Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_487

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_486 and PfGW456L13_487 are separated by 68 nucleotidesPfGW456L13_487 and PfGW456L13_488 are separated by 266 nucleotidesPfGW456L13_488 and PfGW456L13_489 overlap by 4 nucleotides PfGW456L13_486 - Sulfate and thiosulfate binding protein CysP, at 556,774 to 557,787 _486 PfGW456L13_487 - FIG00956018: hypothetical protein, at 557,856 to 558,038 _487 PfGW456L13_488 - Mobile element protein, at 558,305 to 558,610 _488 PfGW456L13_489 - Mobile element protein, at 558,607 to 559,443 _489 Position (kb) 557 558 559Strain fitness (log2 ratio) -2 -1 0 1 2 3at 556.898 kb on + strand, within PfGW456L13_486at 556.898 kb on + strand, within PfGW456L13_486at 556.899 kb on - strand, within PfGW456L13_486at 556.899 kb on - strand, within PfGW456L13_486at 556.931 kb on + strand, within PfGW456L13_486at 556.932 kb on - strand, within PfGW456L13_486at 556.932 kb on - strand, within PfGW456L13_486at 556.932 kb on - strand, within PfGW456L13_486at 556.970 kb on + strand, within PfGW456L13_486at 556.970 kb on + strand, within PfGW456L13_486at 556.971 kb on - strand, within PfGW456L13_486at 556.971 kb on - strand, within PfGW456L13_486at 556.971 kb on - strand, within PfGW456L13_486at 556.971 kb on - strand, within PfGW456L13_486at 556.971 kb on - strandat 556.985 kb on + strand, within PfGW456L13_486at 556.985 kb on + strand, within PfGW456L13_486at 557.035 kb on + strand, within PfGW456L13_486at 557.149 kb on + strand, within PfGW456L13_486at 557.149 kb on + strand, within PfGW456L13_486at 557.149 kb on + strand, within PfGW456L13_486at 557.149 kb on + strand, within PfGW456L13_486at 557.149 kb on + strand, within PfGW456L13_486at 557.149 kb on + strand, within PfGW456L13_486at 557.149 kb on + strand, within PfGW456L13_486at 557.149 kb on + strand, within PfGW456L13_486at 557.150 kb on - strand, within PfGW456L13_486at 557.150 kb on - strand, within PfGW456L13_486at 557.150 kb on - strand, within PfGW456L13_486at 557.150 kb on - strand, within PfGW456L13_486at 557.150 kb on - strand, within PfGW456L13_486at 557.150 kb on - strand, within PfGW456L13_486at 557.150 kb on - strand, within PfGW456L13_486at 557.150 kb on - strand, within PfGW456L13_486at 557.178 kb on + strand, within PfGW456L13_486at 557.178 kb on + strand, within PfGW456L13_486at 557.179 kb on - strand, within PfGW456L13_486at 557.179 kb on - strand, within PfGW456L13_486at 557.240 kb on + strand, within PfGW456L13_486at 557.240 kb on + strand, within PfGW456L13_486at 557.241 kb on - strand, within PfGW456L13_486at 557.241 kb on - strand, within PfGW456L13_486at 557.241 kb on - strand, within PfGW456L13_486at 557.285 kb on + strand, within PfGW456L13_486at 557.285 kb on + strand, within PfGW456L13_486at 557.394 kb on + strand, within PfGW456L13_486at 557.395 kb on - strand, within PfGW456L13_486at 557.435 kb on + strand, within PfGW456L13_486at 557.435 kb on + strand, within PfGW456L13_486at 557.435 kb on + strand, within PfGW456L13_486at 557.435 kb on + strand, within PfGW456L13_486at 557.436 kb on - strand, within PfGW456L13_486at 557.436 kb on - strand, within PfGW456L13_486at 557.436 kb on - strand, within PfGW456L13_486at 557.436 kb on - strand, within PfGW456L13_486at 557.660 kb on + strand, within PfGW456L13_486at 557.660 kb on + strand, within PfGW456L13_486at 557.660 kb on + strand, within