Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08675 and EX31_RS08680 are separated by 316 nucleotides EX31_RS08680 and EX31_RS08685 are separated by 101 nucleotides EX31_RS08685 and EX31_RS08690 are separated by 31 nucleotides
EX31_RS08675: EX31_RS08675 - HAMP domain-containing protein, at 241,314 to 242,885
_RS08675
EX31_RS08680: EX31_RS08680 - inorganic diphosphatase, at 243,202 to 243,732
_RS08680
EX31_RS08685: EX31_RS08685 - gamma-glutamylcyclotransferase, at 243,834 to 244,187
_RS08685
EX31_RS08690: EX31_RS08690 - translocation/assembly module TamB, at 244,219 to 248,034
_RS08690
Position (kb) 243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 242.315 kb on + strand, within EX31_RS08675 at 242.315 kb on + strand, within EX31_RS08675 at 242.354 kb on + strand, within EX31_RS08675 at 242.354 kb on + strand, within EX31_RS08675 at 242.355 kb on - strand, within EX31_RS08675 at 242.355 kb on - strand, within EX31_RS08675 at 242.355 kb on - strand, within EX31_RS08675 at 242.355 kb on - strand, within EX31_RS08675 at 242.355 kb on - strand, within EX31_RS08675 at 242.355 kb on - strand, within EX31_RS08675 at 242.357 kb on + strand, within EX31_RS08675 at 242.357 kb on + strand, within EX31_RS08675 at 242.357 kb on + strand, within EX31_RS08675 at 242.357 kb on + strand, within EX31_RS08675 at 242.358 kb on - strand, within EX31_RS08675 at 242.361 kb on + strand, within EX31_RS08675 at 242.361 kb on + strand, within EX31_RS08675 at 242.362 kb on - strand, within EX31_RS08675 at 242.368 kb on + strand, within EX31_RS08675 at 242.368 kb on + strand, within EX31_RS08675 at 242.368 kb on + strand, within EX31_RS08675 at 242.368 kb on + strand, within EX31_RS08675 at 242.369 kb on - strand, within EX31_RS08675 at 242.369 kb on - strand, within EX31_RS08675 at 242.369 kb on - strand, within EX31_RS08675 at 242.393 kb on + strand, within EX31_RS08675 at 242.394 kb on - strand, within EX31_RS08675 at 242.394 kb on - strand, within EX31_RS08675 at 242.394 kb on - strand, within EX31_RS08675 at 242.394 kb on - strand, within EX31_RS08675 at 242.398 kb on + strand, within EX31_RS08675 at 242.398 kb on + strand, within EX31_RS08675 at 242.398 kb on + strand, within EX31_RS08675 at 242.398 kb on + strand, within EX31_RS08675 at 242.398 kb on + strand, within EX31_RS08675 at 242.399 kb on - strand, within EX31_RS08675 at 242.399 kb on - strand, within EX31_RS08675 at 242.399 kb on - strand, within EX31_RS08675 at 242.399 kb on - strand, within EX31_RS08675 at 242.399 kb on - strand, within EX31_RS08675 at 242.410 kb on + strand, within EX31_RS08675 at 242.411 kb on - strand, within EX31_RS08675 at 242.411 kb on - strand, within EX31_RS08675 at 242.441 kb on - strand, within EX31_RS08675 at 242.441 kb on - strand, within EX31_RS08675 at 242.487 kb on + strand, within EX31_RS08675 at 242.488 kb on - strand, within EX31_RS08675 at 242.496 kb on - strand, within EX31_RS08675 at 242.496 kb on - strand, within EX31_RS08675 at 242.501 kb on + strand, within EX31_RS08675 