Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03545

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03535 and AO356_03540 are separated by 12 nucleotidesAO356_03540 and AO356_03545 are separated by 202 nucleotidesAO356_03545 and AO356_03550 are separated by 185 nucleotides AO356_03535: AO356_03535 - BolA family transcriptional regulator, at 790,293 to 790,592 _03535 AO356_03540: AO356_03540 - hypothetical protein, at 790,605 to 791,123 _03540 AO356_03545: AO356_03545 - fumarate hydratase, at 791,326 to 792,720 _03545 AO356_03550: AO356_03550 - hypothetical protein, at 792,906 to 793,868 _03550 Position (kb) 791 792 793Strain fitness (log2 ratio) -3 -2 -1 0 1at 790.366 kb on + strand, within AO356_03535at 790.366 kb on + strand, within AO356_03535at 790.366 kb on + strand, within AO356_03535at 790.367 kb on - strand, within AO356_03535at 790.367 kb on - strand, within AO356_03535at 790.367 kb on - strand, within AO356_03535at 790.367 kb on - strand, within AO356_03535at 790.367 kb on - strand, within AO356_03535at 790.367 kb on - strand, within AO356_03535at 790.367 kb on - strand, within AO356_03535at 790.367 kb on - strand, within AO356_03535at 790.420 kb on + strand, within AO356_03535at 790.420 kb on + strand, within AO356_03535at 790.421 kb on - strand, within AO356_03535at 790.421 kb on - strand, within AO356_03535at 790.421 kb on - strand, within AO356_03535at 790.421 kb on - strand, within AO356_03535at 790.778 kb on - strand, within AO356_03540at 790.778 kb on - strand, within AO356_03540at 790.778 kb on - strand, within AO356_03540at 790.825 kb on + strand, within AO356_03540at 790.825 kb on + strand, within AO356_03540at 790.826 kb on - strand, within AO356_03540at 790.901 kb on - strand, within AO356_03540at 790.981 kb on + strand, within AO356_03540at 790.981 kb on + strand, within AO356_03540at 790.981 kb on + strand, within AO356_03540at 790.981 kb on + strand, within AO356_03540at 790.982 kb on - strand, within AO356_03540at 790.982 kb on - strand, within AO356_03540at 791.099 kb on + strandat 791.139 kb on + strandat 791.139 kb on + strandat 791.140 kb on - strandat 791.140 kb on - strandat 791.150 kb on + strandat 791.151 kb on - strandat 791.179 kb on + strandat 791.290 kb on + strandat 791.310 kb on + strandat 791.311 kb on - strandat 792.604 kb on + strandat 792.604 kb on + strandat 792.604 kb on + strandat 792.605 kb on - strandat 792.605 kb on - strandat 792.605 kb on - strandat 792.650 kb on - strandat 792.693 kb on + strandat 792.693 kb on + strandat 792.694 kb on - strandat 792.694 kb on - strandat 792.708 kb on + strandat 792.791 kb on + strandat 792.791 kb on + strandat 792.791 kb on + strandat 792.791 kb on + strandat 792.791 kb on + strandat 792.791 kb on + strandat 792.792 kb on - strandat 792.792 kb on - strandat 792.792 kb on - strandat 792.792 kb on - strandat 792.792 kb on - strandat 792.792 kb on - strandat 792.792 kb on - strandat 793.012 kb on + strand, within AO356_03550at 793.045 kb on + strand, within AO356_03550at 793.045 kb on + strand, within AO356_03550at 793.045 kb on + strand, within