Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_727 and PfGW456L13_728 are separated by 205 nucleotides PfGW456L13_728 and PfGW456L13_729 are separated by 11 nucleotides
PfGW456L13_727 - LysR family transcriptional regulator PA5437, at 825,944 to 826,891
_727
PfGW456L13_728 - Pyruvate carboxyl transferase subunit A (EC 6.4.1.1), at 827,097 to 828,512
_728
PfGW456L13_729 - Pyruvate carboxyl transferase subunit B (EC 6.4.1.1), at 828,524 to 830,332
_729
Position (kb)
827
828
829 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 826.196 kb on + strand, within PfGW456L13_727 at 826.196 kb on + strand, within PfGW456L13_727 at 826.196 kb on + strand, within PfGW456L13_727 at 826.197 kb on - strand, within PfGW456L13_727 at 826.197 kb on - strand, within PfGW456L13_727 at 826.197 kb on - strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.270 kb on - strand, within PfGW456L13_727 at 826.323 kb on + strand, within PfGW456L13_727 at 826.324 kb on - strand, within PfGW456L13_727 at 826.324 kb on - strand, within PfGW456L13_727 at 826.324 kb on - strand, within PfGW456L13_727 at 826.694 kb on + strand, within PfGW456L13_727 at 826.719 kb on + strand, within PfGW456L13_727 at 826.720 kb on - strand, within PfGW456L13_727 at 826.720 kb on - strand, within PfGW456L13_727 at 826.737 kb on + strand, within PfGW456L13_727 at 826.737 kb on + strand, within PfGW456L13_727 at 826.738 kb on - strand, within PfGW456L13_727 at 826.738 kb on - strand, within PfGW456L13_727 at 826.833 kb on + strand at 826.833 kb on + strand at 826.833 kb on + strand at 826.833 kb on + strand at 826.833 kb on + strand at 826.833 kb on + strand at 826.834 kb on - strand at 826.946 kb on - strand at 827.006 kb on - strand at 827.057 kb on + strand at 827.057 kb on + strand at 827.058 kb on - strand at 827.058 kb on - strand at 827.058 kb on - strand at 827.058 kb on - strand at 827.149 kb on + strand at 827.150 kb on - strand at 827.150 kb on - strand at 827.150 kb on - strand at 827.191 kb on - strand at 827.476 kb on + strand, within PfGW456L13_728 at 827.699 kb on + strand, within PfGW456L13_728 at 827.699 kb on + strand, within PfGW456L13_728 at 827.699 kb on + strand, within PfGW456L13_728 at 827.699 kb on + strand, within PfGW456L13_728 at 827.700 kb on - strand, within PfGW456L13_728 at 827.700 kb on - strand, within PfGW456L13_728 at 827.700 kb on - strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.895 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.944 kb on - strand, within PfGW456L13_728 at 827.944 kb on - strand, within PfGW456L13_728 at 827.944 kb on - strand, within PfGW456L13_728 at 827.944 kb on - strand, within PfGW456L13_728 at 827.944 kb on - strand, within PfGW456L13_728 at 828.165 kb on + strand, within PfGW456L13_728 at 828.165 kb on + strand, within PfGW456L13_728 at 828.165 kb on + strand, within PfGW456L13_728 at 828.166 kb on - strand, within PfGW456L13_728 at 828.166 kb on - strand, within PfGW456L13_728 at 828.166 kb on - strand, within PfGW456L13_728 at 828.166 kb on - strand, within PfGW456L13_728 at 828.166 kb on - strand, within PfGW456L13_728 at 828.207 kb on + strand, within PfGW456L13_728 at 828.207 kb on + strand, within PfGW456L13_728 at 828.208 kb on - strand, within PfGW456L13_728 at 828.208 kb on - strand, within PfGW456L13_728 at 828.208 kb on - strand, within PfGW456L13_728 at 828.208 kb on - strand, within PfGW456L13_728 at 828.208 kb on - strand, within PfGW456L13_728 at 828.235 kb on - strand, within PfGW456L13_728 at 828.235 kb on - strand, within PfGW456L13_728 at 828.351 kb on + strand, within PfGW456L13_728 at 828.352 kb on - strand, within PfGW456L13_728 at 828.354 kb on + strand, within PfGW456L13_728 at 828.355 kb on - strand, within PfGW456L13_728 at 828.355 kb on - strand, within PfGW456L13_728 at 828.355 kb on - strand, within PfGW456L13_728 at 828.355 kb on - strand, within PfGW456L13_728 at 828.438 kb on + strand at 828.438 kb on + strand at 828.438 kb on + strand at 828.438 kb on + strand at 828.438 kb on + strand at 828.517 kb on + strand at 828.517 kb on + strand at 828.517 kb on + strand at 828.517 kb on + strand at 828.517 kb on + strand at 828.517 kb on + strand at 828.517 kb on + strand at 828.518 kb on - strand at 828.518 kb on - strand at 828.518 kb on - strand at 828.518 kb on - strand at 828.554 kb on - strand at 828.554 kb on - strand at 828.554 kb on - strand at 828.645 kb on - strand at 828.690 kb on + strand at 828.690 kb on + strand at 828.690 kb on + strand at 828.690 kb on + strand at 828.690 kb on + strand at 828.691 kb on - strand at 828.748 kb on + strand, within PfGW456L13_729 at 828.895 kb on + strand, within PfGW456L13_729 at 828.895 kb on + strand, within PfGW456L13_729 at 828.959 kb on + strand, within PfGW456L13_729 at 828.959 kb on + strand, within PfGW456L13_729 at 829.331 kb on + strand, within PfGW456L13_729 at 829.331 kb on + strand, within PfGW456L13_729 at 829.331 kb on + strand, within PfGW456L13_729 at 829.331 kb on + strand, within PfGW456L13_729 at 829.331 kb on + strand, within PfGW456L13_729 at 829.331 kb on + strand, within PfGW456L13_729 at 829.332 kb on - strand, within PfGW456L13_729 at 829.332 kb on - strand, within PfGW456L13_729 at 829.332 kb on - strand, within PfGW456L13_729 at 829.332 kb on - strand, within PfGW456L13_729 at 829.337 kb on + strand, within PfGW456L13_729 at 829.337 kb on + strand, within PfGW456L13_729 at 829.337 kb on + strand, within PfGW456L13_729 at 829.338 kb on - strand, within PfGW456L13_729 at 829.338 kb on - strand, within PfGW456L13_729 at 829.338 kb on - strand, within PfGW456L13_729 at 829.355 kb on + strand, within PfGW456L13_729 at 829.355 kb on + strand, within PfGW456L13_729 at 829.355 kb on + strand, within PfGW456L13_729 at 829.355 kb on + strand, within PfGW456L13_729 at 829.356 kb on - strand, within PfGW456L13_729 at 829.356 kb on - strand, within PfGW456L13_729 at 829.356 kb on - strand, within PfGW456L13_729
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 826,196 + PfGW456L13_727 0.27 -0.8 826,196 + PfGW456L13_727 0.27 -0.2 826,196 + PfGW456L13_727 0.27 -0.3 826,197 - PfGW456L13_727 0.27 -1.7 826,197 - PfGW456L13_727 0.27 -0.1 826,197 - PfGW456L13_727 0.27 +1.3 826,269 + PfGW456L13_727 0.34 -0.3 826,269 + PfGW456L13_727 0.34 -0.8 826,269 + PfGW456L13_727 0.34 -1.2 826,269 + PfGW456L13_727 0.34 -0.6 826,269 + PfGW456L13_727 0.34 -2.4 826,270 - PfGW456L13_727 0.34 -0.8 826,323 + PfGW456L13_727 0.40 -2.9 826,324 - PfGW456L13_727 0.40 -0.8 826,324 - PfGW456L13_727 0.40 -0.8 826,324 - PfGW456L13_727 0.40 -0.2 826,694 + PfGW456L13_727 0.79 -0.8 826,719 + PfGW456L13_727 0.82 -0.2 826,720 - PfGW456L13_727 0.82 -0.7 826,720 - PfGW456L13_727 0.82 -1.5 826,737 + PfGW456L13_727 0.84 -1.0 826,737 + PfGW456L13_727 0.84 -1.6 826,738 - PfGW456L13_727 0.84 -0.4 826,738 - PfGW456L13_727 0.84 +0.1 826,833 + -0.1 826,833 + +1.2 826,833 + -1.0 826,833 + -0.7 826,833 + -0.5 826,833 + -0.1 826,834 - -0.3 826,946 - -0.5 827,006 - -0.6 827,057 + -0.1 827,057 + -0.6 827,058 - -0.9 827,058 - -0.3 827,058 - -1.5 