at 242.503 kb on + strand, within EX31_RS08675 at 242.503 kb on + strand, within EX31_RS08675 at 242.504 kb on - strand, within EX31_RS08675 at 242.504 kb on - strand, within EX31_RS08675 at 242.504 kb on - strand, within EX31_RS08675 at 242.512 kb on + strand, within EX31_RS08675 at 242.512 kb on + strand, within EX31_RS08675 at 242.512 kb on + strand, within EX31_RS08675 at 242.512 kb on + strand, within EX31_RS08675 at 242.512 kb on + strand, within EX31_RS08675 at 242.513 kb on - strand, within EX31_RS08675 at 242.513 kb on - strand, within EX31_RS08675 at 242.513 kb on - strand, within EX31_RS08675 at 242.606 kb on + strand, within EX31_RS08675 at 242.606 kb on + strand, within EX31_RS08675 at 242.606 kb on + strand, within EX31_RS08675 at 242.608 kb on + strand, within EX31_RS08675 at 242.608 kb on + strand, within EX31_RS08675 at 242.608 kb on + strand, within EX31_RS08675 at 242.608 kb on + strand, within EX31_RS08675 at 242.609 kb on - strand, within EX31_RS08675 at 242.609 kb on - strand, within EX31_RS08675 at 242.631 kb on - strand, within EX31_RS08675 at 242.697 kb on - strand, within EX31_RS08675 at 242.713 kb on + strand, within EX31_RS08675 at 242.713 kb on + strand, within EX31_RS08675 at 242.713 kb on + strand, within EX31_RS08675 at 242.714 kb on - strand, within EX31_RS08675 at 242.714 kb on - strand, within EX31_RS08675 at 242.714 kb on - strand, within EX31_RS08675 at 242.757 kb on - strand at 242.826 kb on + strand at 242.826 kb on + strand at 242.826 kb on + strand at 242.826 kb on + strand at 242.826 kb on + strand at 242.827 kb on - strand at 242.827 kb on - strand at 242.834 kb on + strand at 242.834 kb on + strand at 242.834 kb on + strand at 242.835 kb on - strand at 242.835 kb on - strand at 242.835 kb on - strand at 242.865 kb on + strand at 242.865 kb on + strand at 242.876 kb on + strand at 242.877 kb on - strand at 242.877 kb on - strand at 242.877 kb on - strand at 242.877 kb on - strand at 242.885 kb on + strand at 242.885 kb on + strand at 242.885 kb on + strand at 242.885 kb on + strand at 242.885 kb on + strand at 242.885 kb on + strand at 242.886 kb on - strand at 242.886 kb on - strand at 242.886 kb on - strand at 242.886 kb on - strand at 242.920 kb on + strand at 242.920 kb on + strand at 242.921 kb on - strand at 242.934 kb on - strand at 242.945 kb on + strand at 242.945 kb on + strand at 242.946 kb on - strand at 242.967 kb on + strand at 242.967 kb on + strand at 242.968 kb on - strand at 242.968 kb on - strand at 243.000 kb on - strand at 243.072 kb on + strand at 243.072 kb on + strand at 243.783 kb on - strand at 243.786 kb on + strand at 243.786 kb on + strand at 243.786 kb on + strand at 243.786 kb on + strand at 243.787 kb on - strand at 243.787 kb on - strand at 243.790 kb on - strand at 243.811 kb on - strand at 243.811 kb on - strand at 243.843 kb on + strand at 243.843 kb on + strand at 243.843 kb on + strand at 243.844 kb on - strand at 243.844 kb on - strand at 243.844 kb on - strand at 243.844 kb on - strand at 243.844 kb on - strand at 243.844 kb on - strand at 243.910 kb on + strand, within EX31_RS08685 at 243.911 kb on - strand, within EX31_RS08685 at 243.911 kb on - strand, within EX31_RS08685 at 243.911 kb on - strand, within EX31_RS08685 at 243.911 kb on - strand, within EX31_RS08685 at 243.911 kb on - strand, within EX31_RS08685 at 243.916 kb on + strand, within EX31_RS08685 at 243.917 kb on - strand, within EX31_RS08685 at 243.934 kb on + strand, within EX31_RS08685 at 243.934 kb on + strand, within EX31_RS08685 at 243.935 kb on - strand, within EX31_RS08685 at 243.935 kb on - strand, within EX31_RS08685 at 243.935 kb on - strand, within EX31_RS08685 at 243.971 kb on + strand, within EX31_RS08685 at 243.974 kb on + strand, within EX31_RS08685 at 243.991 kb on - strand, within EX31_RS08685 at 244.033 kb on + strand, within EX31_RS08685 at 244.034 kb on - strand, within EX31_RS08685 at 244.034 kb on - strand, within EX31_RS08685 at 244.053 kb on + strand, within EX31_RS08685 at 244.053 kb on + strand, within EX31_RS08685 at 244.054 kb on - strand, within EX31_RS08685 at 244.054 kb on - strand, within EX31_RS08685 at 244.054 kb on - strand, within EX31_RS08685 at 244.054 kb on - strand, within EX31_RS08685 at 244.055 kb on + strand, within EX31_RS08685 at 244.066 kb on + strand, within EX31_RS08685 at 244.079 kb on + strand, within EX31_RS08685 at 244.080 kb on - strand, within EX31_RS08685 at 244.080 kb on - strand, within EX31_RS08685 at 244.080 kb on - strand, within EX31_RS08685 at 244.080 kb on - strand, within EX31_RS08685 at 244.081 kb on + strand, within EX31_RS08685 at 244.081 kb on + strand, within EX31_RS08685 at 244.082 kb on - strand, within EX31_RS08685 at 244.082 kb on - strand, within EX31_RS08685 at 244.161 kb on + strand at 244.167 kb on - strand at 244.167 kb on - strand at 244.179 kb on + strand at 244.180 kb on - strand at 244.180 kb on - strand at 244.180 kb on - strand at 244.180 kb on - strand at 244.191 kb on + strand at 244.191 kb on + strand at 244.191 kb on + strand at 244.191 kb on + strand at 244.191 kb on + strand at 244.191 kb on + strand at 244.192 kb on - strand at 244.192 kb on - strand at 244.192 kb on - strand at 244.192 kb on - strand at 244.192 kb on - strand at 244.192 kb on - strand at 244.192 kb on - strand at 244.194 kb on - strand at 244.194 kb on - strand at 244.199 kb on + strand at 244.199 kb on + strand at 244.199 kb on + strand at 244.199 kb on + strand at 244.199 kb on + strand at 244.199 kb on + strand at 244.200 kb on - strand at 244.200 kb on - strand at 244.200 kb on - strand at 244.200 kb on - strand at 244.200 kb on - strand at 244.200 kb on - strand at 244.201 kb on + strand at 244.201 kb on + strand at 244.201 kb on + strand at 244.202 kb on - strand at 244.202 kb on - strand at 244.205 kb on - strand at 244.205 kb on - strand at 244.205 kb on - strand at 244.235 kb on + strand at 244.334 kb on - strand at 244.346 kb on + strand at 244.347 kb on - strand at 244.373 kb on + strand at 244.498 kb on - strand at 244.540 kb on + strand at 244.540 kb on + strand at 244.563 kb on - strand at 244.563 kb on - strand at 244.603 kb on + strand, within EX31_RS08690 at 244.636 kb on - strand, within EX31_RS08690 at 244.636 kb on - strand, within EX31_RS08690
