Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12900

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_12895 and AO356_12900 are separated by 78 nucleotidesAO356_12900 and AO356_12905 are separated by 199 nucleotidesAO356_12905 and AO356_12910 overlap by 14 nucleotides AO356_12895: AO356_12895 - polyphosphate kinase, at 2,935,176 to 2,937,392 _12895 AO356_12900: AO356_12900 - exopolyphosphatase, at 2,937,471 to 2,938,973 _12900 AO356_12905: AO356_12905 - amino acid ABC transporter ATP-binding protein, at 2,939,173 to 2,939,910 _12905 AO356_12910: AO356_12910 - amino acid ABC transporter permease, at 2,939,897 to 2,940,547 _12910 Position (kb) 2937 2938 2939Strain fitness (log2 ratio) -2 -1 0 1 2at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.599 kb on - strand, within AO356_12895at 2936.599 kb on - strand, within AO356_12895at 2936.599 kb on - strand, within AO356_12895at 2936.673 kb on + strand, within AO356_12895at 2936.697 kb on + strand, within AO356_12895at 2936.697 kb on + strand, within AO356_12895at 2936.697 kb on + strand, within AO356_12895at 2936.697 kb on + strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.721 kb on + strand, within AO356_12895at 2936.721 kb on + strand, within AO356_12895at 2936.721 kb on + strand, within AO356_12895at 2936.721 kb on + strand, within AO356_12895at 2936.730 kb on + strand, within AO356_12895at 2936.730 kb on + strand, within AO356_12895at 2936.731 kb on - strand, within AO356_12895at 2936.731 kb on - strand, within AO356_12895at 2936.731 kb on - strand, within AO356_12895at 2936.967 kb on + strand, within AO356_12895at 2936.967 kb on + strand, within AO356_12895at 2936.967 kb on + strand, within AO356_12895at 2936.967 kb on + strand, within AO356_12895at 2936.967 kb on + strand, within AO356_12895at 2936.968 kb on - strand, within AO356_12895at 2936.968 kb on - strand, within AO356_12895at 2936.968 kb on - strand, within AO356_12895at 2936.968 kb on - strand, within AO356_12895at 2936.968 kb on - strand, within AO356_12895at 2936.968 kb on - strand, within AO356_12895at 2936.968 kb on - strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.108 kb on + strand, within AO356_12895at 2937.108 kb on + strand, within AO356_12895at 2937.108 kb on + strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.249 kb on + strandat 2937.249 kb on + strandat 2937.249 kb on + strandat 2937.280 kb on + strandat 2937.280 kb on + strandat 2937.281 kb on - strandat 2937.281 kb on - strandat 2937.281 kb on - strandat 2937.297 kb on + strandat 2937.297 kb on + strandat 2937.298 kb on - strandat 2937.298 kb on - strandat 2937.298 kb on - strandat 2937.298 kb on - strandat 2937.391 kb on - strandat 2937.391 kb on - strandat 2937.462 kb on + strandat 2937.463 kb on - strandat 2937.463 kb on - strandat 2937.463 kb on - strandat 2937.670 kb on - strand, within AO356_12900at 2937.719 kb on + strand, within AO356_12900at 2937.719 kb on + strand, within AO356_12900at 2937.720 kb on - strand, within AO356_12900at 2937.756 kb on + strand, within AO356_12900at 2937.757 kb on - strand, within AO356_12900at 2937.817 kb on + strand, within AO356_12900at 2937.817 kb on + strand, within AO356_12900at 2937.842 kb on - strand, within AO356_12900at 2937.997 kb