Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29010

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29005 and BPHYT_RS29010 overlap by 4 nucleotidesBPHYT_RS29010 and BPHYT_RS29015 are separated by 136 nucleotides BPHYT_RS29005: BPHYT_RS29005 - transporter, at 2,062,634 to 2,065,765 _RS29005 BPHYT_RS29010: BPHYT_RS29010 - RND transporter, at 2,065,762 to 2,066,724 _RS29010 BPHYT_RS29015: BPHYT_RS29015 - RND transporter, at 2,066,861 to 2,068,432 _RS29015 Position (kb) 2065 2066 2067Strain fitness (log2 ratio) -1 0 1at 2064.962 kb on + strand, within BPHYT_RS29005at 2065.348 kb on - strand, within BPHYT_RS29005at 2065.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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2,064,962 + BPHYT_RS29005 0.74 +0.2
2,065,348 - BPHYT_RS29005 0.87 -0.5
2,065,663 - -0.8

Or see this region's nucleotide sequence