Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02880

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02875 and MMJJ_RS02880 are separated by 42 nucleotidesMMJJ_RS02880 and MMJJ_RS02885 are separated by 178 nucleotidesMMJJ_RS02885 and MMJJ_RS02890 are separated by 9 nucleotides MMJJ_RS02875: MMJJ_RS02875 - site-2 protease family protein, at 541,995 to 543,008 _RS02875 MMJJ_RS02880: MMJJ_RS02880 - hypothetical protein, at 543,051 to 543,323 _RS02880 MMJJ_RS02885: MMJJ_RS02885 - NifB/NifX family molybdenum-iron cluster-binding protein, at 543,502 to 543,861 _RS02885 MMJJ_RS02890: MMJJ_RS02890 - ATP-binding protein, at 543,871 to 544,728 _RS02890 Position (kb) 543 544Strain fitness (log2 ratio) -1 0 1at 542.132 kb on + strand, within MMJJ_RS02875at 542.157 kb on - strand, within MMJJ_RS02875at 542.157 kb on - strand, within MMJJ_RS02875at 542.158 kb on + strand, within MMJJ_RS02875at 542.158 kb on + strand, within MMJJ_RS02875at 542.179 kb on - strand, within MMJJ_RS02875at 542.302 kb on - strand, within MMJJ_RS02875at 542.333 kb on - strand, within MMJJ_RS02875at 542.381 kb on + strand, within MMJJ_RS02875at 542.396 kb on - strand, within MMJJ_RS02875at 542.435 kb on + strand, within MMJJ_RS02875at 542.438 kb on - strand, within MMJJ_RS02875at 542.472 kb on - strand, within MMJJ_RS02875at 542.475 kb on + strand, within MMJJ_RS02875at 542.476 kb on - strand, within MMJJ_RS02875at 542.477 kb on + strand, within MMJJ_RS02875at 542.522 kb on + strand, within MMJJ_RS02875at 542.522 kb on + strand, within MMJJ_RS02875at 542.557 kb on - strand, within MMJJ_RS02875at 542.558 kb on + strand, within MMJJ_RS02875at 542.558 kb on + strand, within MMJJ_RS02875at 542.570 kb on + strand, within MMJJ_RS02875at 542.578 kb on - strand, within MMJJ_RS02875at 542.578 kb on - strand, within MMJJ_RS02875at 542.579 kb on + strand, within MMJJ_RS02875at 542.582 kb on - strand, within MMJJ_RS02875at 542.582 kb on - strand, within MMJJ_RS02875at 542.583 kb on + strand, within MMJJ_RS02875at 542.587 kb on + strand, within MMJJ_RS02875at 542.627 kb on - strand, within MMJJ_RS02875at 542.627 kb on - strand, within MMJJ_RS02875at 542.633 kb on + strand, within MMJJ_RS02875at 542.633 kb on + strand, within MMJJ_RS02875at 542.633 kb on + strand, within MMJJ_RS02875at 542.633 kb on + strand, within MMJJ_RS02875at 542.657 kb on - strand, within MMJJ_RS02875at 542.658 kb on + strand, within MMJJ_RS02875at 542.660 kb on - strand, within MMJJ_RS02875at 542.660 kb on - strand, within MMJJ_RS02875at 542.660 kb on - strand, within MMJJ_RS02875at 542.660 kb on - strand, within MMJJ_RS02875at 542.660 kb on - strand, within MMJJ_RS02875at 542.660 kb on - strand, within MMJJ_RS02875at 542.660 kb on - strand, within MMJJ_RS02875at 542.661 kb on + strand, within MMJJ_RS02875at 542.661 kb on + strand, within