4
68,024 + -0.1
68,024 + -0.6
68,024 + -0.3
68,024 + -1.2
68,024 + -0.7

Or see this region's nucleotide sequence