Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_282 and PfGW456L13_283 are separated by 230 nucleotides PfGW456L13_283 and PfGW456L13_284 are separated by 183 nucleotides
PfGW456L13_282 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 329,768 to 332,101
_282
PfGW456L13_283 - NADP-dependent malic enzyme (EC 1.1.1.40), at 332,332 to 333,600
_283
PfGW456L13_284 - Thermonuclease family protein, at 333,784 to 334,572
_284
Position (kb)
332
333
334 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 331.400 kb on + strand, within PfGW456L13_282 at 331.401 kb on - strand, within PfGW456L13_282 at 331.415 kb on + strand, within PfGW456L13_282 at 331.416 kb on - strand, within PfGW456L13_282 at 331.416 kb on - strand, within PfGW456L13_282 at 331.571 kb on - strand, within PfGW456L13_282 at 331.628 kb on + strand, within PfGW456L13_282 at 331.628 kb on + strand, within PfGW456L13_282 at 331.628 kb on + strand, within PfGW456L13_282 at 331.628 kb on + strand, within PfGW456L13_282 at 331.628 kb on + strand, within PfGW456L13_282 at 331.628 kb on + strand, within PfGW456L13_282 at 331.628 kb on + strand, within PfGW456L13_282 at 331.628 kb on + strand, within PfGW456L13_282 at 331.628 kb on + strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.629 kb on - strand, within PfGW456L13_282 at 331.761 kb on - strand, within PfGW456L13_282 at 331.773 kb on - strand, within PfGW456L13_282 at 331.865 kb on + strand, within PfGW456L13_282 at 331.865 kb on + strand, within PfGW456L13_282 at 331.865 kb on + strand, within PfGW456L13_282 at 331.865 kb on + strand, within PfGW456L13_282 at 331.865 kb on + strand, within PfGW456L13_282 at 331.865 kb on + strand, within PfGW456L13_282 at 331.866 kb on - strand, within PfGW456L13_282 at 331.866 kb on - strand, within PfGW456L13_282 at 331.866 kb on - strand, within PfGW456L13_282 at 331.866 kb on - strand, within PfGW456L13_282 at 331.866 kb on - strand, within PfGW456L13_282 at 331.866 kb on - strand, within PfGW456L13_282 at 331.866 kb on - strand, within PfGW456L13_282 at 331.900 kb on + strand at 331.901 kb on - strand at 331.985 kb on + strand at 332.011 kb on + strand at 332.012 kb on - strand at 332.116 kb on + strand at 332.116 kb on + strand at 332.116 kb on + strand at 332.116 kb on + strand at 332.116 kb on + strand at 332.116 kb on + strand at 332.117 kb on - strand at 332.117 kb on - strand at 332.117 kb on - strand at 332.117 kb on - strand at 332.117 kb on - strand at 332.117 kb on - strand at 332.134 kb on + strand at 332.134 kb on + strand at 332.134 kb on + strand at 332.134 kb on + strand at 332.134 kb on + strand at 332.135 kb on - strand at 332.207 kb on + strand at 332.251 kb on + strand at 332.252 kb on - strand at 332.252 kb on - strand at 332.252 kb on - strand at 332.252 kb on - strand at 332.252 kb on - strand at 332.324 kb on - strand at 332.477 kb on + strand, within PfGW456L13_283 at 332.477 kb on + strand, within PfGW456L13_283 at 332.477 kb on + strand, within PfGW456L13_283 at 332.477 kb on + strand, within PfGW456L13_283 at 332.478 kb on - strand, within PfGW456L13_283 at 332.478 kb on - strand, within PfGW456L13_283 at 332.478 kb on - strand, within PfGW456L13_283 at 332.478 kb on - strand, within PfGW456L13_283 at 332.478 kb on - strand, within PfGW456L13_283 at 332.647 kb on + strand, within