Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06820

Experiment: Lomefloxacin 0.012 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS06815 and HSERO_RS06820 are separated by 43 nucleotidesHSERO_RS06820 and HSERO_RS06825 overlap by 1 nucleotides HSERO_RS06815: HSERO_RS06815 - multidrug transporter, at 1,546,655 to 1,549,804 _RS06815 HSERO_RS06820: HSERO_RS06820 - multidrug transporter, at 1,549,848 to 1,551,302 _RS06820 HSERO_RS06825: HSERO_RS06825 - transcriptional regulator, at 1,551,302 to 1,551,916 _RS06825 Position (kb) 1549 1550 1551 1552Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1548.867 kb on + strand, within HSERO_RS06815at 1548.929 kb on - strand, within HSERO_RS06815at 1548.980 kb on - strand, within HSERO_RS06815at 1549.004 kb on - strand, within HSERO_RS06815at 1549.102 kb on + strand, within HSERO_RS06815at 1549.218 kb on - strand, within HSERO_RS06815at 1549.284 kb on - strand, within HSERO_RS06815at 1549.457 kb on + strand, within HSERO_RS06815at 1549.571 kb on + strandat 1549.590 kb on + strandat 1549.616 kb on + strandat 1549.831 kb on + strandat 1549.882 kb on + strandat 1550.026 kb on + strand, within HSERO_RS06820at 1550.062 kb on + strand, within HSERO_RS06820at 1550.062 kb on + strand, within HSERO_RS06820at 1550.062 kb on + strand, within HSERO_RS06820at 1550.065 kb on - strand, within HSERO_RS06820at 1550.173 kb on + strand, within HSERO_RS06820at 1550.181 kb on - strand, within HSERO_RS06820at 1550.208 kb on + strand, within HSERO_RS06820at 1550.216 kb on - strand, within HSERO_RS06820at 1550.216 kb on - strand, within HSERO_RS06820at 1550.230 kb on + strand, within HSERO_RS06820at 1550.292 kb on - strand, within HSERO_RS06820at 1550.423 kb on - strand, within HSERO_RS06820at 1550.516 kb on - strand, within HSERO_RS06820at 1550.541 kb on - strand, within HSERO_RS06820at 1550.546 kb on + strand, within HSERO_RS06820at 1550.554 kb on - strand, within HSERO_RS06820at 1550.554 kb on - strand, within HSERO_RS06820at 1550.638 kb on - strand, within HSERO_RS06820at 1550.688 kb on - strand, within HSERO_RS06820at 1550.732 kb on - strand, within HSERO_RS06820at 1550.794 kb on + strandat 1551.030 kb on + strand, within HSERO_RS06820at 1551.050 kb on + strand, within HSERO_RS06820at 1551.165 kb on - strandat 1551.322 kb on - strandat 1551.329 kb on + strandat 1551.425 kb on + strand, within HSERO_RS06825at 1551.428 kb on + strand, within HSERO_RS06825at 1551.568 kb on - strand, within HSERO_RS06825at 1551.568 kb on - strand, within HSERO_RS06825at 1551.578 kb on + strand, within HSERO_RS06825at 1551.838 kb on - strand, within HSERO_RS06825at 1551.924 kb on + strandat 1552.252 kb on + strandat 1552.252 kb on + strandat 1552.276 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM
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1,548,867 + HSERO_RS06815 0.70 +0.2
1,548,929 - HSERO_RS06815 0.72 +0.6
1,548,980 - HSERO_RS06815 0.74 +0.2
1,549,004 - HSERO_RS06815 0.75 +0.4
1,549,102 + HSERO_RS06815 0.78 -1.7
1,549,218 - HSERO_RS06815 0.81 +0.5
1,549,284 - HSERO_RS06815 0.83 +0.2
1,549,457 + HSERO_RS06815 0.89 -0.0
1,549,571 + -0.3
1,549,590 + -0.3
1,549,616 + -0.6
1,549,831 + -0.4
1,549,882 + -2.1
1,550,026 + HSERO_RS06820 0.12 -1.2
1,550,062 + HSERO_RS06820 0.15 +0.0
1,550,062 + HSERO_RS06820 0.15 +0.1
1,550,062 + HSERO_RS06820 0.15 -0.1
1,550,065 - HSERO_RS06820 0.15 +0.5
1,550,173 + HSERO_RS06820 0.22 -1.5
1,550,181 - HSERO_RS06820 0.23 +0.2
1,550,208 + HSERO_RS06820 0.25 +0.2
1,550,216 - HSERO_RS06820 0.25 -0.5
1,550,216 - HSERO_RS06820 0.25 +0.6
1,550,230 + HSERO_RS06820 0.26 -0.1
1,550,292 - HSERO_RS06820 0.31 +1.1
1,550,423 - HSERO_RS06820 0.40 -2.7
1,550,516 - HSERO_RS06820 0.46 -2.4
1,550,541 - HSERO_RS06820 0.48 +0.1
1,550,546 + HSERO_RS06820 0.48 +1.0
1,550,554 - HSERO_RS06820 0.49 -2.0
1,550,554 - HSERO_RS06820 0.49 -1.2
1,550,638 - HSERO_RS06820 0.54 +4.0
1,550,688 - HSERO_RS06820 0.58 +0.7
1,550,732 - HSERO_RS06820 0.61 +0.4
1,550,794 + +1.4
1,551,030 + HSERO_RS06820 0.81 -0.6
1,551,050 + HSERO_RS06820 0.83 -3.3
1,551,165 - +1.1
1,551,322 - -2.1
1,551,329 + -0.1
1,551,425 + HSERO_RS06825 0.20 -0.3
1,551,428 + HSERO_RS06825 0.20 +0.1
1,551,568 - HSERO_RS06825 0.43 -1.7
1,551,568 - HSERO_RS06825 0.43 -3.8
1,551,578 + HSERO_RS06825 0.45 -2.0
1,551,838 - HSERO_RS06825 0.87 +0.0
1,551,924 + +0.3
1,552,252 + -2.0
1,552,252 + +0.4
1,552,276 - -1.6

Or see this region's nucleotide sequence