Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_728

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_727 and PfGW456L13_728 are separated by 205 nucleotidesPfGW456L13_728 and PfGW456L13_729 are separated by 11 nucleotides PfGW456L13_727 - LysR family transcriptional regulator PA5437, at 825,944 to 826,891 _727 PfGW456L13_728 - Pyruvate carboxyl transferase subunit A (EC 6.4.1.1), at 827,097 to 828,512 _728 PfGW456L13_729 - Pyruvate carboxyl transferase subunit B (EC 6.4.1.1), at 828,524 to 830,332 _729 Position (kb) 827 828 829Strain fitness (log2 ratio) -3 -2 -1 0 1at 826.196 kb on + strand, within PfGW456L13_727at 826.196 kb on + strand, within PfGW456L13_727at 826.196 kb on + strand, within PfGW456L13_727at 826.197 kb on - strand, within PfGW456L13_727at 826.197 kb on - strand, within PfGW456L13_727at 826.197 kb on - strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.270 kb on - strand, within PfGW456L13_727at 826.323 kb on + strand, within PfGW456L13_727at 826.324 kb on - strand, within PfGW456L13_727at 826.324 kb on - strand, within PfGW456L13_727at 826.324 kb on - strand, within PfGW456L13_727at 826.694 kb on + strand, within PfGW456L13_727at 826.719 kb on + strand, within PfGW456L13_727at 826.720 kb on - strand, within PfGW456L13_727at 826.720 kb on - strand, within PfGW456L13_727at 826.737 kb on + strand, within PfGW456L13_727at 826.737 kb on + strand, within PfGW456L13_727at 826.738 kb on - strand, within PfGW456L13_727at 826.738 kb on - strand, within PfGW456L13_727at 826.833 kb on + strandat 826.833 kb on + strandat 826.833 kb on + strandat 826.833 kb on + strandat 826.833 kb on + strandat 826.833 kb on + strandat 826.834 kb on - strandat 826.946 kb on - strandat 827.006 kb on - strandat 827.057 kb on + strandat 827.057 kb on + strandat 827.058 kb on - strandat 827.058 kb on - strandat 827.058 kb on - strandat 827.058 kb on - strandat 827.149 kb on + strandat 827.150 kb on - strandat 827.150 kb on - strandat 827.150 kb on - strandat 827.191 kb on - strandat 827.476 kb on + strand, within PfGW456L13_728at 827.699 kb on + strand, within PfGW456L13_728at 827.699 kb on + strand, within PfGW456L13_728at 827.699 kb on + strand, within PfGW456L13_728at 827.699 kb on + strand, within PfGW456L13_728at 827.700 kb on - strand, within PfGW456L13_728at 827.700 kb on - strand, within PfGW456L13_728at 827.700 kb on - strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.895 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.944 kb on - strand, within PfGW456L13_728at 827.944 kb on - strand, within PfGW456L13_728at 827.944 kb on - strand, within PfGW456L13_728at 827.944 kb on - strand, within PfGW456L13_728at 827.944 kb on - strand, within PfGW456L13_728at 828.165 kb on + strand, within PfGW456L13_728at 828.165 kb on + strand, within PfGW456L13_728at 828.165 kb on + strand, within PfGW456L13_728at 828.166 kb on - strand, within PfGW456L13_728at 828.166 kb on - strand, within PfGW456L13_728at 828.166 kb on - strand, within PfGW456L13_728at 828.166 kb on - strand, within PfGW456L13_728at 828.166 kb on - strand, within PfGW456L13_728at 828.207 kb on + strand, within PfGW456L13_728at 828.207 kb on + strand, within PfGW456L13_728at 828.208 kb on - strand, within PfGW456L13_728at 828.208 kb on - strand, within PfGW456L13_728at 828.208 kb on - strand, within PfGW456L13_728at 828.208 kb on - strand, within PfGW456L13_728at 828.208 kb on - strand, within PfGW456L13_728at 828.235 kb on - strand, within PfGW456L13_728at 828.235 kb on - strand, within