PfGW456L13_283 at 332.648 kb on - strand, within PfGW456L13_283 at 332.900 kb on + strand, within PfGW456L13_283 at 332.900 kb on + strand, within PfGW456L13_283 at 332.901 kb on - strand, within PfGW456L13_283 at 332.901 kb on - strand, within PfGW456L13_283 at 332.901 kb on - strand, within PfGW456L13_283 at 332.901 kb on - strand, within PfGW456L13_283 at 332.954 kb on + strand, within PfGW456L13_283 at 332.954 kb on + strand, within PfGW456L13_283 at 332.954 kb on + strand, within PfGW456L13_283 at 332.954 kb on + strand, within PfGW456L13_283 at 332.954 kb on + strand, within PfGW456L13_283 at 332.954 kb on + strand, within PfGW456L13_283 at 332.954 kb on + strand, within PfGW456L13_283 at 332.954 kb on + strand, within PfGW456L13_283 at 332.954 kb on + strand, within PfGW456L13_283 at 332.954 kb on + strand, within PfGW456L13_283 at 332.954 kb on + strand, within PfGW456L13_283 at 332.955 kb on - strand, within PfGW456L13_283 at 332.955 kb on - strand, within PfGW456L13_283 at 332.955 kb on - strand, within PfGW456L13_283 at 332.955 kb on - strand, within PfGW456L13_283 at 332.955 kb on - strand, within PfGW456L13_283 at 332.955 kb on - strand, within PfGW456L13_283 at 332.984 kb on - strand, within PfGW456L13_283 at 332.984 kb on - strand, within PfGW456L13_283 at 333.138 kb on + strand, within PfGW456L13_283 at 333.317 kb on - strand, within PfGW456L13_283 at 333.425 kb on + strand, within PfGW456L13_283 at 333.425 kb on + strand, within PfGW456L13_283 at 333.426 kb on - strand, within PfGW456L13_283 at 333.426 kb on - strand, within PfGW456L13_283 at 333.426 kb on - strand, within PfGW456L13_283 at 333.426 kb on - strand, within PfGW456L13_283 at 333.426 kb on - strand, within PfGW456L13_283 at 333.431 kb on + strand, within PfGW456L13_283 at 333.570 kb on - strand at 333.619 kb on - strand at 333.741 kb on + strand at 333.931 kb on - strand, within PfGW456L13_284 at 333.968 kb on - strand, within PfGW456L13_284 at 333.968 kb on - strand, within PfGW456L13_284 at 333.982 kb on + strand, within PfGW456L13_284 at 333.983 kb on - strand, within PfGW456L13_284 at 334.079 kb on - strand, within PfGW456L13_284 at 334.235 kb on + strand, within PfGW456L13_284 at 334.236 kb on - strand, within PfGW456L13_284 at 334.236 kb on - strand, within PfGW456L13_284 at 334.236 kb on - strand, within PfGW456L13_284 at 334.236 kb on - strand, within PfGW456L13_284 at 334.534 kb on - strand at 334.534 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 331,400 + PfGW456L13_282 0.70 -0.4 331,401 - PfGW456L13_282 0.70 -0.9 331,415 + PfGW456L13_282 0.71 +0.5 331,416 - PfGW456L13_282 0.71 -0.9 331,416 - PfGW456L13_282 0.71 +1.2 331,571 - PfGW456L13_282 0.77 +1.9 331,628 + PfGW456L13_282 0.80 -0.1 331,628 + PfGW456L13_282 0.80 +1.5 331,628 + PfGW456L13_282 0.80 -0.1 331,628 + PfGW456L13_282 0.80 +0.1 331,628 + PfGW456L13_282 0.80 -0.5 331,628 + PfGW456L13_282 0.80 +0.0 331,628 + PfGW456L13_282 0.80 -1.4 331,628 + PfGW456L13_282 0.80 +0.4 331,628 + PfGW456L13_282 0.80 +0.2 331,629 - PfGW456L13_282 0.80 -0.3 331,629 - PfGW456L13_282 0.80 -2.0 331,629 - PfGW456L13_282 0.80 -1.7 331,629 - PfGW456L13_282 0.80 +0.1 331,629 - PfGW456L13_282 0.80 +0.6 331,629 - PfGW456L13_282 0.80 -0.3 331,629 - PfGW456L13_282 0.80 -0.7 331,629 - PfGW456L13_282 0.80 -1.0 331,629 - PfGW456L13_282 