MMJJ_RS02875at 542.667 kb on + strand, within MMJJ_RS02875at 542.667 kb on + strand, within MMJJ_RS02875at 542.673 kb on + strand, within MMJJ_RS02875at 542.680 kb on + strand, within MMJJ_RS02875at 542.684 kb on + strand, within MMJJ_RS02875at 542.711 kb on + strand, within MMJJ_RS02875at 542.768 kb on - strand, within MMJJ_RS02875at 542.783 kb on - strand, within MMJJ_RS02875at 542.797 kb on - strand, within MMJJ_RS02875at 542.804 kb on - strand, within MMJJ_RS02875at 542.805 kb on + strand, within MMJJ_RS02875at 542.805 kb on + strand, within MMJJ_RS02875at 542.823 kb on + strand, within MMJJ_RS02875at 542.836 kb on - strand, within MMJJ_RS02875at 542.876 kb on + strand, within MMJJ_RS02875at 542.885 kb on + strand, within MMJJ_RS02875at 542.904 kb on + strand, within MMJJ_RS02875at 542.921 kb on + strandat 542.948 kb on + strandat 542.963 kb on - strandat 542.963 kb on - strandat 542.968 kb on - strandat 542.968 kb on - strandat 542.968 kb on - strandat 542.992 kb on - strandat 543.025 kb on + strandat 543.029 kb on - strandat 543.029 kb on - strandat 543.030 kb on + strandat 543.091 kb on - strand, within MMJJ_RS02880at 543.091 kb on - strand, within MMJJ_RS02880at 543.096 kb on + strand, within MMJJ_RS02880at 543.116 kb on - strand, within MMJJ_RS02880at 543.116 kb on - strand, within MMJJ_RS02880at 543.121 kb on - strand, within MMJJ_RS02880at 543.121 kb on - strand, within MMJJ_RS02880at 543.124 kb on - strand, within MMJJ_RS02880at 543.132 kb on - strand, within MMJJ_RS02880at 543.132 kb on - strand, within MMJJ_RS02880at 543.161 kb on - strand, within MMJJ_RS02880at 543.161 kb on - strand, within MMJJ_RS02880at 543.162 kb on + strand, within MMJJ_RS02880at 543.162 kb on + strand, within MMJJ_RS02880at 543.169 kb on - strand, within MMJJ_RS02880at 543.170 kb on + strand, within MMJJ_RS02880at 543.172 kb on - strand, within MMJJ_RS02880at 543.197 kb on + strand, within MMJJ_RS02880at 543.199 kb on - strand, within MMJJ_RS02880at 543.212 kb on + strand, within MMJJ_RS02880at 543.212 kb on + strand, within MMJJ_RS02880at 543.242 kb on - strand, within MMJJ_RS02880at 543.242 kb on - strand, within MMJJ_RS02880at 543.250 kb on + strand, within MMJJ_RS02880at 543.256 kb on - strand, within MMJJ_RS02880at 543.256 kb on - strand, within MMJJ_RS02880at 543.259 kb on - strand, within MMJJ_RS02880at 543.259 kb on - strand, within MMJJ_RS02880at 543.260 kb on + strand, within MMJJ_RS02880at 543.266 kb on + strand, within MMJJ_RS02880at 543.266 kb on + strand, within MMJJ_RS02880at 543.299 kb on - strandat 543.305 kb on + strandat 543.311 kb on + strandat 543.311 kb on + strandat 543.325 kb on - strandat 543.363 kb on - strandat 543.366 kb on + strandat 543.373 kb on - strandat 543.403 kb on + strandat 543.409 kb on + strandat 543.449 kb on + strandat 543.462 kb on - strandat 543.462 kb