Strain Fitness in Rahnella sp. WP5 around EX31_RS22675

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22670 and EX31_RS22675 are separated by 75 nucleotidesEX31_RS22675 and EX31_RS22680 are separated by 22 nucleotides EX31_RS22670: EX31_RS22670 - sensor domain-containing phosphodiesterase, at 291,150 to 293,390 _RS22670 EX31_RS22675: EX31_RS22675 - exopolyphosphatase, at 293,466 to 295,010 _RS22675 EX31_RS22680: EX31_RS22680 - polyphosphate kinase 1, at 295,033 to 297,102 _RS22680 Position (kb) 293 294 295 296Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 292.489 kb on + strand, within EX31_RS22670at 292.500 kb on - strand, within EX31_RS22670at 292.500 kb on - strand, within EX31_RS22670at 292.500 kb on - strand, within EX31_RS22670at 292.500 kb on - strand, within EX31_RS22670at 292.554 kb on - strand, within EX31_RS22670at 292.615 kb on + strand, within EX31_RS22670at 292.652 kb on + strand, within EX31_RS22670at 292.652 kb on + strand, within EX31_RS22670at 292.728 kb on + strand, within EX31_RS22670at 292.728 kb on + strand, within EX31_RS22670at 292.728 kb on + strand, within EX31_RS22670at 292.729 kb on - strand, within EX31_RS22670at 292.824 kb on + strand, within EX31_RS22670at 292.835 kb on + strand, within EX31_RS22670at 292.836 kb on - strand, within EX31_RS22670at 292.853 kb on + strand, within EX31_RS22670at 292.853 kb on + strand, within EX31_RS22670at 292.853 kb on + strand, within EX31_RS22670at 292.853 kb on + strand, within EX31_RS22670at 292.853 kb on + strand, within EX31_RS22670at 292.853 kb on + strand, within EX31_RS22670at 292.865 kb on + strand, within EX31_RS22670at 292.865 kb on + strand, within EX31_RS22670at 292.946 kb on + strand, within EX31_RS22670at 292.947 kb on - strand, within EX31_RS22670at 292.977 kb on + strand, within EX31_RS22670at 292.978 kb on - strand, within EX31_RS22670at 292.984 kb on + strand, within EX31_RS22670at 293.043 kb on + strand, within EX31_RS22670at 293.043 kb on + strand, within EX31_RS22670at 293.076 kb on + strand, within EX31_RS22670at 293.142 kb on - strand, within EX31_RS22670at 293.186 kb on + strandat 293.187 kb on - strandat 293.187 kb on - strandat 293.187 kb on - strandat 293.211 kb on + strandat 293.212 kb on - strandat 293.212 kb on - strandat 293.212 kb on - strandat 293.212 kb on - strandat 293.271 kb on + strandat 293.271 kb on + strandat 293.271 kb on + strandat 293.271 kb on + strandat 293.271 kb on + strandat 293.271 kb on + strandat 293.272 kb on - strandat 293.272 kb on - strandat 293.322 kb on + strandat 293.322 kb on + strandat 293.323 kb on - strandat 293.342 kb on - strandat 293.345 kb on + strandat 293.346 kb on - strandat 293.346 kb on - strandat 293.368 kb on + strandat 293.450 kb on + strandat 293.451 kb on - strandat 293.451 kb on - strandat 293.451 kb on - strandat 293.451 kb on - strandat 293.467 kb on + strandat 293.481 kb on - strandat 293.581 kb on + strandat 293.612 kb on + strandat 293.612 kb on + strandat 293.613 kb on - strandat 293.626 kb on - strand, within EX31_RS22675at 293.710 kb on + strand, within EX31_RS22675at 293.710 kb on + strand, within EX31_RS22675at 293.711 kb on - strand, within EX31_RS22675at 293.711 kb on - strand, within EX31_RS22675at 293.711 kb on - strand, within EX31_RS22675at 293.711 kb on - strand, within EX31_RS22675at 293.711 kb on - strand, within EX31_RS22675at 293.711 kb on - strand, within