PfGW456L13_728at 828.351 kb on + strand, within PfGW456L13_728at 828.352 kb on - strand, within PfGW456L13_728at 828.354 kb on + strand, within PfGW456L13_728at 828.355 kb on - strand, within PfGW456L13_728at 828.355 kb on - strand, within PfGW456L13_728at 828.355 kb on - strand, within PfGW456L13_728at 828.355 kb on - strand, within PfGW456L13_728at 828.438 kb on + strandat 828.438 kb on + strandat 828.438 kb on + strandat 828.438 kb on + strandat 828.438 kb on + strandat 828.517 kb on + strandat 828.517 kb on + strandat 828.517 kb on + strandat 828.517 kb on + strandat 828.517 kb on + strandat 828.517 kb on + strandat 828.517 kb on + strandat 828.518 kb on - strandat 828.518 kb on - strandat 828.518 kb on - strandat 828.518 kb on - strandat 828.554 kb on - strandat 828.554 kb on - strandat 828.554 kb on - strandat 828.645 kb on - strandat 828.690 kb on + strandat 828.690 kb on + strandat 828.690 kb on + strandat 828.690 kb on + strandat 828.690 kb on + strandat 828.691 kb on - strandat 828.748 kb on + strand, within PfGW456L13_729at 828.895 kb on + strand, within PfGW456L13_729at 828.895 kb on + strand, within PfGW456L13_729at 828.959 kb on + strand, within PfGW456L13_729at 828.959 kb on + strand, within PfGW456L13_729at 829.331 kb on + strand, within PfGW456L13_729at 829.331 kb on + strand, within PfGW456L13_729at 829.331 kb on + strand, within PfGW456L13_729at 829.331 kb on + strand, within PfGW456L13_729at 829.331 kb on + strand, within PfGW456L13_729at 829.331 kb on + strand, within PfGW456L13_729at 829.332 kb on - strand, within PfGW456L13_729at 829.332 kb on - strand, within PfGW456L13_729at 829.332 kb on - strand, within PfGW456L13_729at 829.332 kb on - strand, within PfGW456L13_729at 829.337 kb on + strand, within PfGW456L13_729at 829.337 kb on + strand, within PfGW456L13_729at 829.337 kb on + strand, within PfGW456L13_729at 829.338 kb on - strand, within PfGW456L13_729at 829.338 kb on - strand, within PfGW456L13_729at 829.338 kb on - strand, within PfGW456L13_729at 829.355 kb on + strand, within PfGW456L13_729at 829.355 kb on + strand, within PfGW456L13_729at 829.355 kb on + strand, within PfGW456L13_729at 829.355 kb on + strand, within PfGW456L13_729at 829.356 kb on - strand, within PfGW456L13_729at 829.356 kb on - strand, within PfGW456L13_729at 829.356 kb on - strand, within PfGW456L13_729

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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826,196 + PfGW456L13_727 0.27 -0.8
826,196 + PfGW456L13_727 0.27 -0.2
826,196 + PfGW456L13_727 0.27 -0.3
826,197 - PfGW456L13_727 0.27 -1.7
826,197 - PfGW456L13_727 0.27 -0.1
826,197 - PfGW456L13_727 0.27 +1.3
826,269 + PfGW456L13_727 0.34 -0.3
826,269 + PfGW456L13_727 0.34 -0.8
826,269 + PfGW456L13_727 0.34 -1.2
826,269 + PfGW456L13_727 0.34 -0.6
826,269 + PfGW456L13_727 0.34 -2.4
826,270 - PfGW456L13_727 0.34 -0.8
826,323 + PfGW456L13_727 0.40 -2.9
826,324 - PfGW456L13_727 0.40 -0.8
826,324 - PfGW456L13_727 0.40 -0.8
826,324 - PfGW456L13_727 0.40 -0.2
826,694 + PfGW456L13_727 0.79 -0.8
826,719 + PfGW456L13_727 0.82 -0.2
826,720 - PfGW456L13_727 0.82 -0.7
826,720 - PfGW456L13_727 0.82 -1.5
826,737 + PfGW456L13_727 0.84 -1.0
826,737 + PfGW456L13_727 0.84 -1.6
826,738 - PfGW456L13_727 0.84 -0.4
826,738 - PfGW456L13_727 0.84 +0.1
826,833 + -0.1
826,833 + +1.2
826,833 + -1.0
826,833 + -0.7
826,833 + -0.5
826,833 + -0.1
826,834 - -0.3
826,946 - -0.5
827,006 - -0.6
827,057 + -0.1
827,057 + -0.6
827,058 - -0.9
827,058 - -0.3
827,058 - -1.5
827,058 - -2.5