on - strandat 543.531 kb on - strandat 543.532 kb on + strandat 543.582 kb on + strand, within MMJJ_RS02885at 543.625 kb on + strand, within MMJJ_RS02885at 543.655 kb on + strand, within MMJJ_RS02885at 543.695 kb on - strand, within MMJJ_RS02885at 543.695 kb on - strand, within MMJJ_RS02885at 543.696 kb on + strand, within MMJJ_RS02885at 543.750 kb on - strand, within MMJJ_RS02885at 543.753 kb on - strand, within MMJJ_RS02885at 543.760 kb on - strand, within MMJJ_RS02885at 543.855 kb on - strandat 543.855 kb on - strandat 543.855 kb on - strandat 543.856 kb on + strandat 543.856 kb on + strandat 543.856 kb on + strandat 543.920 kb on - strandat 544.077 kb on + strand, within MMJJ_RS02890at 544.080 kb on - strand, within MMJJ_RS02890at 544.101 kb on - strand, within MMJJ_RS02890at 544.106 kb on - strand, within MMJJ_RS02890at 544.107 kb on + strand, within MMJJ_RS02890at 544.107 kb on + strand, within MMJJ_RS02890at 544.111 kb on + strand, within MMJJ_RS02890at 544.111 kb on + strand, within MMJJ_RS02890at 544.122 kb on - strand, within MMJJ_RS02890at 544.241 kb on - strand, within MMJJ_RS02890at 544.300 kb on + strand, within MMJJ_RS02890at 544.300 kb on + strand, within MMJJ_RS02890

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
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542,132 + MMJJ_RS02875 0.14 +0.6
542,157 - MMJJ_RS02875 0.16 -0.2
542,157 - MMJJ_RS02875 0.16 -0.3
542,158 + MMJJ_RS02875 0.16 +0.1
542,158 + MMJJ_RS02875 0.16 +0.2
542,179 - MMJJ_RS02875 0.18 +0.2
542,302 - MMJJ_RS02875 0.30 -0.2
542,333 - MMJJ_RS02875 0.33 -0.7
542,381 + MMJJ_RS02875 0.38 +0.6
542,396 - MMJJ_RS02875 0.40 -0.4
542,435 + MMJJ_RS02875 0.43 -0.1
542,438 - MMJJ_RS02875 0.44 -0.7
542,472 - MMJJ_RS02875 0.47 +0.3
542,475 + MMJJ_RS02875 0.47 +0.3
542,476 - MMJJ_RS02875 0.47 +0.4
542,477 + MMJJ_RS02875 0.48 -1.0
542,522 + MMJJ_RS02875 0.52 +0.1
542,522 + MMJJ_RS02875 0.52 +0.4
542,557 - MMJJ_RS02875 0.55 -0.5
542,558 + MMJJ_RS02875 0.56 +0.1
542,558 + MMJJ_RS02875 0.56 -0.3
542,570 + MMJJ_RS02875 0.57 -0.0
542,578 - MMJJ_RS02875 0.57 -0.7
542,578 - MMJJ_RS02875 0.57 +0.4
542,579 + MMJJ_RS02875 0.58 -0.0
542,582 - MMJJ_RS02875 0.58 +0.3
542,582 - MMJJ_RS02875 0.58 +0.0
542,583 + MMJJ_RS02875 0.58 -0.9
542,587 + MMJJ_RS02875 0.58 -0.5
542,627 - MMJJ_RS02875 0.62 +0.2
542,627 - MMJJ_RS02875 0.62 +0.0
542,633 + MMJJ_RS02875 0.63 -0.6
542,633 + MMJJ_RS02875 0.63 +0.4
542,633 + MMJJ_RS02875 0.63 +1.0
542,633 + MMJJ_RS02875 0.63 -0.7
542,657 - MMJJ_RS02875 0.65 +0.5
542,658 + MMJJ_RS02875 0.65 +0.2
542,660 - MMJJ_RS02875 0.66 +0.1
542,660 - MMJJ_RS02875 0.66 +0.2
542,660 - MMJJ_RS02875 0.66 -0.2
542,660 - MMJJ_RS02875 0.66 -1.2
542,660 - MMJJ_RS02875 0.66 +0.1
542,660 - MMJJ_RS02875 0.66 -0.0
542,660 - MMJJ_RS02875 0.66 -1.5
542,661 + MMJJ_RS02875 0.66 +1.3
542,661 + MMJJ_RS02875 0.66 +0.0
