Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1015

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1013 and PfGW456L13_1014 are separated by 293 nucleotidesPfGW456L13_1014 and PfGW456L13_1015 are separated by 115 nucleotidesPfGW456L13_1015 and PfGW456L13_1016 overlap by 4 nucleotides PfGW456L13_1013 - NLP/P60 family protein, at 1,124,649 to 1,125,227 _1013 PfGW456L13_1014 - FIG00955003: hypothetical protein, at 1,125,521 to 1,125,949 _1014 PfGW456L13_1015 - Dihydroorotase (EC 3.5.2.3), at 1,126,065 to 1,127,336 _1015 PfGW456L13_1016 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 1,127,333 to 1,128,352 _1016 Position (kb) 1126 1127 1128Strain fitness (log2 ratio) -2 -1 0 1 2at 1125.112 kb on + strand, within PfGW456L13_1013at 1125.112 kb on + strand, within PfGW456L13_1013at 1125.112 kb on + strand, within PfGW456L13_1013at 1125.112 kb on + strand, within PfGW456L13_1013at 1125.112 kb on + strand, within PfGW456L13_1013at 1125.112 kb on + strand, within PfGW456L13_1013at 1125.112 kb on + strand, within PfGW456L13_1013at 1125.112 kb on + strand, within PfGW456L13_1013at 1125.112 kb on + strand, within PfGW456L13_1013at 1125.112 kb on + strand, within PfGW456L13_1013at 1125.113 kb on - strand, within PfGW456L13_1013at 1125.113 kb on - strand, within PfGW456L13_1013at 1125.113 kb on - strand, within PfGW456L13_1013at 1125.113 kb on - strand, within PfGW456L13_1013at 1125.113 kb on - strand, within PfGW456L13_1013at 1125.113 kb on - strand, within PfGW456L13_1013at 1125.113 kb on - strand, within PfGW456L13_1013at 1125.113 kb on - strand, within PfGW456L13_1013at 1125.113 kb on - strand, within PfGW456L13_1013at 1125.113 kb on - strand, within PfGW456L13_1013at 1125.113 kb on - strand, within PfGW456L13_1013at 1125.113 kb on - strand, within PfGW456L13_1013at 1125.117 kb on - strand, within PfGW456L13_1013at 1125.117 kb on - strand, within PfGW456L13_1013at 1125.169 kb on + strand, within PfGW456L13_1013at 1125.169 kb on + strand, within PfGW456L13_1013at 1125.270 kb on + strandat 1125.270 kb on + strandat 1125.270 kb on + strandat 1125.271 kb on - strandat 1125.271 kb on - strandat 1125.283 kb on + strandat 1125.283 kb on + strandat 1125.284 kb on - strandat 1125.284 kb on - strandat 1125.284 kb on - strandat 1125.284 kb on - strandat 1125.284 kb on - strandat 1125.284 kb on - strandat 1125.286 kb on + strandat 1125.286 kb on + strandat 1125.286 kb on + strandat 1125.304 kb on + strandat 1125.304 kb on + strandat 1125.305 kb on - strandat 1125.306 kb on + strandat 1125.412 kb on + strandat 1125.412 kb on + strandat 1125.412 kb on + strandat 1125.413 kb on - strandat 1125.413 kb on - strandat 1125.437 kb on + strandat 1125.437 kb on + strandat 1125.438 kb on - strandat 1125.438 kb on - strandat 1125.438 kb on - strandat 1125.438 kb on - strandat 1125.438 kb on - strandat 1125.483 kb on + strandat 1125.490 kb on + strandat 1125.490 kb on + strandat 1125.491 