827,149 + -1.2
827,150 - -0.6
827,150 - -0.4
827,150 - -0.9
827,191 - +0.6
827,476 + PfGW456L13_728 0.27 +0.4
827,699 + PfGW456L13_728 0.43 -0.7
827,699 + PfGW456L13_728 0.43 -0.2
827,699 + PfGW456L13_728 0.43 -0.6
827,699 + PfGW456L13_728 0.43 -0.9
827,700 - PfGW456L13_728 0.43 -1.0
827,700 - PfGW456L13_728 0.43 -2.4
827,700 - PfGW456L13_728 0.43 -0.9
827,853 + PfGW456L13_728 0.53 -2.4
827,853 + PfGW456L13_728 0.53 -0.1
827,853 + PfGW456L13_728 0.53 +0.2
827,853 + PfGW456L13_728 0.53 -0.9
827,853 + PfGW456L13_728 0.53 -1.4
827,854 - PfGW456L13_728 0.53 -0.4
827,854 - PfGW456L13_728 0.53 -0.7
827,854 - PfGW456L13_728 0.53 -2.3
827,854 - PfGW456L13_728 0.53 -1.9
827,854 - PfGW456L13_728 0.53 -2.7
827,854 - PfGW456L13_728 0.53 -1.3
827,854 - PfGW456L13_728 0.53 -0.2
827,895 + PfGW456L13_728 0.56 -0.1
827,943 + PfGW456L13_728 0.60 -0.6
827,943 + PfGW456L13_728 0.60 -3.1
827,943 + PfGW456L13_728 0.60 -2.2
827,943 + PfGW456L13_728 0.60 -0.3
827,943 + PfGW456L13_728 0.60 -0.7
827,943 + PfGW456L13_728 0.60 -3.0
827,943 + PfGW456L13_728 0.60 -0.6
827,943 + PfGW456L13_728 0.60 -0.1
827,944 - PfGW456L13_728 0.60 -0.8
827,944 - PfGW456L13_728 0.60 -2.6
827,944 - PfGW456L13_728 0.60 -1.6
827,944 - PfGW456L13_728 0.60 +0.8
827,944 - PfGW456L13_728 0.60 -0.9
828,165 + PfGW456L13_728 0.75 +0.5
828,165 + PfGW456L13_728 0.75 -1.4
828,165 + PfGW456L13_728 0.75 -1.1
828,166 - PfGW456L13_728 0.75 -0.7
828,166 - PfGW456L13_728 0.75 -1.3
828,166 - PfGW456L13_728 0.75 -1.6
828,166 - PfGW456L13_728 0.75 -0.7
828,166 - PfGW456L13_728 0.75 +0.1
828,207 + PfGW456L13_728 0.78 -0.5
828,207 + PfGW456L13_728 0.78 -0.6
828,208 - PfGW456L13_728 0.78 +0.2
828,208 - PfGW456L13_728 0.78 +0.1
828,208 - PfGW456L13_728 0.78 -0.9
828,208 - PfGW456L13_728 0.78 -2.6
828,208 - PfGW456L13_728 0.78 -0.4
828,235 - PfGW456L13_728 0.80 -1.6
828,235 - PfGW456L13_728 0.80 -0.8
828,351 + PfGW456L13_728 0.89 -0.1
828,352 - PfGW456L13_728 0.89 -0.4
828,354 + PfGW456L13_728 0.89 -0.9
828,355 - PfGW456L13_728 0.89 -0.6
828,355 - PfGW456L13_728 0.89 +0.1
828,355 - PfGW456L13_728 0.89 -0.2
828,355 - PfGW456L13_728 0.89 -1.0
828,438 + +1.6
828,438 + -0.2
828,438 + +0.6
828,438 + -2.3
828,438 + +0.2
828,517 + +0.3
828,517 + -1.3
828,517 + -2.3
828,517 + +0.1
828,517 + -0.7
828,517 + -0.1
828,517 + +0.5
828,518 - -0.2
828,518 - -1.6
828,518 - +0.2
828,518 - -0.7
828,554 - -0.6
828,554 - -0.9
828,554 - -3.3
828,645 - -0.0
828,690 + +0.2
828,690 + +0.1
828,690 + -1.3
828,690 + -2.3
828,690 + -0.7
828,691 - -0.7
828,748 + PfGW456L13_729 0.12 -0.3
828,895 + PfGW456L13_729 0.21 -1.9
828,895 + PfGW456L13_729 0.21 -1.8
828,959 + PfGW456L13_729 0.24 +0.3
828,959 + PfGW456L13_729 0.24 +0.4
829,331 + PfGW456L13_729 0.45 +0.3
829,331 + PfGW456L13_729 0.45 -0.5
829,331 + PfGW456L13_729 0.45 -0.4
829,331 + PfGW456L13_729 0.45 -0.4
829,331 + PfGW456L13_729 0.45 -0.2
829,331 + PfGW456L13_729 0.45 -0.1
829,332 - PfGW456L13_729 0.45 -0.9
829,332 - PfGW456L13_729 0.45 -0.6
829,332 - PfGW456L13_729 0.45 -2.5
829,332 - PfGW456L13_729 0.45 -0.7
829,337 + PfGW456L13_729 0.45 -2.1
829,337 + PfGW456L13_729 0.45 -1.2
829,337 + PfGW456L13_729 0.45 -0.9
829,338 - PfGW456L13_729 0.45 +0.3
829,338 - PfGW456L13_729 0.45 +1.1
829,338 - PfGW456L13_729 0.45 -0.7
829,355 + PfGW456L13_729 0.46 +0.4
829,355 + PfGW456L13_729 0.46 -1.3
829,355 + PfGW456L13_729 0.46 -0.5
829,355 + PfGW456L13_729 0.46 -0.1
829,356 - PfGW456L13_729 0.46 -0.5
829,356 - PfGW456L13_729 0.46 -0.5
829,356 - PfGW456L13_729 0.46 -0.4

Or see this region's nucleotide sequence