AO356_03550at 793.045 kb on + strand, within AO356_03550at 793.045 kb on + strand, within AO356_03550at 793.046 kb on - strand, within AO356_03550at 793.046 kb on - strand, within AO356_03550at 793.046 kb on - strand, within AO356_03550at 793.046 kb on - strand, within AO356_03550at 793.046 kb on - strand, within AO356_03550at 793.046 kb on - strand, within AO356_03550at 793.046 kb on - strand, within AO356_03550at 793.046 kb on - strand, within AO356_03550at 793.279 kb on + strand, within AO356_03550at 793.279 kb on + strand, within AO356_03550at 793.279 kb on + strand, within AO356_03550at 793.279 kb on + strand, within AO356_03550at 793.279 kb on + strand, within AO356_03550at 793.280 kb on - strand, within AO356_03550at 793.280 kb on - strand, within AO356_03550at 793.280 kb on - strand, within AO356_03550at 793.342 kb on + strand, within AO356_03550at 793.342 kb on + strand, within AO356_03550at 793.342 kb on + strand, within AO356_03550at 793.342 kb on + strand, within AO356_03550at 793.342 kb on + strand, within AO356_03550at 793.342 kb on + strand, within AO356_03550at 793.343 kb on - strand, within AO356_03550at 793.343 kb on - strand, within AO356_03550at 793.343 kb on - strand, within AO356_03550at 793.343 kb on - strand, within AO356_03550at 793.343 kb on - strand, within AO356_03550at 793.343 kb on - strand, within AO356_03550at 793.343 kb on - strand, within AO356_03550at 793.343 kb on - strand, within AO356_03550at 793.343 kb on - strand, within AO356_03550at 793.343 kb on - strand, within AO356_03550at 793.393 kb on + strand, within AO356_03550at 793.393 kb on + strand, within AO356_03550at 793.394 kb on - strand, within AO356_03550at 793.394 kb on - strand, within AO356_03550at 793.394 kb on - strand, within AO356_03550at 793.597 kb on + strand, within AO356_03550at 793.598 kb on - strand, within AO356_03550at 793.606 kb on + strand, within AO356_03550at 793.606 kb on + strand, within AO356_03550at 793.606 kb on + strand, within AO356_03550at 793.606 kb on + strand, within AO356_03550at 793.606 kb on + strand, within AO356_03550at 793.606 kb on + strand, within AO356_03550at 793.606 kb on + strand, within AO356_03550at 793.606 kb on + strand, within AO356_03550at 793.606 kb on + strand, within AO356_03550at 793.606 kb on + strand, within AO356_03550at 793.607 kb on - strand, within AO356_03550at 793.607 kb on - strand, within AO356_03550at 793.607 kb on - strand, within AO356_03550at 793.607 kb on - strand, within AO356_03550at 793.702 kb on + strand, within AO356_03550at 793.702 kb on + strand, within AO356_03550

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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790,366 + AO356_03535 0.24 -0.1
790,366 + AO356_03535 0.24 -0.2
790,366 + AO356_03535 0.24 +0.1
790,367 - AO356_03535 0.25 +0.7
790,367 - AO356_03535 0.25 -0.1
790,367 - AO356_03535 0.25 -0.1
790,367 - AO356_03535 0.25 -0.3
790,367 - AO356_03535 0.25 -0.4
790,367 - AO356_03535 0.25 -0.0
790,367 - AO356_03535 0.25 -1.6
790,367 - AO356_03535 0.25 -1.5
790,420 + AO356_03535 0.42 -0.2
790,420 + AO356_03535 0.42 -0.8