827,058 - -2.5 827,149 + -1.2 827,150 - -0.6 827,150 - -0.4 827,150 - -0.9 827,191 - +0.6 827,476 + PfGW456L13_728 0.27 +0.4 827,699 + PfGW456L13_728 0.43 -0.7 827,699 + PfGW456L13_728 0.43 -0.2 827,699 + PfGW456L13_728 0.43 -0.6 827,699 + PfGW456L13_728 0.43 -0.9 827,700 - PfGW456L13_728 0.43 -1.0 827,700 - PfGW456L13_728 0.43 -2.4 827,700 - PfGW456L13_728 0.43 -0.9 827,853 + PfGW456L13_728 0.53 -2.4 827,853 + PfGW456L13_728 0.53 -0.1 827,853 + PfGW456L13_728 0.53 +0.2 827,853 + PfGW456L13_728 0.53 -0.9 827,853 + PfGW456L13_728 0.53 -1.4 827,854 - PfGW456L13_728 0.53 -0.4 827,854 - PfGW456L13_728 0.53 -0.7 827,854 - PfGW456L13_728 0.53 -2.3 827,854 - PfGW456L13_728 0.53 -1.9 827,854 - PfGW456L13_728 0.53 -2.7 827,854 - PfGW456L13_728 0.53 -1.3 827,854 - PfGW456L13_728 0.53 -0.2 827,895 + PfGW456L13_728 0.56 -0.1 827,943 + PfGW456L13_728 0.60 -0.6 827,943 + PfGW456L13_728 0.60 -3.1 827,943 + PfGW456L13_728 0.60 -2.2 827,943 + PfGW456L13_728 0.60 -0.3 827,943 + PfGW456L13_728 0.60 -0.7 827,943 + PfGW456L13_728 0.60 -3.0 827,943 + PfGW456L13_728 0.60 -0.6 827,943 + PfGW456L13_728 0.60 -0.1 827,944 - PfGW456L13_728 0.60 -0.8 827,944 - PfGW456L13_728 0.60 -2.6 827,944 - PfGW456L13_728 0.60 -1.6 827,944 - PfGW456L13_728 0.60 +0.8 827,944 - PfGW456L13_728 0.60 -0.9 828,165 + PfGW456L13_728 0.75 +0.5 828,165 + PfGW456L13_728 0.75 -1.4 828,165 + PfGW456L13_728 0.75 -1.1 828,166 - PfGW456L13_728 0.75 -0.7 828,166 - PfGW456L13_728 0.75 -1.3 828,166 - PfGW456L13_728 0.75 -1.6 828,166 - PfGW456L13_728 0.75 -0.7 828,166 - PfGW456L13_728 0.75 +0.1 828,207 + PfGW456L13_728 0.78 -0.5 828,207 + PfGW456L13_728 0.78 -0.6 828,208 - PfGW456L13_728 0.78 +0.2 828,208 - PfGW456L13_728 0.78 +0.1 828,208 - PfGW456L13_728 0.78 -0.9 828,208 - PfGW456L13_728 0.78 -2.6 828,208 - PfGW456L13_728 0.78 -0.4 828,235 - PfGW456L13_728 0.80 -1.6 828,235 - PfGW456L13_728 0.80 -0.8 828,351 + PfGW456L13_728 0.89 -0.1 828,352 - PfGW456L13_728 0.89 -0.4 828,354 + PfGW456L13_728 0.89 -0.9 828,355 - PfGW456L13_728 0.89 -0.6 828,355 - PfGW456L13_728 0.89 +0.1 828,355 - PfGW456L13_728 0.89 -0.2 828,355 - PfGW456L13_728 0.89 -1.0 828,438 + +1.6 828,438 + -0.2 828,438 + +0.6 828,438 + -2.3 828,438 + +0.2 828,517 + +0.3 828,517 + -1.3 828,517 + -2.3 828,517 + +0.1 828,517 + -0.7 828,517 + -0.1 828,517 + +0.5 828,518 - -0.2 828,518 - -1.6 828,518 - +0.2 828,518 - -0.7 828,554 - -0.6 828,554 - -0.9 828,554 - -3.3 828,645 - -0.0 828,690 + +0.2 828,690 + +0.1 828,690 + -1.3 828,690 + -2.3 828,690 + -0.7 828,691 - -0.7 828,748 + PfGW456L13_729 0.12 -0.3 828,895 + PfGW456L13_729 0.21 -1.9 828,895 + PfGW456L13_729 0.21 -1.8 828,959 + PfGW456L13_729 0.24 +0.3 828,959 + PfGW456L13_729 0.24 +0.4 829,331 + PfGW456L13_729 0.45 +0.3 829,331 + PfGW456L13_729 0.45 -0.5 829,331 + PfGW456L13_729 0.45 -0.4 829,331 + PfGW456L13_729 0.45 -0.4 829,331 + PfGW456L13_729 0.45 -0.2 829,331 + PfGW456L13_729 0.45 -0.1 829,332 - PfGW456L13_729 0.45 -0.9 829,332 - PfGW456L13_729 0.45 -0.6 829,332 - PfGW456L13_729 0.45 -2.5 829,332 - PfGW456L13_729 0.45 -0.7 829,337 + PfGW456L13_729 0.45 -2.1 829,337 + PfGW456L13_729 0.45 -1.2 829,337 + PfGW456L13_729 0.45 -0.9 829,338 - PfGW456L13_729 0.45 +0.3 829,338 - PfGW456L13_729 0.45 +1.1 829,338 - PfGW456L13_729 0.45 -0.7 829,355 + PfGW456L13_729 0.46 +0.4 829,355 + PfGW456L13_729 0.46 -1.3 829,355 + PfGW456L13_729 0.46 -0.5 829,355 + PfGW456L13_729 0.46 -0.1 829,356 - PfGW456L13_729 0.46 -0.5 829,356 - PfGW456L13_729 0.46 -0.5 829,356 - PfGW456L13_729 0.46 -0.4
Or see this region's nucleotide sequence