0.80 -0.9 331,629 - PfGW456L13_282 0.80 -2.5 331,629 - PfGW456L13_282 0.80 -0.3 331,629 - PfGW456L13_282 0.80 +0.1 331,629 - PfGW456L13_282 0.80 +0.1 331,629 - PfGW456L13_282 0.80 -1.1 331,629 - PfGW456L13_282 0.80 -1.5 331,761 - PfGW456L13_282 0.85 -0.0 331,773 - PfGW456L13_282 0.86 -1.1 331,865 + PfGW456L13_282 0.90 -0.8 331,865 + PfGW456L13_282 0.90 -3.1 331,865 + PfGW456L13_282 0.90 +0.1 331,865 + PfGW456L13_282 0.90 -1.4 331,865 + PfGW456L13_282 0.90 -0.4 331,865 + PfGW456L13_282 0.90 -1.3 331,866 - PfGW456L13_282 0.90 +1.3 331,866 - PfGW456L13_282 0.90 -1.8 331,866 - PfGW456L13_282 0.90 -2.1 331,866 - PfGW456L13_282 0.90 +0.5 331,866 - PfGW456L13_282 0.90 -0.3 331,866 - PfGW456L13_282 0.90 +0.1 331,866 - PfGW456L13_282 0.90 +2.1 331,900 + -0.7 331,901 - -2.0 331,985 + +0.8 332,011 + +0.5 332,012 - -0.7 332,116 + +0.0 332,116 + -0.2 332,116 + +0.3 332,116 + +0.2 332,116 + -0.5 332,116 + +1.2 332,117 - -1.0 332,117 - +0.4 332,117 - +0.5 332,117 - -0.6 332,117 - -0.4 332,117 - +0.5 332,134 + -0.7 332,134 + +0.5 332,134 + +0.9 332,134 + +0.5 332,134 + -0.1 332,135 - +1.7 332,207 + -1.1 332,251 + -0.3 332,252 - -0.2 332,252 - +0.5 332,252 - -1.0 332,252 - -0.3 332,252 - +0.7 332,324 - +0.4 332,477 + PfGW456L13_283 0.11 -0.9 332,477 + PfGW456L13_283 0.11 +0.8 332,477 + PfGW456L13_283 0.11 -1.2 332,477 + PfGW456L13_283 0.11 -2.4 332,478 - PfGW456L13_283 0.12 -0.5 332,478 - PfGW456L13_283 0.12 -1.4 332,478 - PfGW456L13_283 0.12 -0.5 332,478 - PfGW456L13_283 0.12 -0.8 332,478 - PfGW456L13_283 0.12 -0.6 332,647 + PfGW456L13_283 0.25 -1.5 332,648 - PfGW456L13_283 0.25 -0.3 332,900 + PfGW456L13_283 0.45 +0.5 332,900 + PfGW456L13_283 0.45 -0.4 332,901 - PfGW456L13_283 0.45 -2.3 332,901 - PfGW456L13_283 0.45 -2.6 332,901 - PfGW456L13_283 0.45 -0.5 332,901 - PfGW456L13_283 0.45 -1.4 332,954 + PfGW456L13_283 0.49 +0.1 332,954 + PfGW456L13_283 0.49 -1.5 332,954 + PfGW456L13_283 0.49 -0.7 332,954 + PfGW456L13_283 0.49 +0.3 332,954 + PfGW456L13_283 0.49 +1.1 332,954 + PfGW456L13_283 0.49 -1.4 332,954 + PfGW456L13_283 0.49 +0.5 332,954 + PfGW456L13_283 0.49 -2.0 332,954 + PfGW456L13_283 0.49 +0.3 332,954 + PfGW456L13_283 0.49 -1.0 332,954 + PfGW456L13_283 0.49 -1.7 332,955 - PfGW456L13_283 0.49 +0.2 332,955 - PfGW456L13_283 0.49 -0.1 332,955 - PfGW456L13_283 0.49 -0.9 332,955 - PfGW456L13_283 0.49 -0.8 332,955 - PfGW456L13_283 0.49 +0.0 332,955 - PfGW456L13_283 0.49 -0.2 332,984 - PfGW456L13_283 0.51 -1.5 332,984 - PfGW456L13_283 0.51 -1.5 333,138 + PfGW456L13_283 0.64 -0.8 333,317 - PfGW456L13_283 0.78 -1.8 333,425 + PfGW456L13_283 0.86 -1.7 333,425 + PfGW456L13_283 0.86 -1.8 333,426 - PfGW456L13_283 0.86 -2.6 333,426 - PfGW456L13_283 0.86 -2.6 333,426 - PfGW456L13_283 0.86 -0.9 333,426 - PfGW456L13_283 0.86 -1.2 333,426 - PfGW456L13_283 0.86 -0.4 333,431 + PfGW456L13_283 0.87 -1.4 333,570 - +0.2 333,619 - +0.6 333,741 + -0.0 333,931 - PfGW456L13_284 0.19 +0.2 333,968 - PfGW456L13_284 0.23 +0.8 333,968 - PfGW456L13_284 0.23 +0.7 333,982 + PfGW456L13_284 0.25 -0.8 333,983 - PfGW456L13_284 0.25 -0.8 334,079 - PfGW456L13_284 0.37 +1.5 334,235 + PfGW456L13_284 0.57 +0.0 334,236 - PfGW456L13_284 0.57 +0.3 334,236 - PfGW456L13_284 0.57 -0.5 334,236 - PfGW456L13_284 0.57 -0.1 334,236 - PfGW456L13_284 0.57 -0.1 334,534 - -0.1 334,534 - +0.3
Or see this region's nucleotide sequence