EX31_RS22675at 293.711 kb on - strand, within EX31_RS22675at 293.831 kb on + strand, within EX31_RS22675at 293.832 kb on - strand, within EX31_RS22675at 293.832 kb on - strand, within EX31_RS22675at 293.843 kb on + strand, within EX31_RS22675at 293.845 kb on + strand, within EX31_RS22675at 293.846 kb on - strand, within EX31_RS22675at 293.846 kb on - strand, within EX31_RS22675at 293.846 kb on - strand, within EX31_RS22675at 293.846 kb on - strand, within EX31_RS22675at 293.846 kb on - strand, within EX31_RS22675at 293.846 kb on - strand, within EX31_RS22675at 293.846 kb on - strand, within EX31_RS22675at 293.846 kb on - strand, within EX31_RS22675at 293.974 kb on + strand, within EX31_RS22675at 293.974 kb on + strand, within EX31_RS22675at 293.974 kb on + strand, within EX31_RS22675at 293.974 kb on + strand, within EX31_RS22675at 293.975 kb on - strand, within EX31_RS22675at 294.028 kb on + strand, within EX31_RS22675at 294.029 kb on - strand, within EX31_RS22675at 294.029 kb on - strand, within EX31_RS22675at 294.029 kb on - strand, within EX31_RS22675at 294.097 kb on + strand, within EX31_RS22675at 294.098 kb on - strand, within EX31_RS22675at 294.249 kb on - strand, within EX31_RS22675at 294.297 kb on + strand, within EX31_RS22675at 294.297 kb on + strand, within EX31_RS22675at 294.297 kb on + strand, within EX31_RS22675at 294.298 kb on - strand, within EX31_RS22675at 294.298 kb on - strand, within EX31_RS22675at 294.298 kb on - strand, within EX31_RS22675at 294.298 kb on - strand, within EX31_RS22675at 294.449 kb on + strand, within EX31_RS22675at 294.449 kb on + strand, within EX31_RS22675at 294.450 kb on - strand, within EX31_RS22675at 294.611 kb on + strand, within EX31_RS22675at 294.611 kb on + strand, within EX31_RS22675at 294.611 kb on + strand, within EX31_RS22675at 294.611 kb on + strand, within EX31_RS22675at 294.611 kb on + strand, within EX31_RS22675at 294.612 kb on - strand, within EX31_RS22675at 294.612 kb on - strand, within EX31_RS22675at 294.612 kb on - strand, within EX31_RS22675at 294.612 kb on - strand, within EX31_RS22675at 294.612 kb on - strand, within EX31_RS22675at 294.612 kb on - strand, within EX31_RS22675at 294.612 kb on - strand, within EX31_RS22675at 294.632 kb on + strand, within EX31_RS22675at 294.632 kb on + strand, within EX31_RS22675at 294.632 kb on + strand, within EX31_RS22675at 294.633 kb on - strand, within EX31_RS22675at 294.633 kb on - strand, within EX31_RS22675at 294.734 kb on + strand, within EX31_RS22675at 294.734 kb on + strand, within EX31_RS22675at 294.734 kb on + strand, within EX31_RS22675at 294.734 kb on + strand, within EX31_RS22675at 294.734 kb on + strand, within EX31_RS22675at 294.734 kb on + strand, within EX31_RS22675at 294.734 kb on + strand, within EX31_RS22675at 294.734 kb on + strand, within EX31_RS22675at 294.735 kb on - strand, within EX31_RS22675at 294.735 kb on - strand, within EX31_RS22675at 294.735 kb on - strand, within EX31_RS22675at 294.735 kb on - strand, within EX31_RS22675at 294.735 kb on - strand, within EX31_RS22675at 294.735 kb on - strand, within EX31_RS22675at 294.735 kb on - strand, within EX31_RS22675at 294.735 kb on - strand, within EX31_RS22675at 294.735 kb on - strand, within EX31_RS22675at 294.735 kb on - strand, within EX31_RS22675at 294.741 kb on - strand, within EX31_RS22675at 294.749 kb on + strand, within EX31_RS22675at 294.758 kb on + strand, within