Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06040 and EX31_RS06045 are separated by 110 nucleotides EX31_RS06045 and EX31_RS06050 are separated by 84 nucleotides EX31_RS06050 and EX31_RS06055 are separated by 10 nucleotides EX31_RS06055 and EX31_RS06060 are separated by 92 nucleotides
EX31_RS06040: EX31_RS06040 - sugar phosphate isomerase/epimerase, at 368,951 to 369,781
_RS06040
EX31_RS06045: EX31_RS06045 - TetR family transcriptional regulator, at 369,892 to 370,584
_RS06045
EX31_RS06050: EX31_RS06050 - phosphate signaling complex protein PhoU, at 370,669 to 371,400
_RS06050
EX31_RS06055: EX31_RS06055 - phosphate ABC transporter ATP-binding protein PstB, at 371,411 to 372,178
_RS06055
EX31_RS06060: EX31_RS06060 - phosphate ABC transporter permease PstA, at 372,271 to 373,158
_RS06060
Position (kb) 370
371
372 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 369.754 kb on + strand at 369.754 kb on + strand at 369.754 kb on + strand at 369.755 kb on - strand at 369.755 kb on - strand at 369.755 kb on - strand at 369.755 kb on - strand at 369.755 kb on - strand at 369.761 kb on + strand at 369.761 kb on + strand at 369.761 kb on + strand at 369.762 kb on - strand at 369.784 kb on + strand at 369.784 kb on + strand at 369.784 kb on + strand at 369.784 kb on + strand at 369.784 kb on + strand at 369.784 kb on + strand at 369.785 kb on - strand at 369.785 kb on - strand at 369.785 kb on - strand at 369.785 kb on - strand at 369.785 kb on - strand at 369.785 kb on - strand at 369.785 kb on - strand at 369.795 kb on + strand at 369.796 kb on - strand at 369.809 kb on + strand at 369.809 kb on + strand at 369.809 kb on + strand at 369.810 kb on - strand at 369.813 kb on + strand at 369.813 kb on + strand at 369.813 kb on + strand at 369.813 kb on + strand at 369.813 kb on + strand at 369.813 kb on + strand at 369.813 kb on + strand at 369.813 kb on + strand at 369.813 kb on + strand at 369.813 kb on + strand at 369.813 kb on + strand at 369.813 kb on + strand at 369.814 kb on - strand at 369.814 kb on - strand at 369.814 kb on - strand at 369.814 kb on - strand at 369.814 kb on - strand at 369.814 kb on - strand at 369.814 kb on - strand at 369.814 kb on - strand at 369.814 kb on - strand at 369.814 kb on - strand at 369.814 kb on - strand at 369.814 kb on - strand at 369.814 kb on - strand at 369.818 kb on + strand at 369.818 kb on + strand at 369.819 kb on - strand at 369.860 kb on + strand at 369.860 kb on + strand at 369.860 kb on + strand at 369.860 kb on + strand at 369.860 kb on + strand at 369.860 kb on + strand at 369.860 kb on + strand at 369.861 kb on - strand at 369.861 kb on - strand at 369.861 kb on - strand at 369.861 kb on - strand at 369.877 kb on + strand at 369.878 kb on - strand at 369.878 kb on - strand at 369.933 kb on + strand at 369.933 kb on + strand at 369.933 kb on + strand at 369.933 kb on + strand at 369.934 kb on - strand at 369.972 kb on + strand, within EX31_RS06045 at 369.973 kb on - strand, within EX31_RS06045 at 369.973 kb on - strand, within EX31_RS06045 at 370.066 kb on - strand, within EX31_RS06045 at 370.066 kb on - strand, within EX31_RS06045 at 370.095 kb on + strand, within EX31_RS06045 at 370.095 