Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01215 and ECD_01216 are separated by 476 nucleotides ECD_01216 and ECD_01217 are separated by 737 nucleotides
ECD_01215: ECD_01215 - fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase, at 1,282,237 to 1,284,912
_01215
ECD_01216: ECD_01216 - UPF0056 family inner membrane protein, at 1,285,389 to 1,286,036
_01216
ECD_01217: ECD_01217 - oligopeptide ABC transporter periplasmic binding protein, at 1,286,774 to 1,288,405
_01217
Position (kb)
1285
1286
1287 Strain fitness (log2 ratio)
-1
0
1
2 at 1284.553 kb on - strand, within ECD_01215 at 1284.553 kb on - strand, within ECD_01215 at 1284.684 kb on - strand at 1284.690 kb on - strand at 1285.557 kb on - strand, within ECD_01216 at 1285.607 kb on + strand, within ECD_01216 at 1285.694 kb on + strand, within ECD_01216 at 1285.829 kb on + strand, within ECD_01216 at 1285.991 kb on + strand at 1286.610 kb on + strand at 1286.610 kb on + strand at 1286.610 kb on + strand at 1286.658 kb on + strand at 1286.658 kb on + strand at 1286.658 kb on + strand at 1286.658 kb on + strand at 1286.658 kb on + strand at 1286.658 kb on + strand at 1286.750 kb on + strand at 1286.802 kb on + strand at 1286.859 kb on + strand at 1286.859 kb on + strand at 1286.962 kb on + strand, within ECD_01217 at 1286.962 kb on + strand, within ECD_01217 at 1286.965 kb on + strand, within ECD_01217
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,284,553 - ECD_01215 0.87 -0.9 1,284,553 - ECD_01215 0.87 +1.7 1,284,684 - +0.3 1,284,690 - +1.5 1,285,557 - ECD_01216 0.26 -0.6 1,285,607 + ECD_01216 0.34 -1.3 1,285,694 + ECD_01216 0.47 -1.5 1,285,829 + ECD_01216 0.68 +0.3 1,285,991 + +0.3 1,286,610 + +1.3 1,286,610 + -0.1 1,286,610 + -0.1 1,286,658 + +2.7 1,286,658 + -0.1 1,286,658 + +1.0 1,286,658 + +1.8 1,286,658 + -0.1 1,286,658 + +0.5 1,286,750 + -1.3 1,286,802 + +1.4 1,286,859 + -0.6 1,286,859 + -0.7 1,286,962 + ECD_01217 0.12 -1.6 1,286,962 + ECD_01217 0.12 -0.3 1,286,965 + ECD_01217 0.12 -1.5
Or see this region's nucleotide sequence