542,667 + MMJJ_RS02875 0.66 -0.5
542,667 + MMJJ_RS02875 0.66 -0.8
542,673 + MMJJ_RS02875 0.67 -0.3
542,680 + MMJJ_RS02875 0.68 +0.3
542,684 + MMJJ_RS02875 0.68 -0.2
542,711 + MMJJ_RS02875 0.71 +0.2
542,768 - MMJJ_RS02875 0.76 -0.4
542,783 - MMJJ_RS02875 0.78 +0.7
542,797 - MMJJ_RS02875 0.79 -0.6
542,804 - MMJJ_RS02875 0.80 -0.0
542,805 + MMJJ_RS02875 0.80 -0.2
542,805 + MMJJ_RS02875 0.80 -0.0
542,823 + MMJJ_RS02875 0.82 -0.7
542,836 - MMJJ_RS02875 0.83 -0.3
542,876 + MMJJ_RS02875 0.87 -0.5
542,885 + MMJJ_RS02875 0.88 -0.6
542,904 + MMJJ_RS02875 0.90 +0.5
542,921 + +0.3
542,948 + -0.1
542,963 - +0.8
542,963 - +0.4
542,968 - +0.1
542,968 - +0.4
542,968 - -0.8
542,992 - +0.2
543,025 + +0.2
543,029 - +0.1
543,029 - -0.0
543,030 + +0.2
543,091 - MMJJ_RS02880 0.15 +0.3
543,091 - MMJJ_RS02880 0.15 -0.4
543,096 + MMJJ_RS02880 0.16 +0.2
543,116 - MMJJ_RS02880 0.24 +0.7
543,116 - MMJJ_RS02880 0.24 -0.5
543,121 - MMJJ_RS02880 0.26 +0.2
543,121 - MMJJ_RS02880 0.26 +0.9
543,124 - MMJJ_RS02880 0.27 -0.1
543,132 - MMJJ_RS02880 0.30 +0.4
543,132 - MMJJ_RS02880 0.30 +0.5
543,161 - MMJJ_RS02880 0.40 -0.3
543,161 - MMJJ_RS02880 0.40 -1.0
543,162 + MMJJ_RS02880 0.41 +0.2
543,162 + MMJJ_RS02880 0.41 -0.7
543,169 - MMJJ_RS02880 0.43 +0.4
543,170 + MMJJ_RS02880 0.44 -0.0
543,172 - MMJJ_RS02880 0.44 -0.1
543,197 + MMJJ_RS02880 0.53 +1.0
543,199 - MMJJ_RS02880 0.54 +0.2
543,212 + MMJJ_RS02880 0.59 -0.2
543,212 + MMJJ_RS02880 0.59 +1.1
543,242 - MMJJ_RS02880 0.70 +1.0
543,242 - MMJJ_RS02880 0.70 +0.4
543,250 + MMJJ_RS02880 0.73 +0.8
543,256 - MMJJ_RS02880 0.75 +0.7
543,256 - MMJJ_RS02880 0.75 -0.7
543,259 - MMJJ_RS02880 0.76 +0.6
543,259 - MMJJ_RS02880 0.76 -0.5
543,260 + MMJJ_RS02880 0.77 +0.7
543,266 + MMJJ_RS02880 0.79 +1.2
543,266 + MMJJ_RS02880 0.79 -0.4
543,299 - +0.6
543,305 + +0.2
543,311 + +0.0
543,311 + +0.0
543,325 - -0.5
543,363 - -0.6
543,366 + -0.4
543,373 - +0.9
543,403 + +0.5
543,409 + +0.3
543,449 + +0.5
543,462 - -0.5
543,462 - -0.4
543,531 - +0.0
543,532 + +0.0
543,582 + MMJJ_RS02885 0.22 +0.3
543,625 + MMJJ_RS02885 0.34 +0.1
543,655 + MMJJ_RS02885 0.42 +0.0
543,695 - MMJJ_RS02885 0.54 +1.1
543,695 - MMJJ_RS02885 0.54 +0.8
543,696 + MMJJ_RS02885 0.54 +0.5
543,750 - MMJJ_RS02885 0.69 -0.3
543,753 - MMJJ_RS02885 0.70 -1.0
543,760 - MMJJ_RS02885 0.72 -0.4
543,855 - -0.2
543,855 - +0.2
543,855 - +0.7
543,856 + -0.0
543,856 + +0.5
543,856 + -0.1
543,920 - -0.4
544,077 + MMJJ_RS02890 0.24 -0.5
544,080 - MMJJ_RS02890 0.24 -0.1
544,101 - MMJJ_RS02890 0.27 -0.6
544,106 - MMJJ_RS02890 0.27 -0.2
544,107 + MMJJ_RS02890 0.28 +1.2
544,107 + MMJJ_RS02890 0.28 +0.3
544,111 + MMJJ_RS02890 0.28 -0.2
544,111 + MMJJ_RS02890 0.28 +0.6
544,122 - MMJJ_RS02890 0.29 +0.2
544,241 - MMJJ_RS02890 0.43 -0.6
544,300 + MMJJ_RS02890 0.50 -1.1
544,300 + MMJJ_RS02890 0.50 +0.5

Or see this region's nucleotide sequence