kb on - strandat 1125.491 kb on - strandat 1125.491 kb on - strandat 1125.494 kb on + strandat 1125.494 kb on + strandat 1125.495 kb on - strandat 1125.495 kb on - strandat 1125.495 kb on - strandat 1125.495 kb on - strandat 1125.495 kb on - strandat 1125.498 kb on + strandat 1125.499 kb on - strandat 1125.578 kb on + strand, within PfGW456L13_1014at 1125.620 kb on + strand, within PfGW456L13_1014at 1125.620 kb on + strand, within PfGW456L13_1014at 1125.620 kb on + strand, within PfGW456L13_1014at 1125.620 kb on + strand, within PfGW456L13_1014at 1125.620 kb on + strand, within PfGW456L13_1014at 1125.621 kb on - strand, within PfGW456L13_1014at 1125.621 kb on - strand, within PfGW456L13_1014at 1125.621 kb on - strand, within PfGW456L13_1014at 1125.621 kb on - strand, within PfGW456L13_1014at 1125.624 kb on - strand, within PfGW456L13_1014at 1125.624 kb on - strand, within PfGW456L13_1014at 1125.758 kb on + strand, within PfGW456L13_1014at 1125.758 kb on + strand, within PfGW456L13_1014at 1125.758 kb on + strand, within PfGW456L13_1014at 1125.759 kb on - strand, within PfGW456L13_1014at 1125.759 kb on - strand, within PfGW456L13_1014at 1125.815 kb on + strand, within PfGW456L13_1014at 1125.815 kb on + strand, within PfGW456L13_1014at 1125.816 kb on - strand, within PfGW456L13_1014at 1125.816 kb on - strand, within PfGW456L13_1014at 1125.816 kb on - strand, within PfGW456L13_1014at 1125.816 kb on - strand, within PfGW456L13_1014at 1125.845 kb on + strand, within PfGW456L13_1014at 1125.845 kb on + strand, within PfGW456L13_1014at 1125.846 kb on - strand, within PfGW456L13_1014at 1125.846 kb on - strand, within PfGW456L13_1014at 1125.846 kb on - strand, within PfGW456L13_1014at 1125.884 kb on + strand, within PfGW456L13_1014at 1125.884 kb on + strand, within PfGW456L13_1014at 1125.884 kb on + strand, within PfGW456L13_1014at 1125.885 kb on - strand, within PfGW456L13_1014at 1125.922 kb on + strandat 1125.922 kb on + strandat 1125.947 kb on + strandat 1125.947 kb on + strandat 1125.947 kb on + strandat 1126.002 kb on + strandat 1126.002 kb on + strandat 1126.002 kb on + strandat 1126.002 kb on + strandat 1126.002 kb on + strandat 1126.002 kb on + strandat 1126.003 kb on - strandat 1126.066 kb on + strandat 1126.066 kb on + strandat 1126.066 kb on + strandat 1126.066 kb on + strandat 1126.066 kb on + strandat 1126.067 kb on - strandat 1126.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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1,125,112 + PfGW456L13_1013 0.80 +0.4
1,125,112 + PfGW456L13_1013 0.80 +0.4
1,125,112 + PfGW456L13_1013 0.80 -0.2
1,125,112 + PfGW456L13_1013 0.80 +0.7
1,125,112 + PfGW456L13_1013 0.80 +1.0
1,125,112 + PfGW456L13_1013 0.80 -0.8
1,125,112 + PfGW456L13_1013 0.80 -2.2
1,125,112 + PfGW456L13_1013 0.80 -0.1
1,125,112 + PfGW456L13_1013 0.80 +1.0
1,125,112 + PfGW456L13_1013 0.80 -0.6
1,125,113 - PfGW456L13_1013 0.80 -0.5
1,125,113 - PfGW456L13_1013 0.80 -1.3