kb on + strand, within EX31_RS06045 at 370.095 kb on + strand, within EX31_RS06045 at 370.095 kb on + strand, within EX31_RS06045 at 370.095 kb on + strand, within EX31_RS06045 at 370.095 kb on + strand, within EX31_RS06045 at 370.095 kb on + strand, within EX31_RS06045 at 370.095 kb on + strand, within EX31_RS06045 at 370.095 kb on + strand, within EX31_RS06045 at 370.095 kb on + strand, within EX31_RS06045 at 370.096 kb on - strand, within EX31_RS06045 at 370.096 kb on - strand, within EX31_RS06045 at 370.096 kb on - strand, within EX31_RS06045 at 370.105 kb on + strand, within EX31_RS06045 at 370.106 kb on - strand, within EX31_RS06045 at 370.111 kb on + strand, within EX31_RS06045 at 370.111 kb on + strand, within EX31_RS06045 at 370.111 kb on + strand, within EX31_RS06045 at 370.111 kb on + strand, within EX31_RS06045 at 370.111 kb on + strand, within EX31_RS06045 at 370.111 kb on + strand, within EX31_RS06045 at 370.111 kb on + strand, within EX31_RS06045 at 370.111 kb on + strand, within EX31_RS06045 at 370.111 kb on + strand, within EX31_RS06045 at 370.111 kb on + strand, within EX31_RS06045 at 370.112 kb on - strand, within EX31_RS06045 at 370.112 kb on - strand, within EX31_RS06045 at 370.112 kb on - strand, within EX31_RS06045 at 370.113 kb on + strand, within EX31_RS06045 at 370.113 kb on + strand, within EX31_RS06045 at 370.113 kb on + strand, within EX31_RS06045 at 370.114 kb on - strand, within EX31_RS06045 at 370.114 kb on - strand, within EX31_RS06045 at 370.114 kb on - strand, within EX31_RS06045 at 370.114 kb on - strand, within EX31_RS06045 at 370.114 kb on - strand, within EX31_RS06045 at 370.114 kb on - strand, within EX31_RS06045 at 370.114 kb on - strand, within EX31_RS06045 at 370.114 kb on - strand, within EX31_RS06045 at 370.114 kb on - strand, within EX31_RS06045 at 370.114 kb on - strand, within EX31_RS06045 at 370.114 kb on - strand, within EX31_RS06045 at 370.114 kb on - strand, within EX31_RS06045 at 370.132 kb on + strand, within EX31_RS06045 at 370.132 kb on + strand, within EX31_RS06045 at 370.132 kb on + strand, within EX31_RS06045 at 370.132 kb on + strand, within EX31_RS06045 at 370.132 kb on + strand, within EX31_RS06045 at 370.132 kb on + strand, within EX31_RS06045 at 370.132 kb on + strand, within EX31_RS06045 at 370.132 kb on + strand, within EX31_RS06045 at 370.132 kb on + strand, within EX31_RS06045 at 370.132 kb on + strand, within EX31_RS06045 at 370.132 kb on + strand, within EX31_RS06045 at 370.132 kb on + strand, within EX31_RS06045 at 370.132 kb on + strand, within EX31_RS06045 at 370.132 kb on + strand, within EX31_RS06045 at 370.133 kb on - strand, within EX31_RS06045 at 370.133 kb on - strand, within EX31_RS06045 at 370.133 kb on - strand, within EX31_RS06045 at 370.133 kb on - strand, within EX31_RS06045 at 370.133 kb on - strand, within EX31_RS06045 at 370.133 kb on - strand, within EX31_RS06045 at 370.157 kb on - strand, within EX31_RS06045 at 370.193 kb on + strand, within EX31_RS06045 at 370.193 kb on + strand, within EX31_RS06045 at 370.193 kb on + strand, within EX31_RS06045 at 370.193 kb on + strand, within EX31_RS06045 at 370.194 kb on - strand, within EX31_RS06045 at 370.194 kb on - strand, within EX31_RS06045 at 370.194 kb on - strand, within EX31_RS06045 at 370.194 kb on - strand, within EX31_RS06045 at 370.194 kb on - strand, within EX31_RS06045 at 370.273 kb on - strand, within EX31_RS06045 at 370.283 kb on + strand, within EX31_RS06045 at 370.284 kb on - strand, within EX31_RS06045 at 370.284 kb on - strand, within EX31_RS06045 at 370.359 kb on - strand, within EX31_RS06045 at 370.407 kb on + strand, within EX31_RS06045 at 370.480 kb on + strand, within EX31_RS06045 at 370.481 kb on - strand, within EX31_RS06045 at 370.482 kb on + strand, within EX31_RS06045 at 370.482 kb on + strand, within EX31_RS06045 at 370.482 kb on + strand, within EX31_RS06045 at 370.482 kb on + strand, within EX31_RS06045 at 370.482 kb on + strand, within EX31_RS06045 at 370.482 kb on + strand, within EX31_RS06045 at 370.482 kb on + strand, within EX31_RS06045 at 370.482 kb on + strand, within EX31_RS06045 at 370.482 kb on + strand, within EX31_RS06045 at 370.482 kb on + strand, within EX31_RS06045 at 370.482 kb on + strand, within EX31_RS06045 at 370.482 kb on + strand, within EX31_RS06045 at 370.482 kb on + strand, within EX31_RS06045 at 370.482 kb on + strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.483 kb on - strand, within EX31_RS06045 at 370.523 kb on + strand at 370.523 kb on + strand at 370.524 kb on - strand at 370.524 kb on - strand at 370.538 kb on - strand at 370.570 kb on + strand at 370.570 kb on + strand at 370.583 kb on - strand at 370.583 kb on - strand at 370.583 kb on - strand at 370.605 kb on + strand at 370.607 kb on + strand at 370.607 kb on + strand at 370.607 kb on + strand at 370.607 kb on + strand at 370.607 kb on + strand at 370.607 kb on + strand at 370.608 kb on - strand at 370.608 kb on - strand at 370.608 kb on - strand at 370.608 kb on - strand at 370.608 kb on - strand at 370.662 kb on + strand at 370.707 kb on + strand at 370.798 kb on - strand, within EX31_RS06050 at 370.869 kb on - strand, within EX31_RS06050 at 371.384 kb on - strand at 371.408 kb on - strand at 371.408 kb on - strand at 371.429 kb on - strand at 371.434 kb on - strand at 371.434 kb on - strand at 371.434 kb on - strand at 371.434 kb on - strand at 371.434 kb on - strand at 371.434 kb on - strand at 371.488 kb on - strand, within EX31_RS06055 at 371.509 kb on - strand, within EX31_RS06055 at 371.509 kb on - strand, within EX31_RS06055 at 371.509 kb on - strand, within EX31_RS06055 at 371.509 kb on - strand, within EX31_RS06055 at 371.509 kb on - strand, within EX31_RS06055 at 371.513 kb on - strand, within EX31_RS06055 at 371.696 kb on - strand, within EX31_RS06055 at 371.731 kb on - strand, within EX31_RS06055 at 371.731 kb on - strand, within EX31_RS06055 at 371.939 kb on - strand, within EX31_RS06055 at 371.939 kb on - strand, within EX31_RS06055 at 371.939 kb on - strand, within EX31_RS06055 at 371.939 kb on - strand, within EX31_RS06055 at 372.041 kb on - strand, within EX31_RS06055 at 372.130 kb on - strand at 372.224 kb on - strand at 372.334 kb on - strand at 372.344 kb on - strand at 372.344 kb on - strand at 372.344 kb on - strand at 372.397 kb on - strand, within EX31_RS06060
