Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01733 and ECD_01734 are separated by 116 nucleotides ECD_01734 and ECD_01735 are separated by 160 nucleotides ECD_01735 and ECD_01736 are separated by 166 nucleotides
ECD_01733: ECD_01733 - selenophosphate synthase, at 1,791,341 to 1,792,384
_01733
ECD_01734: ECD_01734 - putative oxidoreductase, at 1,792,501 to 1,793,052
_01734
ECD_01735: ECD_01735 - protease IV (signal peptide peptidase), at 1,793,213 to 1,795,069
_01735
ECD_01736: ECD_01736 - cytoplasmic L-asparaginase 1, at 1,795,236 to 1,796,252
_01736
Position (kb)
1793
1794
1795
1796 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1792.354 kb on - strand at 1792.509 kb on - strand at 1792.548 kb on + strand at 1793.036 kb on - strand at 1793.210 kb on + strand at 1794.035 kb on + strand, within ECD_01735 at 1794.565 kb on + strand, within ECD_01735 at 1794.667 kb on + strand, within ECD_01735 at 1794.769 kb on + strand, within ECD_01735 at 1795.197 kb on - strand at 1795.226 kb on + strand at 1795.305 kb on + strand at 1795.306 kb on - strand at 1795.308 kb on - strand at 1795.328 kb on - strand at 1795.397 kb on + strand, within ECD_01736 at 1795.521 kb on + strand, within ECD_01736 at 1795.793 kb on + strand, within ECD_01736 at 1796.054 kb on + strand, within ECD_01736
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,792,354 - +2.0 1,792,509 - -1.1 1,792,548 + +1.5 1,793,036 - -0.4 1,793,210 + -0.9 1,794,035 + ECD_01735 0.44 -0.6 1,794,565 + ECD_01735 0.73 -0.1 1,794,667 + ECD_01735 0.78 -2.1 1,794,769 + ECD_01735 0.84 -0.0 1,795,197 - +1.3 1,795,226 + -1.8 1,795,305 + +1.5 1,795,306 - -0.4 1,795,308 - -1.1 1,795,328 - -0.4 1,795,397 + ECD_01736 0.16 +0.6 1,795,521 + ECD_01736 0.28 +3.1 1,795,793 + ECD_01736 0.55 +0.7 1,796,054 + ECD_01736 0.80 -0.6
Or see this region's nucleotide sequence