790,421 - AO356_03535 0.43 +0.8
790,421 - AO356_03535 0.43 -0.3
790,421 - AO356_03535 0.43 -0.2
790,421 - AO356_03535 0.43 -0.6
790,778 - AO356_03540 0.33 +0.7
790,778 - AO356_03540 0.33 +0.5
790,778 - AO356_03540 0.33 +0.2
790,825 + AO356_03540 0.42 -0.6
790,825 + AO356_03540 0.42 +0.4
790,826 - AO356_03540 0.43 +0.2
790,901 - AO356_03540 0.57 +0.4
790,981 + AO356_03540 0.72 -0.2
790,981 + AO356_03540 0.72 -0.6
790,981 + AO356_03540 0.72 +0.3
790,981 + AO356_03540 0.72 -0.2
790,982 - AO356_03540 0.73 +1.1
790,982 - AO356_03540 0.73 +0.6
791,099 + +0.0
791,139 + +0.3
791,139 + -0.7
791,140 - -0.4
791,140 - +0.8
791,150 + +0.8
791,151 - -0.5
791,179 + -0.3
791,290 + +0.3
791,310 + -1.6
791,311 - +0.6
792,604 + +0.9
792,604 + +1.6
792,604 + +0.7
792,605 - +0.2
792,605 - +0.4
792,605 - -0.0
792,650 - -0.7
792,693 + +0.1
792,693 + -0.8
792,694 - -0.1
792,694 - +0.4
792,708 + -0.6
792,791 + +1.2
792,791 + +0.4
792,791 + +0.7
792,791 + +0.4
792,791 + -3.5
792,791 + +0.1
792,792 - +0.1
792,792 - +0.7
792,792 - +0.5
792,792 - +0.6
792,792 - -0.5
792,792 - -0.4
792,792 - +0.3
793,012 + AO356_03550 0.11 +0.2
793,045 + AO356_03550 0.14 -0.2
793,045 + AO356_03550 0.14 +1.1
793,045 + AO356_03550 0.14 -0.5
793,045 + AO356_03550 0.14 +0.3
793,045 + AO356_03550 0.14 +0.8
793,046 - AO356_03550 0.15 -1.1
793,046 - AO356_03550 0.15 -0.3
793,046 - AO356_03550 0.15 +0.5
793,046 - AO356_03550 0.15 +1.3
793,046 - AO356_03550 0.15 -1.3
793,046 - AO356_03550 0.15 -0.5
793,046 - AO356_03550 0.15 +0.0
793,046 - AO356_03550 0.15 -0.3
793,279 + AO356_03550 0.39 +0.1
793,279 + AO356_03550 0.39 -0.0
793,279 + AO356_03550 0.39 +0.5
793,279 + AO356_03550 0.39 -0.6
793,279 + AO356_03550 0.39 +0.9
793,280 - AO356_03550 0.39 +0.7
793,280 - AO356_03550 0.39 +0.6
793,280 - AO356_03550 0.39 -0.2
793,342 + AO356_03550 0.45 -0.4
793,342 + AO356_03550 0.45 +0.9
793,342 + AO356_03550 0.45 +0.2
793,342 + AO356_03550 0.45 +0.5
793,342 + AO356_03550 0.45 -1.0
793,342 + AO356_03550 0.45 -0.3
793,343 - AO356_03550 0.45 +0.3
793,343 - AO356_03550 0.45 -1.8
793,343 - AO356_03550 0.45 +0.1
793,343 - AO356_03550 0.45 +0.2
793,343 - AO356_03550 0.45 -0.4
793,343 - AO356_03550 0.45 +0.4
793,343 - AO356_03550 0.45 -0.2
793,343 - AO356_03550 0.45 -0.3
793,343 - AO356_03550 0.45 -0.4
793,343 - AO356_03550 0.45 -1.2
793,393 + AO356_03550 0.51 +0.5
793,393 + AO356_03550 0.51 -0.6
793,394 - AO356_03550 0.51 -0.5
793,394 - AO356_03550 0.51 +0.9
793,394 - AO356_03550 0.51 +1.5
793,597 + AO356_03550 0.72 +0.6
793,598 - AO356_03550 0.72 +0.3
793,606 + AO356_03550 0.73 +0.4
793,606 + AO356_03550 0.73 +0.3
793,606 + AO356_03550 0.73 -0.1
793,606 + AO356_03550 0.73 +0.4
793,606 + AO356_03550 0.73 -0.3
793,606 + AO356_03550 0.73 -0.5
793,606 + AO356_03550 0.73 +0.6
793,606 + AO356_03550 0.73 +0.9
793,606 + AO356_03550 0.73 -0.1
793,606 + AO356_03550 0.73 +0.5
793,607 - AO356_03550 0.73 -0.1
793,607 - AO356_03550 0.73 -0.4
793,607 - AO356_03550 0.73 +0.0
793,607 - AO356_03550 0.73 +0.7
793,702 + AO356_03550 0.83 +0.9
793,702 + AO356_03550 0.83 -0.0

Or see this region's nucleotide sequence