Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_143 and PfGW456L13_144 overlap by 4 nucleotides PfGW456L13_144 and PfGW456L13_5158 are separated by 225 nucleotides PfGW456L13_5158 and PfGW456L13_5159 are separated by 170 nucleotides PfGW456L13_5159 and PfGW456L13_145 are separated by 276 nucleotides
PfGW456L13_143 - 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-), at 163,298 to 164,065
_143
PfGW456L13_144 - 3'-to-5' exoribonuclease RNase R, at 164,062 to 166,689
_144
PfGW456L13_5158 - tRNA-Leu-CAG, at 166,915 to 166,998
_5158
PfGW456L13_5159 - tRNA-Leu-CAG, at 167,169 to 167,252
_5159
PfGW456L13_145 - Ferric iron ABC transporter, iron-binding protein, at 167,529 to 168,539
_145
Position (kb) 164
165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2 at 163.142 kb on + strand at 163.143 kb on - strand at 163.154 kb on - strand at 163.182 kb on + strand at 163.183 kb on - strand at 163.237 kb on + strand at 163.237 kb on + strand at 163.237 kb on + strand at 163.238 kb on - strand at 163.238 kb on - strand at 163.250 kb on + strand at 163.250 kb on + strand at 163.426 kb on - strand, within PfGW456L13_143 at 163.512 kb on + strand, within PfGW456L13_143 at 163.513 kb on - strand, within PfGW456L13_143 at 163.513 kb on - strand, within PfGW456L13_143 at 163.865 kb on + strand, within PfGW456L13_143 at 163.865 kb on + strand, within PfGW456L13_143 at 163.865 kb on + strand, within PfGW456L13_143 at 163.865 kb on + strand, within PfGW456L13_143 at 163.866 kb on - strand, within PfGW456L13_143 at 164.027 kb on + strand at 164.027 kb on + strand at 164.027 kb on + strand at 164.028 kb on - strand at 164.028 kb on - strand at 164.028 kb on - strand at 164.036 kb on + strand at 164.036 kb on + strand at 164.036 kb on + strand at 164.036 kb on + strand at 164.036 kb on + strand at 164.036 kb on + strand at 164.036 kb on + strand at 164.037 kb on - strand at 164.037 kb on - strand at 164.037 kb on - strand at 164.037 kb on - strand at 164.037 kb on - strand at 164.037 kb on - strand at 164.037 kb on - strand at 164.037 kb on - strand at 164.043 kb on + strand at 164.043 kb on + strand at 164.043 kb on + strand at 164.043 kb on + strand at 164.044 kb on - strand at 164.044 kb on - strand at 164.044 kb on - strand at 164.077 kb on - strand at 164.134 kb on - strand at 164.317 kb on + strand at 164.317 kb on + strand at 164.317 kb on + strand at 164.318 kb on - strand at 164.577 kb on - strand, within PfGW456L13_144 at 164.577 kb on - strand, within PfGW456L13_144 at 164.579 kb on + strand, within PfGW456L13_144 at 164.621 kb on + strand, within PfGW456L13_144 at 164.621 kb on + strand, within PfGW456L13_144 at 164.621 kb on + strand, within PfGW456L13_144 at 164.621 kb on + strand, within PfGW456L13_144 at 164.625 kb on + strand, within PfGW456L13_144 at 164.626 kb on - strand, within PfGW456L13_144 at 164.731 kb on + strand, within PfGW456L13_144 at 164.731 kb on + strand, within PfGW456L13_144 at 164.731 kb on + strand, within PfGW456L13_144 at 164.731 kb on + strand, within PfGW456L13_144 at 164.732 kb on - strand, within PfGW456L13_144 at 164.732 kb on - strand, within PfGW456L13_144 at 164.732 kb on - strand, within PfGW456L13_144 at 164.954 kb on + strand, within PfGW456L13_144 at 165.376 kb on + strand, within PfGW456L13_144 at 165.447 kb on - strand, within PfGW456L13_144 at 165.513 kb on - strand, within PfGW456L13_144 at 166.028 kb on + strand, within PfGW456L13_144 at 166.028 kb on + strand, within PfGW456L13_144 at 166.029 kb on - strand, within PfGW456L13_144 at 166.451 kb on + strand at 166.451 kb on + strand at 166.452 kb on - strand at 166.452 kb on - strand at 166.452 kb on - strand at 166.452 kb on - strand at 166.469 kb on + strand at 166.470 kb on - strand at 166.470 kb on - strand at 166.470 kb on - strand at 166.470 kb on - strand at 166.470 kb on - strand at 166.710 kb on + strand at 166.710 kb on + strand at 166.712 kb on + strand at 166.731 kb on + strand at 166.737 kb on + strand at 166.760 kb on + strand at 166.760 kb on + strand at 166.760 kb on + strand at 166.763 kb on + strand at 166.763 kb on + strand at 166.763 kb on + strand at 166.763 kb on + strand at 166.763 kb on + strand at 166.763 