Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_844

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_842 and PfGW456L13_843 are separated by 2 nucleotidesPfGW456L13_843 and PfGW456L13_844 are separated by 13 nucleotidesPfGW456L13_844 and PfGW456L13_845 are separated by 4 nucleotides PfGW456L13_842 - Tyrosine recombinase XerC, at 949,784 to 950,683 _842 PfGW456L13_843 - Protein of unknown function DUF484, at 950,686 to 951,411 _843 PfGW456L13_844 - Diaminopimelate epimerase (EC 5.1.1.7), at 951,425 to 952,255 _844 PfGW456L13_845 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 952,260 to 953,507 _845 Position (kb) 951 952 953Strain fitness (log2 ratio) -3 -2 -1 0 1at 950.436 kb on + strand, within PfGW456L13_842at 950.442 kb on + strand, within PfGW456L13_842at 950.442 kb on + strand, within PfGW456L13_842at 950.443 kb on - strand, within PfGW456L13_842at 950.443 kb on - strand, within PfGW456L13_842at 950.465 kb on + strand, within PfGW456L13_842at 950.661 kb on + strandat 950.662 kb on - strandat 950.692 kb on + strandat 950.750 kb on + strandat 950.750 kb on + strandat 950.750 kb on + strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.784 kb on - strand, within PfGW456L13_843at 950.784 kb on - strand, within PfGW456L13_843at 951.270 kb on + strand, within PfGW456L13_843at 951.338 kb on - strand, within PfGW456L13_843at 951.338 kb on - strand, within PfGW456L13_843at 951.447 kb on + strandat 951.447 kb on + strandat 951.447 kb on + strandat 951.447 kb on + strandat 951.448 kb on - strandat 951.448 kb on - strandat 951.448 kb on - strandat 951.448 kb on - strandat 951.449 kb on + strandat 951.449 kb on + strandat 951.449 kb on + strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.537 kb on - strand, within PfGW456L13_844at 951.835 kb on - strand, within PfGW456L13_844at 952.240 kb on + strandat 952.240 kb on + strandat 952.240 kb on + strandat 952.241 kb on - strandat 952.262 kb on - strandat 952.288 kb on + strandat 952.288 kb on + strandat 952.288 kb on + strandat 952.288 kb on + strandat 952.288 kb on + strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.375 kb on + strandat 952.375 kb on + strandat 952.376 kb on - strandat 952.376 kb on - strandat 952.376 kb on - strandat 952.562 kb on - strand, within PfGW456L13_845at 952.562 kb on - strand, within PfGW456L13_845at 952.562 kb on - strand, within PfGW456L13_845at 952.637 kb on - strand, within PfGW456L13_845at 952.744 kb on + strand, within PfGW456L13_845at 952.744 kb on + strand, within PfGW456L13_845at 952.745 kb on - strand, within PfGW456L13_845at 952.745 kb on - strand, within PfGW456L13_845at 952.745 kb on - strand, within PfGW456L13_845at 952.745 kb on - strand, within PfGW456L13_845at 952.819 kb on + strand, within PfGW456L13_845at 952.819 kb on + strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 953.026 kb on + strand, within PfGW456L13_845

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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950,436 + PfGW456L13_842 0.72 +0.6
950,442 + PfGW456L13_842 0.73 -1.2
950,442 + PfGW456L13_842 0.73 -1.8
950,443 - PfGW456L13_842 0.73 -2.0
950,443 - PfGW456L13_842 0.73 -0.4
950,465 + PfGW456L13_842 0.76 +0.0
950,661 + -1.4
950,662 - +0.8
950,692 + +0.6
950,750 + -0.2
950,750 + -0.7
950,750 + -1.5
950,751 - +0.3
950,751 - +0.6
950,751 - -1.0
950,751 - -0.6
950,751 - +0.7
950,751 - -0.4
950,751 - -1.3
950,751 - +0.1
950,784 - PfGW456L13_843 0.13 +0.3
950,784 - PfGW456L13_843 0.13 -1.9
951,270 + PfGW456L13_843 0.80 -0.7
951,338 - PfGW456L13_843 0.90 -0.3
951,338 - PfGW456L13_843 0.90 -1.3
951,447 + +0.6
951,447 + +0.0
951,447 + +0.4
951,447 + -0.9
951,448 - +0.3
951,448 - -0.4
951,448 - +0.4
951,448 - +0.0
951,449 + -0.1
951,449 + -0.1
951,449 + -1.2
951,450 - -0.2
951,450 - -0.4
951,450 - +0.7
951,450 - -1.4
951,450 - +1.2
951,450 - +0.7
951,450 - +0.8
951,450 - -0.1
951,450 - -0.7
951,450 - +0.6
951,450 - +1.4
951,450 - -0.2
951,450 - -0.2
951,450 - +0.1
951,450 - +0.7
951,450 - -0.5
951,537 - PfGW456L13_844 0.13 -0.2
951,835 - PfGW456L13_844 0.49 -2.0
952,240 + -0.8
952,240 + -0.3
952,240 + -0.8
952,241 - -0.3
952,262 - -0.8
952,288 + -1.0
952,288 + -1.4
952,288 + -1.6
952,288 + -2.1
952,288 + -1.2
952,289 - +0.0
952,289 - -2.3
952,289 - -2.3
952,289 - -2.0
952,289 - -1.9
952,289 - -0.8
952,289 - -1.7
952,289 - -0.4
952,289 - -0.4
952,289 - -1.9
952,289 - -0.4
952,289 - -1.3
952,375 + -2.8
952,375 + -1.4
952,376 - -0.4
952,376 - -2.7
952,376 - -1.4
952,562 - PfGW456L13_845 0.24 -1.9
952,562 - PfGW456L13_845 0.24 -3.0
952,562 - PfGW456L13_845 0.24 -1.3
952,637 - PfGW456L13_845 0.30 -1.5
952,744 + PfGW456L13_845 0.39 -1.9
952,744 + PfGW456L13_845 0.39 -2.6
952,745 - PfGW456L13_845 0.39 -1.7
952,745 - PfGW456L13_845 0.39 -2.0
952,745 - PfGW456L13_845 0.39 -1.3
952,745 - PfGW456L13_845 0.39 -1.7
952,819 + PfGW456L13_845 0.45 -1.9
952,819 + PfGW456L13_845 0.45 -1.4
952,820 - PfGW456L13_845 0.45 -0.9
952,820 - PfGW456L13_845 0.45 -1.9
952,820 - PfGW456L13_845 0.45 -1.7
952,820 - PfGW456L13_845 0.45 +0.6
952,820 - PfGW456L13_845 0.45 -0.4
952,820 - PfGW456L13_845 0.45 -0.1
952,963 + PfGW456L13_845 0.56 -1.0
952,963 + PfGW456L13_845 0.56 -1.7
952,963 + PfGW456L13_845 0.56 -2.8
952,963 + PfGW456L13_845 0.56 -2.0
952,964 - PfGW456L13_845 0.56 -1.2
952,964 - PfGW456L13_845 0.56 -3.5
952,964 - PfGW456L13_845 0.56 -0.9
952,964 - PfGW456L13_845 0.56 +0.1
952,964 - PfGW456L13_845 0.56 -1.9
952,964 - PfGW456L13_845 0.56 -0.1
952,964 - PfGW456L13_845 0.56 -0.7
952,964 - PfGW456L13_845 0.56 -2.7
953,026 + PfGW456L13_845 0.61 -1.8

Or see this region's nucleotide sequence