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 242,315 + EX31_RS08675 0.64 +0.2 242,315 + EX31_RS08675 0.64 +1.9 242,354 + EX31_RS08675 0.66 -2.3 242,354 + EX31_RS08675 0.66 +0.0 242,355 - EX31_RS08675 0.66 +0.7 242,355 - EX31_RS08675 0.66 -0.5 242,355 - EX31_RS08675 0.66 +0.1 242,355 - EX31_RS08675 0.66 -0.9 242,355 - EX31_RS08675 0.66 +0.7 242,355 - EX31_RS08675 0.66 +0.8 242,357 + EX31_RS08675 0.66 +0.9 242,357 + EX31_RS08675 0.66 +1.4 242,357 + EX31_RS08675 0.66 -0.5 242,357 + EX31_RS08675 0.66 +1.3 242,358 - EX31_RS08675 0.66 +0.7 242,361 + EX31_RS08675 0.67 +1.5 242,361 + EX31_RS08675 0.67 +0.7 242,362 - EX31_RS08675 0.67 -1.4 242,368 + EX31_RS08675 0.67 +0.7 242,368 + EX31_RS08675 0.67 +0.6 242,368 + EX31_RS08675 0.67 -1.4 242,368 + EX31_RS08675 0.67 -0.6 242,369 - EX31_RS08675 0.67 +0.3 242,369 - EX31_RS08675 0.67 -0.7 242,369 - EX31_RS08675 0.67 +0.5 242,393 + EX31_RS08675 0.69 -2.3 242,394 - EX31_RS08675 0.69 -0.6 242,394 - EX31_RS08675 0.69 +0.3 242,394 - EX31_RS08675 0.69 +1.6 242,394 - EX31_RS08675 0.69 +0.6 242,398 + EX31_RS08675 0.69 -0.9 242,398 + EX31_RS08675 0.69 -0.0 242,398 + EX31_RS08675 0.69 +1.8 242,398 + EX31_RS08675 0.69 -2.3 242,398 + EX31_RS08675 0.69 -1.2 242,399 - EX31_RS08675 0.69 -0.3 242,399 - EX31_RS08675 0.69 +1.7 242,399 - EX31_RS08675 0.69 -1.1 242,399 - EX31_RS08675 0.69 -0.4 242,399 - EX31_RS08675 0.69 +0.2 242,410 + EX31_RS08675 0.70 -2.1 242,411 - EX31_RS08675 0.70 +1.2 242,411 - EX31_RS08675 0.70 -0.7 242,441 - EX31_RS08675 0.72 +0.7 242,441 - EX31_RS08675 0.72 +1.2 242,487 + EX31_RS08675 0.75 +0.3 242,488 - EX31_RS08675 0.75 -0.5 242,496 - EX31_RS08675 0.75 -0.3 242,496 - EX31_RS08675 0.75 -2.3 242,501 + EX31_RS08675 0.76 +0.7 242,503 + EX31_RS08675 0.76 -0.1 242,503 + EX31_RS08675 0.76 -0.9 242,504 - EX31_RS08675 0.76 -1.4 242,504 - EX31_RS08675 0.76 +0.2 242,504 - EX31_RS08675 0.76 -1.6 242,512 + EX31_RS08675 0.76 -1.8 242,512 + EX31_RS08675 0.76 -1.6 242,512 + EX31_RS08675 0.76 +0.7 242,512 + EX31_RS08675 0.76 +0.3 242,512 + EX31_RS08675 0.76 +0.2 242,513 - EX31_RS08675 0.76 -1.3 242,513 - EX31_RS08675 0.76 +0.3 242,513 - EX31_RS08675 0.76 +1.2 242,606 + EX31_RS08675 0.82 +1.2 242,606 + EX31_RS08675 0.82 -0.1 242,606 + EX31_RS08675 0.82 +1.1 242,608 + EX31_RS08675 0.82 +0.6 242,608 + EX31_RS08675 0.82 +0.5 242,608 + EX31_RS08675 0.82 +0.1 242,608 + EX31_RS08675 0.82 +0.7 242,609 - EX31_RS08675 0.82 +0.5 242,609 - EX31_RS08675 0.82 +1.7 242,631 - EX31_RS08675 0.84 -1.4 242,697 - EX31_RS08675 0.88 +0.7 242,713 + EX31_RS08675 0.89 +0.4 242,713 + EX31_RS08675 0.89 -0.1 242,713 + EX31_RS08675 0.89 -0.6 242,714 - EX31_RS08675 0.89 -1.0 242,714 - EX31_RS08675 0.89 -0.3 242,714 - EX31_RS08675 0.89 +0.7 242,757 - +0.3 242,826 + -1.6 242,826 + -0.6 242,826 + +0.1 242,826 + -0.5 242,826 + +2.5 242,827 - +2.0 242,827 - -1.0 242,834 + +0.3 242,834 + -1.1 242,834 + +0.1 242,835 - +0.7 242,835 - -0.0 242,835 - -0.7 242,865 + +0.2 242,865 + -1.0 242,876 + -0.1 242,877 - -0.3 242,877 - -1.3 242,877 - -1.2 242,877 - -1.2 242,885 + +1.2 242,885 + +1.7 242,885 + +0.7 242,885 + +0.1 242,885 + +0.5 242,885 + +0.4 242,886 - +0.0 242,886 - -1.1 242,886 - -0.0 242,886 - +1.1 242,920 + -2.8 242,920 + +1.9 242,921 - +0.5 242,934 - -0.2 242,945 + +0.0 242,945 + -0.4 242,946 - +0.7 242,967 + -0.3 242,967 + -1.6 242,968 - +0.7 242,968 - -0.9 243,000 - +1.7 243,072 + -2.6 243,072 + -0.3 243,783 - +0.7 243,786 + +0.7 243,786 + -0.8 243,786 + -1.8 243,786 + +0.4 243,787 - +1.7 243,787 - -0.3 243,790 - +0.7 243,811 - -0.3 243,811 - -1.9 243,843 + -3.3 243,843 + +3.7 243,843 + +0.7 243,844 - -2.0 243,844 - -1.3 243,844 - +0.3 243,844 - -0.1 243,844 - -0.2 243,844 - -0.6 243,910 + EX31_RS08685 0.21 +0.8 243,911 - EX31_RS08685 0.22 +0.7 243,911 - EX31_RS08685 0.22 -0.7 243,911 - EX31_RS08685 0.22 -0.6 243,911 - EX31_RS08685 0.22 -0.5 243,911 - EX31_RS08685 0.22 -0.6 243,916 + EX31_RS08685 0.23 -1.6 243,917 - EX31_RS08685 0.23 +1.4 243,934 + EX31_RS08685 0.28 +0.1 243,934 + EX31_RS08685 0.28 -0.3 243,935 - EX31_RS08685 0.29 +0.1 243,935 - EX31_RS08685 0.29 -1.1 243,935 - EX31_RS08685 0.29 -0.3 243,971 + EX31_RS08685 0.39 -1.1 243,974 + EX31_RS08685 0.40 -0.3 243,991 - EX31_RS08685 0.44 -1.1 244,033 + EX31_RS08685 0.56 +0.3 244,034 - EX31_RS08685 0.56 +0.2 244,034 - EX31_RS08685 0.56 -1.0 244,053 + EX31_RS08685 0.62 +1.9 244,053 + EX31_RS08685 0.62 -0.4 244,054 - EX31_RS08685 0.62 +0.0 244,054 - EX31_RS08685 0.62 +0.2 244,054 - EX31_RS08685 0.62 -1.4 244,054 - EX31_RS08685 0.62 -1.1 244,055 + EX31_RS08685 0.62 -1.1 244,066 + EX31_RS08685 0.66 -0.9 244,079 + EX31_RS08685 0.69 -0.6 244,080 - EX31_RS08685 0.69 +0.1 244,080 - EX31_RS08685 0.69 -0.8 244,080 - EX31_RS08685 0.69 +1.7 244,080 - EX31_RS08685 0.69 -1.2 244,081 + EX31_RS08685 0.70 +0.5 244,081 + EX31_RS08685 0.70 +0.0 244,082 - EX31_RS08685 0.70 -0.2 244,082 - EX31_RS08685 0.70 -1.7 244,161 + +0.7 244,167 - -1.6 244,167 - -0.8 244,179 + -1.3 244,180 - +1.5 244,180 - -0.8 244,180 - -0.1 244,180 - -1.6 244,191 + +0.6 244,191 + -1.1 244,191 + -1.3 244,191 + -0.3 244,191 + +1.3 244,191 + +0.3 244,192 - +0.8 244,192 - -0.9 244,192 - -0.3 244,192 - -1.6 244,192 - -0.4 244,192 - -2.2 244,192 - -0.4 244,194 - -1.5 244,194 - -2.5 244,199 + +0.2 244,199 + +1.7 244,199 + +0.3 244,199 + +1.1 244,199 + +3.5 244,199 + -0.5 244,200 - +2.3 244,200 - +0.1 244,200 - -0.1 244,200 - -2.5 244,200 - -0.1 244,200 - -0.5 244,201 + +2.4 244,201 + +0.4 244,201 + +0.5 244,202 - +1.7 244,202 - +1.2 244,205 - -0.4 244,205 - -0.7 244,205 - +1.1 244,235 + -0.3 244,334 - -0.3 244,346 + -0.4 244,347 - -0.6 244,373 + -2.0 244,498 - -0.7 244,540 + +0.7 244,540 + +2.2 244,563 - +0.0 244,563 - -1.3 244,603 + EX31_RS08690 0.10 -0.6 244,636 - EX31_RS08690 0.11 -0.4 244,636 - EX31_RS08690 0.11 +0.6
Or see this region's nucleotide sequence