EX31_RS22675at 294.759 kb on - strand, within EX31_RS22675at 294.792 kb on + strand, within EX31_RS22675at 295.002 kb on - strandat 295.010 kb on + strandat 295.010 kb on + strandat 295.010 kb on + strandat 295.010 kb on + strandat 295.010 kb on + strandat 295.010 kb on + strandat 295.011 kb on - strandat 295.011 kb on - strandat 295.011 kb on - strandat 295.011 kb on - strandat 295.011 kb on - strandat 295.011 kb on - strandat 295.011 kb on - strandat 295.011 kb on - strandat 295.011 kb on - strandat 295.011 kb on - strandat 295.011 kb on - strandat 295.011 kb on - strandat 295.076 kb on + strandat 295.077 kb on - strandat 295.077 kb on - strandat 295.143 kb on + strandat 295.162 kb on + strandat 295.163 kb on - strandat 295.163 kb on - strandat 295.163 kb on - strandat 295.163 kb on - strandat 295.173 kb on + strandat 295.245 kb on + strand, within EX31_RS22680at 295.258 kb on - strand, within EX31_RS22680at 295.260 kb on + strand, within EX31_RS22680at 295.706 kb on + strand, within EX31_RS22680at 295.707 kb on - strand, within EX31_RS22680at 295.729 kb on - strand, within EX31_RS22680at 295.788 kb on + strand, within EX31_RS22680at 295.788 kb on + strand, within EX31_RS22680at 295.807 kb on + strand, within EX31_RS22680at 295.808 kb on - strand, within EX31_RS22680at 295.833 kb on + strand, within EX31_RS22680at 295.993 kb on - strand, within EX31_RS22680

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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292,489 + EX31_RS22670 0.60 +0.9
292,500 - EX31_RS22670 0.60 +0.7
292,500 - EX31_RS22670 0.60 +0.0
292,500 - EX31_RS22670 0.60 +0.8
292,500 - EX31_RS22670 0.60 +0.8
292,554 - EX31_RS22670 0.63 +0.6
292,615 + EX31_RS22670 0.65 +3.1
292,652 + EX31_RS22670 0.67 +1.2
292,652 + EX31_RS22670 0.67 +0.9
292,728 + EX31_RS22670 0.70 -0.3
292,728 + EX31_RS22670 0.70 +3.0
292,728 + EX31_RS22670 0.70 -3.0
292,729 - EX31_RS22670 0.70 +2.2
292,824 + EX31_RS22670 0.75 -0.4
292,835 + EX31_RS22670 0.75 -0.4
292,836 - EX31_RS22670 0.75 -0.5
292,853 + EX31_RS22670 0.76 -1.9
292,853 + EX31_RS22670 0.76 +2.5
292,853 + EX31_RS22670 0.76 -1.8
292,853 + EX31_RS22670 0.76 +0.2
292,853 + EX31_RS22670 0.76 +0.2
292,853 + EX31_RS22670 0.76 +0.6
292,865 + EX31_RS22670 0.77 -0.2
292,865 + EX31_RS22670 0.77 -0.1
292,946 + EX31_RS22670 0.80 +0.0
292,947 - EX31_RS22670 0.80 -0.8
292,977 + EX31_RS22670 0.82 +0.9
292,978 - EX31_RS22670 0.82 +0.2
292,984 + EX31_RS22670 0.82 +0.3
293,043 + EX31_RS22670 0.84 +0.6
293,043 + EX31_RS22670 0.84 +0.7
293,076 + EX31_RS22670 0.86 +2.2
293,142 - EX31_RS22670 0.89 -1.1
293,186 + -2.6
293,187 - -2.1
293,187 - +0.2
293,187 - -1.4
293,211 + -0.4
293,212 - -0.0
293,212 - -0.8
293,212 - +0.8
293,212 - -0.2
293,271 + +0.8
293,271 + -1.0
293,271 + +0.1
293,271 + +1.9
293,271 + -1.6
293,271 + -3.1
293,272 - -1.6
293,272 - -0.8
293,322 + -1.1
293,322 + +0.5
293,323 - +1.6
293,342 - -0.6
293,345 + -1.6
293,346 - -1.1
293,346 - -0.8
293,368 + +1.2
293,450 + +1.6
293,451 - -1.9
293,451 - +1.2
293,451 - -0.1
293,451 - -0.4
293,467 + +2.5
293,481 - -0.4
293,581 + -1.4
293,612 + +0.2
293,612 + -1.4
293,613 - +1.1
293,626 - EX31_RS22675 0.10 +0.8
293,710 + EX31_RS22675 0.16 -0.2
293,710 + EX31_RS22675 0.16 -2.1
293,711 - EX31_RS22675 0.16 +0.8
293,711 - EX31_RS22675 0.16 -0.4
293,711 - EX31_RS22675 0.16 +0.1
293,711 - EX31_RS22675 0.16 -0.6
293,711 - EX31_RS22675 0.16 -1.1
