Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23540

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23530 and BPHYT_RS23535 are separated by 190 nucleotidesBPHYT_RS23535 and BPHYT_RS23540 are separated by 32 nucleotidesBPHYT_RS23540 and BPHYT_RS23545 overlap by 4 nucleotides BPHYT_RS23530: BPHYT_RS23530 - hypothetical protein, at 846,563 to 846,790 _RS23530 BPHYT_RS23535: BPHYT_RS23535 - ABC transporter substrate-binding protein, at 846,981 to 847,700 _RS23535 BPHYT_RS23540: BPHYT_RS23540 - RND transporter, at 847,733 to 849,241 _RS23540 BPHYT_RS23545: BPHYT_RS23545 - nodulation protein, at 849,238 to 852,558 _RS23545 Position (kb) 847 848 849 850Strain fitness (log2 ratio) -1 0 1at 846.877 kb on + strandat 846.882 kb on - strandat 847.433 kb on - strand, within BPHYT_RS23535at 847.433 kb on - strand, within BPHYT_RS23535at 848.175 kb on + strand, within BPHYT_RS23540at 848.175 kb on + strand, within BPHYT_RS23540at 848.176 kb on - strand, within BPHYT_RS23540at 849.351 kb on - strandat 849.756 kb on - strand, within BPHYT_RS23545at 849.812 kb on + strand, within BPHYT_RS23545

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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846,877 + -0.3
846,882 - -1.7
847,433 - BPHYT_RS23535 0.63 -0.4
847,433 - BPHYT_RS23535 0.63 -0.2
848,175 + BPHYT_RS23540 0.29 +0.3
848,175 + BPHYT_RS23540 0.29 -0.7
848,176 - BPHYT_RS23540 0.29 -0.8
849,351 - -0.0
849,756 - BPHYT_RS23545 0.16 -0.2
849,812 + BPHYT_RS23545 0.17 +0.6

Or see this region's nucleotide sequence