on + strand, within AO356_12900at 2938.067 kb on - strand, within AO356_12900at 2938.459 kb on + strand, within AO356_12900at 2938.600 kb on + strand, within AO356_12900at 2938.601 kb on - strand, within AO356_12900at 2939.714 kb on + strand, within AO356_12905at 2939.715 kb on - strand, within AO356_12905at 2939.873 kb on + strandat 2939.873 kb on + strandat 2939.874 kb on - strandat 2939.874 kb on - strandat 2939.874 kb on - strandat 2939.874 kb on - strandat 2939.876 kb on + strandat 2939.876 kb on + strandat 2939.876 kb on + strandat 2939.876 kb on + strandat 2939.876 kb on + strandat 2939.876 kb on + strandat 2939.876 kb on + strandat 2939.876 kb on + strandat 2939.876 kb on + strandat 2939.876 kb on + strandat 2939.876 kb on + strandat 2939.876 kb on + strandat 2939.876 kb on + strandat 2939.876 kb on + strandat 2939.876 kb on + strandat 2939.877 kb on - strandat 2939.877 kb on - strandat 2939.877 kb on - strandat 2939.877 kb on - strandat 2939.877 kb on - strandat 2939.877 kb on - strandat 2939.877 kb on - strandat 2939.877 kb on - strandat 2939.877 kb on - strandat 2939.880 kb on + strandat 2939.880 kb on + strandat 2939.880 kb on + strandat 2939.881 kb on - strandat 2939.881 kb on - strandat 2939.881 kb on - strandat 2939.881 kb on - strandat 2939.881 kb on - strandat 2939.881 kb on - strandat 2939.881 kb on - strandat 2939.892 kb on + strandat 2939.898 kb on + strandat 2939.898 kb on + strandat 2939.898 kb on + strandat 2939.898 kb on + strandat 2939.898 kb on + strandat 2939.898 kb on + strandat 2939.898 kb on + strandat 2939.898 kb on + strandat 2939.898 kb on + strandat 2939.898 kb on + strandat 2939.898 kb on + strandat 2939.899 kb on - strandat 2939.899 kb on - strandat 2939.899 kb on - strandat 2939.967 kb on + strand, within AO356_12910

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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2,936,598 + AO356_12895 0.64 +1.4
2,936,598 + AO356_12895 0.64 +0.8
2,936,598 + AO356_12895 0.64 +1.3
2,936,598 + AO356_12895 0.64 +0.2
2,936,598 + AO356_12895 0.64 +1.0
2,936,598 + AO356_12895 0.64 +0.9
2,936,598 + AO356_12895 0.64 +0.9
2,936,598 + AO356_12895 0.64 +1.2
2,936,598 + AO356_12895 0.64 +0.7
2,936,599 - AO356_12895 0.64 +0.6
2,936,599 - AO356_12895 0.64 +0.4
2,936,599 - AO356_12895 0.64 +0.7
2,936,673 + AO356_12895 0.68 +1.0
2,936,697 + AO356_12895 0.69 +1.1
2,936,697 + AO356_12895 0.69 +1.1
2,936,697 + AO356_12895 0.69 +0.9
2,936,697 + AO356_12895 0.69 +0.8
2,936,698 - AO356_12895 0.69 +1.0
2,936,698 - AO356_12895 0.69 +1.5
2,936,698 - AO356_12895 0.69 +1.1
2,936,698 - AO356_12895 0.69 +0.4
2,936,698 - AO356_12895 0.69 +1.3
2,936,698 - AO356_12895 0.69 +1.1
2,936,698 - AO356_12895 0.69 +1.5
2,936,698 - AO356_12895 0.69 +0.7
2,936,721 + AO356_12895 0.70 +1.0
2,936,721 + AO356_12895 0.70 +0.9
2,936,721 + AO356_12895 0.70 +1.1
2,936,721 + AO356_12895 0.70 +1.1
2,936,730 + AO356_12895 0.70 +1.1
2,936,730 + AO356_12895 0.70 +0.7
2,936,731 - AO356_12895 0.70 +1.5
2,936,731 - AO356_12895 0.70 +0.8
2,936,731 - AO356_12895 0.70 +1.2
2,936,967 + AO356_12895 0.81 +1.3
2,936,967 + AO356_12895 0.81 +0.6
2,936,967 + AO356_12895 0.81 +0.9
2,936,967 + AO356_12895 0.81 +0.9
2,936,967 + AO356_12895 0.81 -0.5
2,936,968 - AO356_12895 0.81 +0.9
