Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0323 and Psyr_0324 are separated by 788 nucleotides Psyr_0324 and Psyr_0325 are separated by 611 nucleotides
Psyr_0323: Psyr_0323 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase, at 340,076 to 341,305
_0323
Psyr_0324: Psyr_0324 - transcriptional regulator, AraC family, at 342,094 to 343,086
_0324
Psyr_0325: Psyr_0325 - General substrate transporter:TonB box, N-terminal, at 343,698 to 345,008
_0325
Position (kb) 342
343
344 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 341.304 kb on - strand at 341.304 kb on - strand at 341.304 kb on - strand at 341.317 kb on + strand at 341.317 kb on + strand at 341.317 kb on + strand at 341.317 kb on + strand at 341.317 kb on + strand at 341.317 kb on + strand at 341.318 kb on - strand at 341.318 kb on - strand at 341.318 kb on - strand at 341.318 kb on - strand at 341.318 kb on - strand at 341.318 kb on - strand at 341.318 kb on - strand at 341.321 kb on + strand at 341.322 kb on - strand at 341.359 kb on + strand at 341.395 kb on - strand at 341.395 kb on - strand at 341.398 kb on + strand at 341.398 kb on + strand at 341.398 kb on + strand at 341.398 kb on + strand at 341.398 kb on + strand at 341.398 kb on + strand at 341.399 kb on - strand at 341.399 kb on - strand at 341.399 kb on - strand at 341.404 kb on - strand at 341.404 kb on - strand at 341.404 kb on - strand at 341.404 kb on - strand at 341.404 kb on - strand at 341.404 kb on - strand at 341.411 kb on - strand at 341.439 kb on - strand at 341.640 kb on - strand at 341.664 kb on - strand at 341.664 kb on - strand at 341.664 kb on - strand at 341.664 kb on - strand at 341.717 kb on + strand at 341.717 kb on + strand at 341.717 kb on + strand at 341.717 kb on + strand at 341.744 kb on - strand at 342.191 kb on + strand at 342.191 kb on + strand at 342.275 kb on + strand, within Psyr_0324 at 342.275 kb on + strand, within Psyr_0324 at 342.276 kb on - strand, within Psyr_0324 at 342.394 kb on + strand, within Psyr_0324 at 342.643 kb on + strand, within Psyr_0324 at 342.643 kb on + strand, within Psyr_0324 at 342.643 kb on + strand, within Psyr_0324 at 342.643 kb on + strand, within Psyr_0324 at 342.643 kb on + strand, within Psyr_0324 at 342.643 kb on + strand, within Psyr_0324 at 342.643 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.647 kb on + strand, within Psyr_0324 at 342.648 kb on - strand, within Psyr_0324 at 342.648 kb on - strand, within Psyr_0324 at 342.648 kb on - strand, within Psyr_0324 at 342.648 kb on - strand, within Psyr_0324 at 342.648 kb on - strand, within Psyr_0324 at 342.648 kb on - strand, within Psyr_0324 at 342.722 kb on + strand, within Psyr_0324 at 342.784 kb on + strand, within Psyr_0324 at 342.784 kb on + strand, within Psyr_0324 at 342.784 kb on + strand, within Psyr_0324 at 342.784 kb on + strand, within Psyr_0324 at 342.785 kb on - strand, within Psyr_0324 at 342.785 kb on - strand, within Psyr_0324 at 342.785 kb on - strand, within Psyr_0324 at 342.831 kb on + strand, within Psyr_0324 at 342.831 kb on + strand, within Psyr_0324 at 342.831 kb on + strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.985 kb on + strand, within Psyr_0324 at 342.985 kb on + strand, within Psyr_0324 at 342.986 kb on - strand, within Psyr_0324 at 342.986 kb on - strand, within Psyr_0324 at 342.986 kb on - strand, within Psyr_0324 at 343.032 kb on + strand at 343.033 kb on - strand at 343.276 kb on + strand at 343.276 kb on + strand at 343.276 kb on + strand at 343.278 kb on + strand at 343.279 kb on - strand at 343.279 kb on - strand at 343.298 kb on - strand at 343.425 kb on + strand at 343.425 kb on + strand at 343.494 kb on + strand at 343.529 kb on + strand at 343.563 kb on + strand at 343.612 kb on + strand at 343.676 kb on + strand at 343.677 kb on - strand at 343.682 kb on + strand at 343.683 kb on - strand at 343.683 kb on - strand at 343.705 kb on + strand at 343.705 kb on + strand at 343.705 kb on + strand at 343.705 kb on + strand at 343.705 kb on + strand at 343.706 kb on - strand at 343.706 kb on - strand at 343.706 kb on - strand at 343.706 kb on - strand at 343.706 kb on - strand at 343.761 kb on + strand at 343.761 kb on + strand at 343.761 kb on + strand at 343.761 kb on + strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.834 kb on - strand, within Psyr_0325 at 343.893 kb on + strand, within Psyr_0325 at 343.893 kb on + strand, within Psyr_0325 at 343.893 kb on + strand, within Psyr_0325 at 343.894 kb on - strand, within Psyr_0325 at 343.894 kb on - strand, within Psyr_0325 at 343.894 kb on - strand, within Psyr_0325
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 341,304 - +0.1 341,304 - -1.1 341,304 - +0.1 341,317 + +0.7 341,317 + -1.7 341,317 + -0.9 341,317 + -1.1 341,317 + -0.0 341,317 + -0.3 341,318 - +0.9 341,318 - +1.6 341,318 - +1.3 341,318 - -0.9 341,318 - +0.2 341,318 - -1.6 341,318 - +0.9 341,321 + +1.9 341,322 - +0.0 341,359 + -0.6 341,395 - -3.3 341,395 - -0.5 341,398 + -1.3 341,398 + +0.6 341,398 + -0.5 341,398 + -0.4 341,398 + +2.3 341,398 + +0.7 341,399 - +0.2 341,399 - -0.5 341,399 - -1.8 341,404 - +1.0 341,404 - +0.2 341,404 - +1.0 341,404 - +0.3 341,404 - -0.7 341,404 - -0.3 341,411 - -1.5 341,439 - -0.1 341,640 - +0.3 341,664 - -0.9 341,664 - +1.4 341,664 - +0.9 341,664 - +0.3 341,717 + +1.7 341,717 + -0.5 341,717 + +0.9 341,717 + +1.2 341,744 - +1.0 342,191 + +0.6 342,191 + +0.2 342,275 + Psyr_0324 0.18 +1.2 342,275 + Psyr_0324 0.18 -0.7 342,276 - Psyr_0324 0.18 +2.0 342,394 + Psyr_0324 0.30 -1.0 342,643 + Psyr_0324 0.55 +1.0 342,643 + Psyr_0324 0.55 +0.1 342,643 + Psyr_0324 0.55 +0.1 342,643 + Psyr_0324 0.55 -0.8 342,643 + Psyr_0324 0.55 -0.2 342,643 + Psyr_0324 0.55 +0.1 342,643 + Psyr_0324 0.55 -1.4 342,647 + Psyr_0324 0.56 +0.0 342,647 + Psyr_0324 0.56 -3.1 342,647 + Psyr_0324 0.56 +2.4 342,647 + Psyr_0324 0.56 -0.5 342,647 + Psyr_0324 0.56 -0.6 342,647 + Psyr_0324 0.56 -0.4 342,647 + Psyr_0324 0.56 -1.2 342,647 + Psyr_0324 0.56 +0.8 342,647 + Psyr_0324 0.56 -1.0 342,648 - Psyr_0324 0.56 -0.1 342,648 - Psyr_0324 0.56 -1.1 342,648 - Psyr_0324 0.56 +0.9 342,648 - Psyr_0324 0.56 -0.1 342,648 - Psyr_0324 0.56 +0.4 342,648 - Psyr_0324 0.56 -0.6 342,722 + Psyr_0324 0.63 -0.6 342,784 + Psyr_0324 0.69 -0.4 342,784 + Psyr_0324 0.69 -1.2 342,784 + Psyr_0324 0.69 -0.9 342,784 + Psyr_0324 0.69 -2.3 342,785 - Psyr_0324 0.70 +1.4 342,785 - Psyr_0324 0.70 -0.4 342,785 - Psyr_0324 0.70 +0.7 342,831 + Psyr_0324 0.74 -2.0 342,831 + Psyr_0324 0.74 -2.2 342,831 + Psyr_0324 0.74 -0.5 342,832 - Psyr_0324 0.74 -0.9 342,832 - Psyr_0324 0.74 +1.0 342,832 - Psyr_0324 0.74 -1.1 342,832 - Psyr_0324 0.74 -1.1 342,832 - Psyr_0324 0.74 +0.8 342,985 + Psyr_0324 0.90 -0.3 342,985 + Psyr_0324 0.90 -1.3 342,986 - Psyr_0324 0.90 +0.2 342,986 - Psyr_0324 0.90 -1.2 342,986 - Psyr_0324 0.90 +0.5 343,032 + +0.7 343,033 - -0.4 343,276 + +0.1 343,276 + -0.0 343,276 + -0.1 343,278 + -0.7 343,279 - +1.2 343,279 - -1.4 343,298 - +1.8 343,425 + +1.2 343,425 + +0.4 343,494 + -0.5 343,529 + -2.0 343,563 + -0.2 343,612 + -0.9 343,676 + -0.6 343,677 - -0.8 343,682 + -0.8 343,683 - +1.1 343,683 - +1.4 343,705 + -0.3 343,705 + -1.0 343,705 + +1.7 343,705 + +1.2 343,705 + -1.3 343,706 - -0.2 343,706 - +1.0 343,706 - -1.3 343,706 - +0.1 343,706 - -0.9 343,761 + +2.3 343,761 + +0.7 343,761 + -2.7 343,761 + -1.0 343,762 - -0.4 343,762 - -0.2 343,762 - -0.3 343,762 - -1.0 343,762 - +1.7 343,762 - +0.6 343,834 - Psyr_0325 0.10 +1.3 343,893 + Psyr_0325 0.15 -0.1 343,893 + Psyr_0325 0.15 -0.5 343,893 + Psyr_0325 0.15 +0.7 343,894 - Psyr_0325 0.15 -0.4 343,894 - Psyr_0325 0.15 +1.1 343,894 - Psyr_0325 0.15 +0.0
Or see this region's nucleotide sequence