Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_283

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_282 and PfGW456L13_283 are separated by 230 nucleotidesPfGW456L13_283 and PfGW456L13_284 are separated by 183 nucleotides PfGW456L13_282 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 329,768 to 332,101 _282 PfGW456L13_283 - NADP-dependent malic enzyme (EC 1.1.1.40), at 332,332 to 333,600 _283 PfGW456L13_284 - Thermonuclease family protein, at 333,784 to 334,572 _284 Position (kb) 332 333 334Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 331.400 kb on + strand, within PfGW456L13_282at 331.401 kb on - strand, within PfGW456L13_282at 331.415 kb on + strand, within PfGW456L13_282at 331.416 kb on - strand, within PfGW456L13_282at 331.416 kb on - strand, within PfGW456L13_282at 331.571 kb on - strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.761 kb on - strand, within PfGW456L13_282at 331.773 kb on - strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.900 kb on + strandat 331.901 kb on - strandat 331.985 kb on + strandat 332.011 kb on + strandat 332.012 kb on - strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.134 kb on + strandat 332.134 kb on + strandat 332.134 kb on + strandat 332.134 kb on + strandat 332.134 kb on + strandat 332.135 kb on - strandat 332.207 kb on + strandat 332.251 kb on + strandat 332.252 kb on - strandat 332.252 kb on - strandat 332.252 kb on - strandat 332.252 kb on - strandat 332.252 kb on - strandat 332.324 kb on - strandat 332.477 kb on + strand, within PfGW456L13_283at 332.477 kb on + strand, within PfGW456L13_283at 332.477 kb on + strand, within PfGW456L13_283at 332.477 kb on + strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.647 kb on + strand, within PfGW456L13_283at 332.648 kb on - strand, within PfGW456L13_283at 332.900 kb on + strand, within PfGW456L13_283at 332.900 kb on + strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.984 kb on - strand, within PfGW456L13_283at 332.984 kb on - strand, within PfGW456L13_283at 333.138 kb on + strand, within PfGW456L13_283at 333.317 kb on - strand, within PfGW456L13_283at 333.425 kb on + strand, within PfGW456L13_283at 333.425 kb on + strand, within PfGW456L13_283at 333.426 kb on - strand, within PfGW456L13_283at 333.426 kb on - strand, within PfGW456L13_283at 333.426 kb on - strand, within PfGW456L13_283at 333.426 kb on - strand, within PfGW456L13_283at 333.426 kb on - strand, within PfGW456L13_283at 333.431 kb on + strand, within PfGW456L13_283at 333.570 kb on - strandat 333.619 kb on - strandat 333.741 kb on + strandat 333.931 kb on - strand, within PfGW456L13_284at 333.968 kb on - strand, within PfGW456L13_284at 333.968 kb on - strand, within PfGW456L13_284at 333.982 kb on + strand, within PfGW456L13_284at 333.983 kb on - strand, within PfGW456L13_284at 334.079 kb on - strand, within PfGW456L13_284at 334.235 kb on + strand, within PfGW456L13_284at 334.236 kb on - strand, within PfGW456L13_284at 334.236 kb on - strand, within PfGW456L13_284at 334.236 kb on - strand, within PfGW456L13_284at 334.236 kb on - strand, within PfGW456L13_284at 334.534 kb on - strandat 334.534 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
331,400 + PfGW456L13_282 0.70 -0.4
331,401 - PfGW456L13_282 0.70 -0.9
331,415 + PfGW456L13_282 0.71 +0.5
331,416 - PfGW456L13_282 0.71 -0.9
331,416 - PfGW456L13_282 0.71 +1.2
331,571 - PfGW456L13_282 0.77 +1.9
331,628 + PfGW456L13_282 0.80 -0.1
331,628 + PfGW456L13_282 0.80 +1.5
331,628 + PfGW456L13_282 0.80 -0.1
331,628 + PfGW456L13_282 0.80 +0.1
331,628 + PfGW456L13_282 0.80 -0.5
331,628 + PfGW456L13_282 0.80 +0.0
331,628 + PfGW456L13_282 0.80 -1.4
