Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11430 and EX31_RS11435 are separated by 524 nucleotides
EX31_RS11430: EX31_RS11430 - SDR family oxidoreductase, at 219,769 to 220,593
_RS11430
EX31_RS11435: EX31_RS11435 - ATP phosphoribosyltransferase, at 221,118 to 222,017
_RS11435
Position (kb) 219
220
221 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 218.776 kb on - strand at 218.825 kb on + strand at 218.825 kb on + strand at 218.826 kb on - strand at 218.829 kb on + strand at 218.830 kb on - strand at 218.835 kb on - strand at 218.852 kb on + strand at 218.853 kb on - strand at 218.853 kb on - strand at 218.866 kb on - strand at 218.882 kb on + strand at 218.882 kb on + strand at 218.882 kb on + strand at 218.882 kb on + strand at 218.883 kb on - strand at 218.883 kb on - strand at 218.883 kb on - strand at 218.883 kb on - strand at 218.883 kb on - strand at 218.883 kb on - strand at 218.883 kb on - strand at 218.886 kb on + strand at 218.886 kb on + strand at 218.886 kb on + strand at 218.887 kb on - strand at 218.887 kb on - strand at 218.887 kb on - strand at 218.970 kb on + strand at 219.044 kb on + strand at 219.044 kb on + strand at 219.044 kb on + strand at 219.109 kb on + strand at 219.110 kb on - strand at 219.110 kb on - strand at 219.128 kb on + strand at 219.128 kb on + strand at 219.133 kb on - strand at 219.150 kb on + strand at 219.151 kb on - strand at 219.168 kb on - strand at 219.388 kb on + strand at 219.388 kb on + strand at 219.444 kb on + strand at 219.568 kb on + strand at 219.707 kb on + strand at 219.749 kb on - strand at 219.961 kb on - strand, within EX31_RS11430 at 219.962 kb on + strand, within EX31_RS11430 at 219.962 kb on + strand, within EX31_RS11430 at 219.962 kb on + strand, within EX31_RS11430 at 219.963 kb on - strand, within EX31_RS11430 at 219.963 kb on - strand, within EX31_RS11430 at 219.963 kb on - strand, within EX31_RS11430 at 219.963 kb on - strand, within EX31_RS11430 at 219.963 kb on - strand, within EX31_RS11430 at 219.963 kb on - strand, within EX31_RS11430 at 219.966 kb on + strand, within EX31_RS11430 at 219.967 kb on - strand, within EX31_RS11430 at 219.991 kb on + strand, within EX31_RS11430 at 220.078 kb on - strand, within EX31_RS11430 at 220.126 kb on + strand, within EX31_RS11430 at 220.126 kb on + strand, within EX31_RS11430 at 220.141 kb on - strand, within EX31_RS11430 at 220.141 kb on - strand, within EX31_RS11430 at 220.141 kb on - strand, within EX31_RS11430 at 220.141 kb on - strand, within EX31_RS11430 at 220.148 kb on - strand, within EX31_RS11430 at 220.288 kb on - strand, within EX31_RS11430 at 220.332 kb on - strand, within EX31_RS11430 at 220.483 kb on + strand, within EX31_RS11430 at 220.484 kb on - strand, within EX31_RS11430 at 220.484 kb on - strand, within EX31_RS11430 at 220.593 kb on + strand at 220.593 kb on + strand at 220.594 kb on - strand at 220.594 kb on - strand at 220.657 kb on + strand at 220.657 kb on + strand at 220.658 kb on - strand at 220.658 kb on - strand at 220.658 kb on - strand at 220.659 kb on + strand at 220.659 kb on + strand at 220.659 kb on + strand at 220.660 kb on - strand at 220.660 kb on - strand at 220.663 kb on - strand at 220.717 kb on + strand at 220.812 kb on - strand at 220.817 kb on + strand at 220.835 kb on + strand at 220.835 kb on + strand at 220.835 kb on + strand at 220.835 kb on + strand at 220.873 kb on + strand at 220.873 kb on + strand at 220.873 kb on + strand at 220.873 kb on + strand at 220.873 kb on + strand at 220.873 kb on + strand