kb on + strand at 166.774 kb on + strand at 166.774 kb on + strand at 166.774 kb on + strand at 166.774 kb on + strand at 166.874 kb on + strand at 167.018 kb on + strand at 167.084 kb on + strand at 167.085 kb on - strand at 167.130 kb on + strand at 167.131 kb on - strand at 167.350 kb on + strand at 167.350 kb on + strand at 167.350 kb on + strand at 167.351 kb on - strand at 167.351 kb on - strand at 167.377 kb on + strand at 167.377 kb on + strand at 167.377 kb on + strand at 167.377 kb on + strand at 167.377 kb on + strand at 167.377 kb on + strand at 167.377 kb on + strand at 167.377 kb on + strand at 167.377 kb on + strand at 167.377 kb on + strand at 167.377 kb on + strand at 167.378 kb on - strand at 167.378 kb on - strand at 167.378 kb on - strand at 167.378 kb on - strand at 167.378 kb on - strand at 167.378 kb on - strand at 167.378 kb on - strand at 167.378 kb on - strand at 167.453 kb on + strand at 167.543 kb on + strand at 167.543 kb on + strand at 167.544 kb on - strand at 167.634 kb on + strand, within PfGW456L13_145 at 167.634 kb on + strand, within PfGW456L13_145 at 167.634 kb on + strand, within PfGW456L13_145 at 167.635 kb on - strand, within PfGW456L13_145
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 163,142 + -0.0 163,143 - -0.5 163,154 - -0.1 163,182 + -0.4 163,183 - -0.1 163,237 + -0.7 163,237 + -0.1 163,237 + -0.4 163,238 - +0.9 163,238 - -0.2 163,250 + +0.8 163,250 + -0.7 163,426 - PfGW456L13_143 0.17 -2.0 163,512 + PfGW456L13_143 0.28 +0.3 163,513 - PfGW456L13_143 0.28 +0.4 163,513 - PfGW456L13_143 0.28 -1.4 163,865 + PfGW456L13_143 0.74 +0.1 163,865 + PfGW456L13_143 0.74 -0.1 163,865 + PfGW456L13_143 0.74 -0.8 163,865 + PfGW456L13_143 0.74 +0.7 163,866 - PfGW456L13_143 0.74 -0.5 164,027 + -0.8 164,027 + -0.5 164,027 + -1.1 164,028 - -0.1 164,028 - +0.6 164,028 - +0.0 164,036 + +0.4 164,036 + -0.0 164,036 + +0.2 164,036 + +1.9 164,036 + -0.4 164,036 + +0.2 164,036 + -0.6 164,037 - -1.1 164,037 - -1.3 164,037 - -0.1 164,037 - -1.3 164,037 - -0.1 164,037 - +0.9 164,037 - +0.1 164,037 - -0.9 164,043 + +0.5 164,043 + +0.0 164,043 + +0.0 164,043 + +1.1 164,044 - +0.4 164,044 - +0.5 164,044 - +0.9 164,077 - +0.1 164,134 - -1.2 164,317 + -0.8 164,317 + -0.3 164,317 + +0.8 164,318 - +0.4 164,577 - PfGW456L13_144 0.20 -2.7 164,577 - PfGW456L13_144 0.20 +0.1 164,579 + PfGW456L13_144 0.20 -1.9 164,621 + PfGW456L13_144 0.21 -1.9 164,621 + PfGW456L13_144 0.21 -1.8 164,621 + PfGW456L13_144 0.21 -0.2 164,621 + PfGW456L13_144 0.21 -0.4 164,625 + PfGW456L13_144 0.21 +0.5 164,626 - PfGW456L13_144 0.21 +2.4 164,731 + PfGW456L13_144 0.25 -0.5 164,731 + PfGW456L13_144 0.25 +0.3 164,731 + PfGW456L13_144 0.25 -0.2 164,731 + PfGW456L13_144 0.25 -1.6 164,732 - PfGW456L13_144 0.25 +0.1 164,732 - PfGW456L13_144 0.25 -1.0 164,732 - PfGW456L13_144 0.25 -1.4 164,954 + PfGW456L13_144 0.34 -0.8 165,376 + PfGW456L13_144 0.50 +0.4 165,447 - PfGW456L13_144 0.53 -2.1 165,513 - PfGW456L13_144 0.55 -1.1 166,028 + PfGW456L13_144 0.75 +1.4 166,028 + PfGW456L13_144 0.75 +0.1 166,029 - PfGW456L13_144 0.75 +0.1 166,451 + +0.1 166,451 + -0.9 166,452 - -1.4 166,452 - +0.8 166,452 - -2.1 166,452 - -1.8 166,469 + +0.8 166,470 - -1.2 166,470 - -1.8 166,470 - +0.2 166,470 - -1.4 166,470 - +0.6 166,710 + +0.8 166,710 + -0.3 166,712 + -1.2 166,731 + +0.0 166,737 + -2.3 166,760 + +0.1 166,760 + +1.3 166,760 + +0.0 166,763 + -0.4 166,763 + -0.5 166,763 + +0.1 166,763 + +0.1 166,763 + -0.4 166,763 + +0.2 166,774 + -0.7 166,774 + -1.1 166,774 + +0.5 166,774 + -0.7 166,874 + -0.3 167,018 + +0.2 167,084 + +0.0 167,085 - +0.2 167,130 + -1.2 167,131 - -1.5 167,350 + +0.3 167,350 + -0.2 167,350 + -0.1 167,351 - -1.3 167,351 - +2.4 167,377 + +1.5 167,377 + -0.2 167,377 + -0.0 167,377 + -0.4 167,377 + -0.5 167,377 + +0.7 167,377 + +0.3 167,377 + -1.3 167,377 + -0.4 167,377 + +0.4 167,377 + +1.8 167,378 - +1.1 167,378 - -0.9 167,378 - -0.0 167,378 - -1.5 167,378 - -0.2 167,378 - +0.7 167,378 - -0.4 167,378 - -0.3 167,453 + +0.1 167,543 + -0.7 167,543 + +0.8 167,544 - +0.3 167,634 + PfGW456L13_145 0.10 +0.5 167,634 + PfGW456L13_145 0.10 +0.3 167,634 + PfGW456L13_145 0.10 +0.1 167,635 - PfGW456L13_145 0.10 -0.2
Or see this region's nucleotide sequence