1,125,113 - PfGW456L13_1013 0.80 -0.5
1,125,113 - PfGW456L13_1013 0.80 +0.1
1,125,113 - PfGW456L13_1013 0.80 +0.4
1,125,113 - PfGW456L13_1013 0.80 +0.3
1,125,113 - PfGW456L13_1013 0.80 +0.5
1,125,113 - PfGW456L13_1013 0.80 +0.9
1,125,113 - PfGW456L13_1013 0.80 -0.2
1,125,113 - PfGW456L13_1013 0.80 -1.4
1,125,113 - PfGW456L13_1013 0.80 +0.1
1,125,113 - PfGW456L13_1013 0.80 -0.2
1,125,117 - PfGW456L13_1013 0.81 +1.2
1,125,117 - PfGW456L13_1013 0.81 +0.9
1,125,169 + PfGW456L13_1013 0.90 +1.4
1,125,169 + PfGW456L13_1013 0.90 -0.5
1,125,270 + -1.7
1,125,270 + +0.6
1,125,270 + +0.2
1,125,271 - +1.1
1,125,271 - +0.4
1,125,283 + -1.3
1,125,283 + -0.1
1,125,284 - +0.2
1,125,284 - -2.0
1,125,284 - +0.7
1,125,284 - -0.6
1,125,284 - +1.2
1,125,284 - +0.2
1,125,286 + +0.9
1,125,286 + -1.3
1,125,286 + -0.2
1,125,304 + +0.9
1,125,304 + +0.0
1,125,305 - -0.4
1,125,306 + +0.8
1,125,412 + -1.7
1,125,412 + +0.7
1,125,412 + -0.3
1,125,413 - -2.7
1,125,413 - -1.4
1,125,437 + -0.7
1,125,437 + -0.5
1,125,438 - -0.6
1,125,438 - -0.3
1,125,438 - -0.1
1,125,438 - +1.8
1,125,438 - +1.0
1,125,483 + +0.2
1,125,490 + -2.1
1,125,490 + +0.4
1,125,491 - +0.0
1,125,491 - -0.4
1,125,491 - -0.8
1,125,494 + -1.1
1,125,494 + +1.4
1,125,495 - -0.6
1,125,495 - +0.2
1,125,495 - -1.2
1,125,495 - +1.2
1,125,495 - -0.5
1,125,498 + -1.0
1,125,499 - -0.1
1,125,578 + PfGW456L13_1014 0.13 +1.2
1,125,620 + PfGW456L13_1014 0.23 -0.3
1,125,620 + PfGW456L13_1014 0.23 -0.8
1,125,620 + PfGW456L13_1014 0.23 -1.5
1,125,620 + PfGW456L13_1014 0.23 -1.6
1,125,620 + PfGW456L13_1014 0.23 -0.2
1,125,621 - PfGW456L13_1014 0.23 +0.5
1,125,621 - PfGW456L13_1014 0.23 +0.2
1,125,621 - PfGW456L13_1014 0.23 -0.8
1,125,621 - PfGW456L13_1014 0.23 -0.9
1,125,624 - PfGW456L13_1014 0.24 +1.8
1,125,624 - PfGW456L13_1014 0.24 -0.2
1,125,758 + PfGW456L13_1014 0.55 +1.2
1,125,758 + PfGW456L13_1014 0.55 +0.1
1,125,758 + PfGW456L13_1014 0.55 +1.1
1,125,759 - PfGW456L13_1014 0.55 -0.9
1,125,759 - PfGW456L13_1014 0.55 +1.6
1,125,815 + PfGW456L13_1014 0.69 +0.3
1,125,815 + PfGW456L13_1014 0.69 -1.6
1,125,816 - PfGW456L13_1014 0.69 -0.1
1,125,816 - PfGW456L13_1014 0.69 +0.0
1,125,816 - PfGW456L13_1014 0.69 -0.7
1,125,816 - PfGW456L13_1014 0.69 +0.4
1,125,845 + PfGW456L13_1014 0.76 -0.2
1,125,845 + PfGW456L13_1014 0.76 -0.3
1,125,846 - PfGW456L13_1014 0.76 -0.9
1,125,846 - PfGW456L13_1014 0.76 +2.4
1,125,846 - PfGW456L13_1014 0.76 -1.4
1,125,884 + PfGW456L13_1014 0.85 -1.0
1,125,884 + PfGW456L13_1014 0.85 -0.9
1,125,884 + PfGW456L13_1014 0.85 -1.4
1,125,885 - PfGW456L13_1014 0.85 -0.6
1,125,922 + -1.1
1,125,922 + -2.0
1,125,947 + -0.3
1,125,947 + -0.3
1,125,947 + +0.1
1,126,002 + -0.4
1,126,002 + -1.2
1,126,002 + -0.5
1,126,002 + +0.3
1,126,002 + +0.8
1,126,002 + +1.4
1,126,003 - -0.1
1,126,066 + -0.2
1,126,066 + -0.2
1,126,066 + -0.1
1,126,066 + -0.0
1,126,066 + -2.2
1,126,067 - +2.1
1,126,067 - -0.4

Or see this region's nucleotide sequence