331,628 + PfGW456L13_282 0.80 +0.4
331,628 + PfGW456L13_282 0.80 +0.2
331,629 - PfGW456L13_282 0.80 -0.3
331,629 - PfGW456L13_282 0.80 -2.0
331,629 - PfGW456L13_282 0.80 -1.7
331,629 - PfGW456L13_282 0.80 +0.1
331,629 - PfGW456L13_282 0.80 +0.6
331,629 - PfGW456L13_282 0.80 -0.3
331,629 - PfGW456L13_282 0.80 -0.7
331,629 - PfGW456L13_282 0.80 -1.0
331,629 - PfGW456L13_282 0.80 -0.9
331,629 - PfGW456L13_282 0.80 -2.5
331,629 - PfGW456L13_282 0.80 -0.3
331,629 - PfGW456L13_282 0.80 +0.1
331,629 - PfGW456L13_282 0.80 +0.1
331,629 - PfGW456L13_282 0.80 -1.1
331,629 - PfGW456L13_282 0.80 -1.5
331,761 - PfGW456L13_282 0.85 -0.0
331,773 - PfGW456L13_282 0.86 -1.1
331,865 + PfGW456L13_282 0.90 -0.8
331,865 + PfGW456L13_282 0.90 -3.1
331,865 + PfGW456L13_282 0.90 +0.1
331,865 + PfGW456L13_282 0.90 -1.4
331,865 + PfGW456L13_282 0.90 -0.4
331,865 + PfGW456L13_282 0.90 -1.3
331,866 - PfGW456L13_282 0.90 +1.3
331,866 - PfGW456L13_282 0.90 -1.8
331,866 - PfGW456L13_282 0.90 -2.1
331,866 - PfGW456L13_282 0.90 +0.5
331,866 - PfGW456L13_282 0.90 -0.3
331,866 - PfGW456L13_282 0.90 +0.1
331,866 - PfGW456L13_282 0.90 +2.1
331,900 + -0.7
331,901 - -2.0
331,985 + +0.8
332,011 + +0.5
332,012 - -0.7
332,116 + +0.0
332,116 + -0.2
332,116 + +0.3
332,116 + +0.2
332,116 + -0.5
332,116 + +1.2
332,117 - -1.0
332,117 - +0.4
332,117 - +0.5
332,117 - -0.6
332,117 - -0.4
332,117 - +0.5
332,134 + -0.7
332,134 + +0.5
332,134 + +0.9
332,134 + +0.5
332,134 + -0.1
332,135 - +1.7
332,207 + -1.1
332,251 + -0.3
332,252 - -0.2
332,252 - +0.5
332,252 - -1.0
332,252 - -0.3
332,252 - +0.7
332,324 - +0.4
332,477 + PfGW456L13_283 0.11 -0.9
332,477 + PfGW456L13_283 0.11 +0.8
332,477 + PfGW456L13_283 0.11 -1.2
332,477 + PfGW456L13_283 0.11 -2.4
332,478 - PfGW456L13_283 0.12 -0.5
332,478 - PfGW456L13_283 0.12 -1.4
332,478 - PfGW456L13_283 0.12 -0.5
332,478 - PfGW456L13_283 0.12 -0.8
332,478 - PfGW456L13_283 0.12 -0.6
332,647 + PfGW456L13_283 0.25 -1.5
332,648 - PfGW456L13_283 0.25 -0.3
332,900 + PfGW456L13_283 0.45 +0.5
332,900 + PfGW456L13_283 0.45 -0.4
332,901 - PfGW456L13_283 0.45 -2.3
332,901 - PfGW456L13_283 0.45 -2.6
332,901 - PfGW456L13_283 0.45 -0.5
332,901 - PfGW456L13_283 0.45 -1.4
332,954 + PfGW456L13_283 0.49 +0.1
332,954 + PfGW456L13_283 0.49 -1.5
332,954 + PfGW456L13_283 0.49 -0.7
332,954 + PfGW456L13_283 0.49 +0.3
332,954 + PfGW456L13_283 0.49 +1.1
332,954 + PfGW456L13_283 0.49 -1.4
332,954 + PfGW456L13_283 0.49 +0.5
332,954 + PfGW456L13_283 0.49 -2.0
332,954 + PfGW456L13_283 0.49 +0.3
332,954 + PfGW456L13_283 0.49 -1.0
332,954 + PfGW456L13_283 0.49 -1.7
332,955 - PfGW456L13_283 0.49 +0.2
332,955 - PfGW456L13_283 0.49 -0.1
332,955 - PfGW456L13_283 0.49 -0.9
332,955 - PfGW456L13_283 0.49 -0.8
332,955 - PfGW456L13_283 0.49 +0.0
332,955 - PfGW456L13_283 0.49 -0.2
332,984 - PfGW456L13_283 0.51 -1.5
332,984 - PfGW456L13_283 0.51 -1.5
333,138 + PfGW456L13_283 0.64 -0.8
333,317 - PfGW456L13_283 0.78 -1.8
333,425 + PfGW456L13_283 0.86 -1.7
333,425 + PfGW456L13_283 0.86 -1.8
333,426 - PfGW456L13_283 0.86 -2.6
333,426 - PfGW456L13_283 0.86 -2.6
333,426 - PfGW456L13_283 0.86 -0.9
333,426 - PfGW456L13_283 0.86 -1.2
333,426 - PfGW456L13_283 0.86 -0.4
333,431 + PfGW456L13_283 0.87 -1.4
333,570 - +0.2
333,619 - +0.6
333,741 + -0.0
333,931 - PfGW456L13_284 0.19 +0.2
333,968 - PfGW456L13_284 0.23 +0.8
333,968 - PfGW456L13_284 0.23 +0.7
333,982 + PfGW456L13_284 0.25 -0.8
333,983 - PfGW456L13_284 0.25 -0.8
334,079 - PfGW456L13_284 0.37 +1.5
334,235 + PfGW456L13_284 0.57 +0.0
334,236 - PfGW456L13_284 0.57 +0.3
334,236 - PfGW456L13_284 0.57 -0.5
334,236 - PfGW456L13_284 0.57 -0.1
334,236 - PfGW456L13_284 0.57 -0.1
334,534 - -0.1
334,534 - +0.3

Or see this region's nucleotide sequence