293,711 - EX31_RS22675 0.16 +1.8
293,711 - EX31_RS22675 0.16 +0.5
293,831 + EX31_RS22675 0.24 +1.2
293,832 - EX31_RS22675 0.24 +0.6
293,832 - EX31_RS22675 0.24 +0.5
293,843 + EX31_RS22675 0.24 -0.4
293,845 + EX31_RS22675 0.25 -1.1
293,846 - EX31_RS22675 0.25 -1.4
293,846 - EX31_RS22675 0.25 +0.2
293,846 - EX31_RS22675 0.25 -0.4
293,846 - EX31_RS22675 0.25 -0.5
293,846 - EX31_RS22675 0.25 -1.6
293,846 - EX31_RS22675 0.25 -1.4
293,846 - EX31_RS22675 0.25 +1.2
293,846 - EX31_RS22675 0.25 +0.7
293,974 + EX31_RS22675 0.33 +1.8
293,974 + EX31_RS22675 0.33 +2.1
293,974 + EX31_RS22675 0.33 +0.7
293,974 + EX31_RS22675 0.33 +0.4
293,975 - EX31_RS22675 0.33 +0.3
294,028 + EX31_RS22675 0.36 +1.2
294,029 - EX31_RS22675 0.36 -1.6
294,029 - EX31_RS22675 0.36 +1.8
294,029 - EX31_RS22675 0.36 +1.2
294,097 + EX31_RS22675 0.41 +1.0
294,098 - EX31_RS22675 0.41 +0.2
294,249 - EX31_RS22675 0.51 +1.0
294,297 + EX31_RS22675 0.54 +1.2
294,297 + EX31_RS22675 0.54 -0.8
294,297 + EX31_RS22675 0.54 -0.8
294,298 - EX31_RS22675 0.54 +1.0
294,298 - EX31_RS22675 0.54 +0.0
294,298 - EX31_RS22675 0.54 +0.6
294,298 - EX31_RS22675 0.54 +1.8
294,449 + EX31_RS22675 0.64 +3.5
294,449 + EX31_RS22675 0.64 -1.1
294,450 - EX31_RS22675 0.64 -0.1
294,611 + EX31_RS22675 0.74 +2.4
294,611 + EX31_RS22675 0.74 +0.3
294,611 + EX31_RS22675 0.74 +0.8
294,611 + EX31_RS22675 0.74 +0.6
294,611 + EX31_RS22675 0.74 -1.1
294,612 - EX31_RS22675 0.74 -1.5
294,612 - EX31_RS22675 0.74 +0.2
294,612 - EX31_RS22675 0.74 +0.4
294,612 - EX31_RS22675 0.74 -0.4
294,612 - EX31_RS22675 0.74 +1.0
294,612 - EX31_RS22675 0.74 +1.2
294,612 - EX31_RS22675 0.74 -0.4
294,632 + EX31_RS22675 0.75 +1.8
294,632 + EX31_RS22675 0.75 +0.1
294,632 + EX31_RS22675 0.75 +0.5
294,633 - EX31_RS22675 0.76 -1.9
294,633 - EX31_RS22675 0.76 -0.4
294,734 + EX31_RS22675 0.82 +0.8
294,734 + EX31_RS22675 0.82 -1.6
294,734 + EX31_RS22675 0.82 -0.1
294,734 + EX31_RS22675 0.82 -2.1
294,734 + EX31_RS22675 0.82 +0.5
294,734 + EX31_RS22675 0.82 -0.6
294,734 + EX31_RS22675 0.82 -1.6
294,734 + EX31_RS22675 0.82 -0.1
294,735 - EX31_RS22675 0.82 +1.2
294,735 - EX31_RS22675 0.82 -0.3
294,735 - EX31_RS22675 0.82 -0.1
294,735 - EX31_RS22675 0.82 -1.5
294,735 - EX31_RS22675 0.82 +1.1
294,735 - EX31_RS22675 0.82 +0.6
294,735 - EX31_RS22675 0.82 +0.5
294,735 - EX31_RS22675 0.82 +0.6
294,735 - EX31_RS22675 0.82 -0.5
294,735 - EX31_RS22675 0.82 -1.4
294,741 - EX31_RS22675 0.83 -1.8
294,749 + EX31_RS22675 0.83 +0.0
294,758 + EX31_RS22675 0.84 +2.0
294,759 - EX31_RS22675 0.84 -0.1
294,792 + EX31_RS22675 0.86 -1.1
295,002 - +1.2
295,010 + -1.2
295,010 + -0.8
295,010 + -0.4
295,010 + -1.8
295,010 + +0.2
295,010 + +2.2
295,011 - +0.9
295,011 - +0.2
295,011 - -0.7
295,011 - +2.2
295,011 - -0.4
295,011 - -1.4
295,011 - -1.9
295,011 - +1.1
295,011 - +0.7
295,011 - +1.5
295,011 - -0.2
295,011 - -0.4
295,076 + -0.4
295,077 - -1.5
295,077 - +0.5
295,143 + -0.8
295,162 + +1.2
295,163 - +0.0
295,163 - -0.0
295,163 - -0.1
295,163 - -1.1
295,173 + +0.2
295,245 + EX31_RS22680 0.10 -1.6
295,258 - EX31_RS22680 0.11 +0.5
295,260 + EX31_RS22680 0.11 +1.2
295,706 + EX31_RS22680 0.33 +1.5
295,707 - EX31_RS22680 0.33 +0.8
295,729 - EX31_RS22680 0.34 +0.2
295,788 + EX31_RS22680 0.36 -1.6
295,788 + EX31_RS22680 0.36 +1.0
295,807 + EX31_RS22680 0.37 -1.8
295,808 - EX31_RS22680 0.37 -0.9
295,833 + EX31_RS22680 0.39 +0.6
295,993 - EX31_RS22680 0.46 +0.8

Or see this region's nucleotide sequence