Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_171 and PfGW456L13_172 are separated by 128 nucleotides PfGW456L13_172 and PfGW456L13_173 are separated by 135 nucleotides
PfGW456L13_171 - Phosphatidylserine decarboxylase (EC 4.1.1.65), at 195,436 to 196,296
_171
PfGW456L13_172 - Phosphoserine phosphatase (EC 3.1.3.3), at 196,425 to 197,639
_172
PfGW456L13_173 - HAMP domain protein, at 197,775 to 199,292
_173
Position (kb) 196
197
198 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 196.307 kb on + strand at 196.307 kb on + strand at 196.307 kb on + strand at 196.307 kb on + strand at 196.307 kb on + strand at 196.307 kb on + strand at 196.307 kb on + strand at 196.307 kb on + strand at 196.307 kb on + strand at 196.307 kb on + strand at 196.307 kb on + strand at 196.308 kb on - strand at 196.308 kb on - strand at 196.308 kb on - strand at 196.308 kb on - strand at 196.308 kb on - strand at 196.308 kb on - strand at 196.308 kb on - strand at 196.308 kb on - strand at 196.308 kb on - strand at 196.308 kb on - strand at 196.308 kb on - strand at 196.308 kb on - strand at 196.308 kb on - strand at 196.308 kb on - strand at 196.308 kb on - strand at 196.314 kb on - strand at 196.407 kb on + strand at 196.408 kb on - strand at 196.408 kb on - strand at 196.408 kb on - strand at 196.408 kb on - strand at 196.408 kb on - strand at 196.408 kb on - strand at 196.426 kb on + strand at 196.427 kb on - strand at 196.462 kb on + strand at 196.462 kb on + strand at 196.462 kb on + strand at 196.462 kb on + strand at 196.735 kb on + strand, within PfGW456L13_172 at 196.735 kb on + strand, within PfGW456L13_172 at 196.735 kb on + strand, within PfGW456L13_172 at 196.736 kb on - strand, within PfGW456L13_172 at 196.736 kb on - strand, within PfGW456L13_172 at 196.736 kb on - strand, within PfGW456L13_172 at 196.736 kb on - strand, within PfGW456L13_172 at 196.774 kb on + strand, within PfGW456L13_172 at 196.774 kb on + strand, within PfGW456L13_172 at 196.774 kb on + strand, within PfGW456L13_172 at 196.774 kb on + strand, within PfGW456L13_172 at 196.775 kb on - strand, within PfGW456L13_172 at 196.775 kb on - strand, within PfGW456L13_172 at 196.808 kb on - strand, within PfGW456L13_172 at 196.808 kb on - strand, within PfGW456L13_172 at 196.808 kb on - strand, within PfGW456L13_172 at 197.275 kb on + strand, within PfGW456L13_172 at 197.275 kb on + strand, within PfGW456L13_172 at 197.276 kb on - strand, within PfGW456L13_172 at 197.383 kb on + strand, within PfGW456L13_172 at 197.384 kb on - strand, within PfGW456L13_172 at 197.431 kb on + strand, within PfGW456L13_172 at 197.432 kb on - strand, within PfGW456L13_172 at 197.432 kb on - strand, within PfGW456L13_172 at 197.619 kb on + strand at 197.674 kb on + strand at 197.674 kb on + strand at 197.675 kb on - strand at 197.675 kb on - strand at 197.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 196,307 + -0.4 196,307 + -0.4 196,307 + +0.4 196,307 + +0.6 196,307 + -0.2 196,307 + +0.0 196,307 + -0.7 196,307 + +0.7 196,307 + -0.4 196,307 + -1.2 196,307 + +0.1 196,308 - +0.8 196,308 - +0.4 196,308 - +1.0 196,308 - +1.0 196,308 - +0.0 196,308 - +0.6 196,308 - -0.5 196,308 - -0.9 196,308 - -1.2 196,308 - -1.2 196,308 - +0.6 196,308 - +0.3 196,308 - +0.4 196,308 - +0.6 196,308 - -0.1 196,314 - -0.3 196,407 + -1.0 196,408 - +0.8 196,408 - +0.1 196,408 - -1.4 196,408 - -0.8 196,408 - +0.5 196,408 - +0.2 196,426 + +0.3 196,427 - -1.0 196,462 + -0.9 196,462 + -2.1 196,462 + -1.8 196,462 + +0.1 196,735 + PfGW456L13_172 0.26 -1.9 196,735 + PfGW456L13_172 0.26 -0.6 196,735 + PfGW456L13_172 0.26 -1.9 196,736 - PfGW456L13_172 0.26 -0.7 196,736 - PfGW456L13_172 0.26 -2.0 196,736 - PfGW456L13_172 0.26 -0.9 196,736 - PfGW456L13_172 0.26 -1.7 196,774 + PfGW456L13_172 0.29 -2.3 196,774 + PfGW456L13_172 0.29 -1.7 196,774 + PfGW456L13_172 0.29 -1.8 196,774 + PfGW456L13_172 0.29 -1.4 196,775 - PfGW456L13_172 0.29 -1.5 196,775 - PfGW456L13_172 0.29 -2.1 196,808 - PfGW456L13_172 0.32 -1.0 196,808 - PfGW456L13_172 0.32 -2.7 196,808 - PfGW456L13_172 0.32 -2.7 197,275 + PfGW456L13_172 0.70 -1.2 197,275 + PfGW456L13_172 0.70 -3.3 197,276 - PfGW456L13_172 0.70 -1.8 197,383 + PfGW456L13_172 0.79 -2.9 197,384 - PfGW456L13_172 0.79 -4.1 197,431 + PfGW456L13_172 0.83 -0.4 197,432 - PfGW456L13_172 0.83 -2.0 197,432 - PfGW456L13_172 0.83 -1.5 197,619 + -2.2 197,674 + +0.5 197,674 + -0.2 197,675 - +0.3 197,675 - +0.1 197,733 + -0.2
Or see this region's nucleotide sequence