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 369,754 + -1.4 369,754 + -0.9 369,754 + +0.7 369,755 - -2.3 369,755 - +1.5 369,755 - +0.6 369,755 - +0.2 369,755 - +0.2 369,761 + -0.5 369,761 + +1.4 369,761 + +1.4 369,762 - +0.8 369,784 + -1.8 369,784 + +0.6 369,784 + -0.5 369,784 + +1.1 369,784 + +2.4 369,784 + -0.0 369,785 - +0.5 369,785 - -1.3 369,785 - -0.9 369,785 - -0.6 369,785 - -0.0 369,785 - -1.5 369,785 - -0.0 369,795 + -0.2 369,796 - -1.8 369,809 + -1.9 369,809 + +0.2 369,809 + -0.8 369,810 - -1.1 369,813 + +1.2 369,813 + -0.5 369,813 + -1.3 369,813 + +0.4 369,813 + +0.7 369,813 + +1.1 369,813 + -1.1 369,813 + -0.3 369,813 + -0.0 369,813 + -0.2 369,813 + +1.6 369,813 + +0.1 369,814 - +1.7 369,814 - +0.6 369,814 - +0.3 369,814 - +1.5 369,814 - -0.7 369,814 - +1.8 369,814 - -1.9 369,814 - +0.7 369,814 - -1.9 369,814 - -2.5 369,814 - -1.3 369,814 - -1.8 369,814 - -0.0 369,818 + +0.2 369,818 + +0.7 369,819 - -1.4 369,860 + +0.9 369,860 + -0.8 369,860 + +0.1 369,860 + +1.5 369,860 + +0.7 369,860 + -0.3 369,860 + -0.4 369,861 - +0.5 369,861 - +0.7 369,861 - -1.0 369,861 - -1.6 369,877 + -1.3 369,878 - -0.5 369,878 - +0.3 369,933 + -0.0 369,933 + +0.5 369,933 + -0.3 369,933 + -0.5 369,934 - +0.1 369,972 + EX31_RS06045 0.12 +0.8 369,973 - EX31_RS06045 0.12 -1.6 369,973 - EX31_RS06045 0.12 -0.8 370,066 - EX31_RS06045 0.25 -0.8 370,066 - EX31_RS06045 0.25 -0.8 370,095 + EX31_RS06045 0.29 +0.4 370,095 + EX31_RS06045 0.29 -0.8 370,095 + EX31_RS06045 0.29 -0.8 370,095 + EX31_RS06045 0.29 -1.6 370,095 + EX31_RS06045 0.29 -0.3 370,095 + EX31_RS06045 0.29 +0.4 370,095 + EX31_RS06045 0.29 -1.1 370,095 + EX31_RS06045 0.29 +0.0 370,095 + EX31_RS06045 0.29 -0.1 370,095 + EX31_RS06045 0.29 +0.4 370,096 - EX31_RS06045 0.29 -1.1 370,096 - EX31_RS06045 0.29 +1.5 370,096 - EX31_RS06045 0.29 +0.0 370,105 + EX31_RS06045 0.31 -0.1 370,106 - EX31_RS06045 0.31 +0.6 370,111 + EX31_RS06045 0.32 -0.5 370,111 + EX31_RS06045 0.32 -0.6 370,111 + EX31_RS06045 0.32 -0.2 370,111 + EX31_RS06045 0.32 +3.4 370,111 + EX31_RS06045 0.32 -2.6 370,111 + EX31_RS06045 0.32 -2.0 370,111 + EX31_RS06045 0.32 -1.5 370,111 + EX31_RS06045 0.32 -1.1 370,111 + EX31_RS06045 0.32 -0.6 370,111 + EX31_RS06045 0.32 -1.1 370,112 - EX31_RS06045 0.32 +0.1 370,112 - EX31_RS06045 0.32 -0.7 370,112 - EX31_RS06045 0.32 -0.1 370,113 + EX31_RS06045 0.32 -2.3 370,113 + EX31_RS06045 0.32 -2.6 370,113 + EX31_RS06045 0.32 +0.8 370,114 - EX31_RS06045 0.32 -1.2 370,114 - EX31_RS06045 0.32 -0.2 370,114 - EX31_RS06045 0.32 -0.2 370,114 - EX31_RS06045 0.32 -1.0 370,114 - EX31_RS06045 0.32 -1.3 370,114 - EX31_RS06045 0.32 -0.6 370,114 - EX31_RS06045 0.32 +1.0 370,114 - EX31_RS06045 0.32 -1.7 370,114 - EX31_RS06045 0.32 -1.2 370,114 - EX31_RS06045 0.32 -0.1 370,114 - EX31_RS06045 0.32 -1.1 370,114 - EX31_RS06045 0.32 -0.8 370,132 + EX31_RS06045 0.35 +0.4 370,132 + EX31_RS06045 0.35 +0.5 370,132 + EX31_RS06045 0.35 +0.3 370,132 + EX31_RS06045 0.35 +0.6 370,132 + EX31_RS06045 0.35 -1.3 370,132 + EX31_RS06045 0.35 +0.8 370,132 + EX31_RS06045 0.35 -1.6 370,132 + EX31_RS06045 0.35 -2.3 370,132 + EX31_RS06045 0.35 +1.5 370,132 + EX31_RS06045 0.35 -1.2 370,132 + EX31_RS06045 0.35 -0.6 370,132 + EX31_RS06045 0.35 +0.6 370,132 + EX31_RS06045 0.35 -0.4 370,132 + EX31_RS06045 0.35 -0.5 370,133 - EX31_RS06045 0.35 -2.5 370,133 - EX31_RS06045 0.35 +1.8 370,133 - EX31_RS06045 0.35 -1.3 370,133 - EX31_RS06045 0.35 -0.7 370,133 - EX31_RS06045 0.35 -1.6 370,133 - EX31_RS06045 0.35 -0.6 370,157 - EX31_RS06045 0.38 +1.5 370,193 + EX31_RS06045 0.43 +1.0 370,193 + EX31_RS06045 0.43 -0.8 370,193 + EX31_RS06045 0.43 +0.5 370,193 + EX31_RS06045 0.43 -0.2 370,194 - EX31_RS06045 0.44 +0.3 370,194 - EX31_RS06045 0.44 -0.3 370,194 - EX31_RS06045 0.44 -0.1 370,194 - EX31_RS06045 0.44 -1.0 370,194 - EX31_RS06045 0.44 -0.5 370,273 - EX31_RS06045 0.55 -1.4 370,283 + EX31_RS06045 0.56 -1.1 370,284 - EX31_RS06045 0.57 -1.5 370,284 - EX31_RS06045 0.57 +1.0 370,359 - EX31_RS06045 0.67 -0.2 370,407 + EX31_RS06045 0.74 +0.8 370,480 + EX31_RS06045 0.85 -0.2 370,481 - EX31_RS06045 0.85 -1.9 370,482 + EX31_RS06045 0.85 -0.4 370,482 + EX31_RS06045 0.85 +0.3 370,482 + EX31_RS06045 0.85 -0.0 370,482 + EX31_RS06045 0.85 +1.8 370,482 + EX31_RS06045 0.85 -0.2 370,482 + EX31_RS06045 0.85 -0.3 370,482 + EX31_RS06045 0.85 +0.5 370,482 + EX31_RS06045 0.85 -0.2 370,482 + EX31_RS06045 0.85 -0.5 370,482 + EX31_RS06045 0.85 +1.3 370,482 + EX31_RS06045 0.85 +0.9 370,482 + EX31_RS06045 0.85 -1.2 370,482 + EX31_RS06045 0.85 +0.2 370,482 + EX31_RS06045 0.85 -1.8 370,483 - EX31_RS06045 0.85 +0.5 370,483 - EX31_RS06045 0.85 -0.1 370,483 - EX31_RS06045 0.85 -1.0 370,483 - EX31_RS06045 0.85 +0.2 370,483 - EX31_RS06045 0.85 +0.8 370,483 - EX31_RS06045 0.85 +1.0 370,483 - EX31_RS06045 0.85 +0.2 370,483 - EX31_RS06045 0.85 -0.6 370,483 - EX31_RS06045 0.85 +0.1 370,483 - EX31_RS06045 0.85 -0.5 370,483 - EX31_RS06045 0.85 +0.1 370,483 - EX31_RS06045 0.85 +0.5 370,483 - EX31_RS06045 0.85 -0.6 370,483 - EX31_RS06045 0.85 +0.7 370,483 - EX31_RS06045 0.85 +0.2 370,483 - EX31_RS06045 0.85 +0.7 370,483 - EX31_RS06045 0.85 -0.2 370,483 - EX31_RS06045 0.85 -0.2 370,483 - EX31_RS06045 0.85 -0.9 370,483 - EX31_RS06045 0.85 -0.4 370,483 - EX31_RS06045 0.85 -0.3 370,523 + +1.1 370,523 + +1.1 370,524 - -0.3 370,524 - -0.2 370,538 - +0.1 370,570 + -0.3 370,570 + +0.1 370,583 - +1.7 370,583 - +0.7 370,583 - -0.1 370,605 + +0.5 370,607 + -0.3 370,607 + -0.2 370,607 + -2.3 370,607 + -0.5 370,607 + +2.5 370,607 + +0.2 370,608 - +1.7 370,608 - +0.7 370,608 - +0.2 370,608 - -1.0 370,608 - -0.4 370,662 + +0.2 370,707 + +0.5 370,798 - EX31_RS06050 0.18 +0.2 370,869 - EX31_RS06050 0.27 +0.6 371,384 - +0.8 371,408 - +2.2 371,408 - +0.6 371,429 - -1.3 371,434 - -0.8 371,434 - -0.4 371,434 - -1.0 371,434 - +0.7 371,434 - -2.6 371,434 - -0.5 371,488 - EX31_RS06055 0.10 -2.0 371,509 - EX31_RS06055 0.13 +1.8 371,509 - EX31_RS06055 0.13 -0.2 371,509 - EX31_RS06055 0.13 -0.2 371,509 - EX31_RS06055 0.13 -1.0 371,509 - EX31_RS06055 0.13 -0.2 371,513 - EX31_RS06055 0.13 -1.0 371,696 - EX31_RS06055 0.37 -0.8 371,731 - EX31_RS06055 0.42 -2.7 371,731 - EX31_RS06055 0.42 +0.8 371,939 - EX31_RS06055 0.69 -0.3 371,939 - EX31_RS06055 0.69 -0.2 371,939 - EX31_RS06055 0.69 +1.8 371,939 - EX31_RS06055 0.69 -1.9 372,041 - EX31_RS06055 0.82 -0.5 372,130 - -0.9 372,224 - +0.7 372,334 - +0.9 372,344 - +0.2 372,344 - +0.0 372,344 - +1.5 372,397 - EX31_RS06060 0.14 -1.0
Or see this region's nucleotide sequence