at 220.874 kb on - strand at 220.874 kb on - strand at 220.874 kb on - strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.876 kb on - strand at 220.885 kb on + strand at 220.885 kb on + strand at 220.885 kb on + strand at 220.885 kb on + strand at 220.886 kb on - strand at 220.886 kb on - strand at 221.009 kb on + strand at 221.009 kb on + strand at 221.009 kb on + strand at 221.096 kb on + strand at 221.096 kb on + strand at 221.096 kb on + strand at 221.097 kb on - strand at 221.097 kb on - strand at 221.097 kb on - strand at 221.395 kb on - strand, within EX31_RS11435 at 221.463 kb on + strand, within EX31_RS11435 at 221.464 kb on - strand, within EX31_RS11435 at 221.529 kb on + strand, within EX31_RS11435 at 221.529 kb on + strand, within EX31_RS11435
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 218,776 - -1.8 218,825 + -0.4 218,825 + +0.0 218,826 - +0.0 218,829 + +0.7 218,830 - +1.3 218,835 - +1.3 218,852 + +0.0 218,853 - +0.0 218,853 - +0.9 218,866 - +2.6 218,882 + +1.9 218,882 + +1.0 218,882 + +1.7 218,882 + -2.2 218,883 - +0.2 218,883 - -1.3 218,883 - -1.6 218,883 - +0.3 218,883 - +3.0 218,883 - -0.7 218,883 - -2.7 218,886 + +0.4 218,886 + -0.4 218,886 + +2.0 218,887 - -0.2 218,887 - +1.0 218,887 - +0.7 218,970 + +1.0 219,044 + -0.3 219,044 + +0.3 219,044 + -1.0 219,109 + +0.0 219,110 - -1.0 219,110 - -1.3 219,128 + -2.0 219,128 + +0.3 219,133 - -0.6 219,150 + -0.4 219,151 - +0.0 219,168 - +1.8 219,388 + -0.6 219,388 + +0.3 219,444 + -1.0 219,568 + +0.6 219,707 + +1.0 219,749 - +0.3 219,961 - EX31_RS11430 0.23 +1.2 219,962 + EX31_RS11430 0.23 +0.0 219,962 + EX31_RS11430 0.23 +0.1 219,962 + EX31_RS11430 0.23 -1.0 219,963 - EX31_RS11430 0.24 +1.8 219,963 - EX31_RS11430 0.24 +0.4 219,963 - EX31_RS11430 0.24 +0.0 219,963 - EX31_RS11430 0.24 -0.6 219,963 - EX31_RS11430 0.24 -0.3 219,963 - EX31_RS11430 0.24 -1.3 219,966 + EX31_RS11430 0.24 +0.7 219,967 - EX31_RS11430 0.24 +0.4 219,991 + EX31_RS11430 0.27 +2.0 220,078 - EX31_RS11430 0.37 +1.8 220,126 + EX31_RS11430 0.43 +1.0 220,126 + EX31_RS11430 0.43 -1.3 220,141 - EX31_RS11430 0.45 +2.1 220,141 - EX31_RS11430 0.45 -0.4 220,141 - EX31_RS11430 0.45 -1.0 220,141 - EX31_RS11430 0.45 +0.5 220,148 - EX31_RS11430 0.46 -1.3 220,288 - EX31_RS11430 0.63 +1.2 220,332 - EX31_RS11430 0.68 +1.0 220,483 + EX31_RS11430 0.87 +0.0 220,484 - EX31_RS11430 0.87 +1.0 220,484 - EX31_RS11430 0.87 +1.3 220,593 + +1.0 220,593 + +1.3 220,594 - -0.2 220,594 - +1.0 220,657 + -0.9 220,657 + +0.0 220,658 - +2.4 220,658 - -1.3 220,658 - +0.6 220,659 + -0.6 220,659 + +0.5 220,659 + +0.0 220,660 - -0.3 220,660 - +1.1 220,663 - +0.4 220,717 + +1.0 220,812 - +0.7 220,817 + +2.8 220,835 + -1.4 220,835 + -2.4 220,835 + -0.3 220,835 + -0.6 220,873 + +0.5 220,873 + +1.3 220,873 + -1.2 220,873 + +0.4 220,873 + +0.2 220,873 + -2.3 220,874 - +1.6 220,874 - -0.4 220,874 - -0.6 220,875 + -0.8 220,875 + -1.1 220,875 + +0.6 220,875 + +1.0 220,875 + +0.6 220,875 + -0.5 220,875 + +0.1 220,875 + -0.3 220,875 + +1.0 220,875 + +0.3 220,875 + +0.0 220,875 + +1.2 220,875 + +0.0 220,875 + -2.4 220,875 + +1.0 220,875 + +0.2 220,876 - -0.6 220,885 + +2.3 220,885 + +0.5 220,885 + +0.1 220,885 + -0.7 220,886 - +1.6 220,886 - +2.0 221,009 + +0.1 221,009 + +1.7 221,009 + -0.2 221,096 + -1.3 221,096 + +0.0 221,096 + -0.2 221,097 - +0.5 221,097 - -1.0 221,097 - +0.4 221,395 - EX31_RS11435 0.31 -0.8 221,463 + EX31_RS11435 0.38 -0.5 221,464 - EX31_RS11435 0.38 -1.3 221,529 + EX31_RS11435 0.46 +1.8 221,529 + EX31_RS11435 0.46 +0.7
Or see this region's nucleotide sequence