2,936,968 - AO356_12895 0.81 +0.2
2,936,968 - AO356_12895 0.81 +0.4
2,936,968 - AO356_12895 0.81 +0.9
2,936,968 - AO356_12895 0.81 +1.0
2,936,968 - AO356_12895 0.81 +0.7
2,936,968 - AO356_12895 0.81 +0.9
2,937,064 + AO356_12895 0.85 +0.8
2,937,064 + AO356_12895 0.85 +1.3
2,937,064 + AO356_12895 0.85 +1.2
2,937,064 + AO356_12895 0.85 +0.6
2,937,064 + AO356_12895 0.85 +1.2
2,937,064 + AO356_12895 0.85 +0.7
2,937,064 + AO356_12895 0.85 +1.4
2,937,064 + AO356_12895 0.85 +1.1
2,937,064 + AO356_12895 0.85 +0.6
2,937,064 + AO356_12895 0.85 +1.5
2,937,064 + AO356_12895 0.85 +0.8
2,937,065 - AO356_12895 0.85 +1.5
2,937,065 - AO356_12895 0.85 +1.0
2,937,065 - AO356_12895 0.85 +0.5
2,937,065 - AO356_12895 0.85 +0.6
2,937,065 - AO356_12895 0.85 +1.3
2,937,065 - AO356_12895 0.85 +0.8
2,937,065 - AO356_12895 0.85 +1.2
2,937,065 - AO356_12895 0.85 +0.8
2,937,108 + AO356_12895 0.87 +1.1
2,937,108 + AO356_12895 0.87 +1.0
2,937,108 + AO356_12895 0.87 +1.3
2,937,109 - AO356_12895 0.87 +1.0
2,937,109 - AO356_12895 0.87 +1.1
2,937,109 - AO356_12895 0.87 +0.6
2,937,109 - AO356_12895 0.87 +0.7
2,937,109 - AO356_12895 0.87 +0.7
2,937,109 - AO356_12895 0.87 -0.1
2,937,109 - AO356_12895 0.87 +0.3
2,937,109 - AO356_12895 0.87 +0.4
2,937,109 - AO356_12895 0.87 +1.0
2,937,109 - AO356_12895 0.87 +0.8
2,937,109 - AO356_12895 0.87 +0.8
2,937,109 - AO356_12895 0.87 +0.9
2,937,249 + +1.2
2,937,249 + +1.4
2,937,249 + +0.7
2,937,280 + +0.5
2,937,280 + +1.2
2,937,281 - +1.6
2,937,281 - +1.7
2,937,281 - +0.9
2,937,297 + +1.2
2,937,297 + +0.9
2,937,298 - +1.1
2,937,298 - +0.5
2,937,298 - +1.2
2,937,298 - +2.3
2,937,391 - -1.0
2,937,391 - +0.2
2,937,462 + -0.5
2,937,463 - +0.2
2,937,463 - +0.7
2,937,463 - +0.4
2,937,670 - AO356_12900 0.13 -0.3
2,937,719 + AO356_12900 0.17 -1.3
2,937,719 + AO356_12900 0.17 +0.2
2,937,720 - AO356_12900 0.17 -2.4
2,937,756 + AO356_12900 0.19 +1.8
2,937,757 - AO356_12900 0.19 -0.6
2,937,817 + AO356_12900 0.23 -1.6
2,937,817 + AO356_12900 0.23 -0.2
2,937,842 - AO356_12900 0.25 +0.9
2,937,997 + AO356_12900 0.35 -0.6
2,938,067 - AO356_12900 0.40 +0.5
2,938,459 + AO356_12900 0.66 +0.2
2,938,600 + AO356_12900 0.75 -0.1
2,938,601 - AO356_12900 0.75 -0.6
2,939,714 + AO356_12905 0.73 +0.3
2,939,715 - AO356_12905 0.73 +1.0
2,939,873 + +0.6
2,939,873 + +0.5
2,939,874 - -0.8
2,939,874 - -0.9
2,939,874 - -0.1
2,939,874 - +0.2
2,939,876 + +0.9
2,939,876 + +0.9
2,939,876 + -1.2
2,939,876 + +0.9
2,939,876 + -0.7
2,939,876 + +0.1
2,939,876 + +0.4
2,939,876 + +0.1
2,939,876 + +0.2
2,939,876 + +0.4
2,939,876 + +0.9
2,939,876 + +0.9
2,939,876 + -1.3
2,939,876 + -0.5
2,939,876 + -0.5
2,939,877 - +0.4
2,939,877 - +0.1
2,939,877 - -1.6
2,939,877 - -0.5
2,939,877 - -0.3
2,939,877 - +1.1
2,939,877 - -0.2
2,939,877 - +0.4
2,939,877 - -0.1
2,939,880 + -0.2
2,939,880 + +0.5
2,939,880 + +0.9
2,939,881 - +0.1
2,939,881 - -0.3
2,939,881 - +1.7
2,939,881 - +0.3
2,939,881 - +0.1
2,939,881 - +0.9
2,939,881 - +0.4
2,939,892 + -1.2
2,939,898 + +0.3
2,939,898 + +0.7
2,939,898 + -0.6
2,939,898 + +0.5
2,939,898 + +0.6
2,939,898 + +0.5
2,939,898 + +0.2
2,939,898 + +0.4
2,939,898 + +0.7
2,939,898 + +0.3
2,939,898 + +0.0
2,939,899 - +0.5
2,939,899 - -1.7
2,939,899 - -0.7
2,939,967 + AO356_12910 0.11 +0.1

Or see this region's nucleotide sequence