PfGW456L13_486at 557.661 kb on - strand, within PfGW456L13_486at 557.661 kb on - strand, within PfGW456L13_486at 557.661 kb on - strand, within PfGW456L13_486at 557.661 kb on - strand, within PfGW456L13_486at 557.661 kb on - strand, within PfGW456L13_486at 557.661 kb on - strand, within PfGW456L13_486at 557.661 kb on - strand, within PfGW456L13_486at 557.669 kb on + strand, within PfGW456L13_486at 557.669 kb on + strand, within PfGW456L13_486at 557.670 kb on - strand, within PfGW456L13_486at 557.670 kb on - strand, within PfGW456L13_486at 557.670 kb on - strand, within PfGW456L13_486at 557.690 kb on + strandat 557.691 kb on - strandat 557.711 kb on + strandat 557.712 kb on - strandat 557.712 kb on - strandat 557.712 kb on - strandat 557.712 kb on - strandat 557.712 kb on - strandat 557.829 kb on - strandat 557.829 kb on - strandat 558.021 kb on - strandat 558.038 kb on + strandat 558.038 kb on + strandat 558.039 kb on - strandat 558.039 kb on - strandat 558.039 kb on - strandat 558.103 kb on + strandat 558.103 kb on + strandat 558.103 kb on + strandat 558.104 kb on - strandat 558.106 kb on + strandat 558.106 kb on + strandat 558.106 kb on + strandat 558.106 kb on + strandat 558.106 kb on + strandat 558.106 kb on + strandat 558.106 kb on + strandat 558.106 kb on + strandat 558.107 kb on - strandat 558.107 kb on - strandat 558.107 kb on - strandat 558.107 kb on - strandat 558.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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556,898 + PfGW456L13_486 0.12 -1.3
556,898 + PfGW456L13_486 0.12 -0.8
556,899 - PfGW456L13_486 0.12 +0.5
556,899 - PfGW456L13_486 0.12 +0.9
556,931 + PfGW456L13_486 0.15 +0.5
556,932 - PfGW456L13_486 0.16 -1.2
556,932 - PfGW456L13_486 0.16 +0.1
556,932 - PfGW456L13_486 0.16 +0.3
556,970 + PfGW456L13_486 0.19 -0.3
556,970 + PfGW456L13_486 0.19 -0.1
556,971 - PfGW456L13_486 0.19 -0.6
556,971 - PfGW456L13_486 0.19 -0.0
556,971 - PfGW456L13_486 0.19 -0.3
556,971 - PfGW456L13_486 0.19 -0.7
556,971 - +1.1
556,985 + PfGW456L13_486 0.21 -0.3
556,985 + PfGW456L13_486 0.21 -2.3
557,035 + PfGW456L13_486 0.26 +0.1
557,149 + PfGW456L13_486 0.37 -1.0
557,149 + PfGW456L13_486 0.37 +0.5
557,149 + PfGW456L13_486 0.37 +0.8
557,149 + PfGW456L13_486 0.37 -1.6
557,149 + PfGW456L13_486 0.37 +0.8
557,149 + PfGW456L13_486 0.37 +0.1
557,149 + PfGW456L13_486 0.37 +1.5
557,149 + PfGW456L13_486 0.37 -1.3
557,150 - PfGW456L13_486 0.37 +0.2
557,150 - PfGW456L13_486 0.37 +0.3
557,150 - PfGW456L13_486 0.37 +0.0
557,150 - PfGW456L13_486 0.37 -1.7
557,150 - PfGW456L13_486 0.37 +0.2
557,150 - PfGW456L13_486 0.37 -0.4
557,150 - PfGW456L13_486 0.37 +0.1
557,150 - PfGW456L13_486 0.37 +3.6
557,178 + PfGW456L13_486 0.40 +0.7
557,178 + PfGW456L13_486 0.40 -0.5
557,179 - PfGW456L13_486 0.40 +0.5
557,179 - PfGW456L13_486 0.40 +0.8
557,240 + PfGW456L13_486 0.46 -1.1
557,240 + PfGW456L13_486 0.46 +1.4
557,241 - PfGW456L13_486 0.46 +0.4
557,241 - PfGW456L13_486 0.46 -0.2
557,241 - PfGW456L13_486 0.46 -1.3
557,285 + PfGW456L13_486 0.50 +0.0
557,285 + PfGW456L13_486 0.50 -1.5
557,394 + PfGW456L13_486 0.61 -1.7
557,395 - PfGW456L13_486 0.61 -1.1
557,435 + PfGW456L13_486 0.65 -1.2
557,435 + PfGW456L13_486 0.65 -1.2
557,435 + PfGW456L13_486 0.65 -0.9
557,435 + PfGW456L13_486 0.65 -0.7
557,436 - PfGW456L13_486 0.65 +0.5
557,436 - PfGW456L13_486 0.65 -0.7
557,436 - PfGW456L13_486 0.65 +0.4
557,436 - PfGW456L13_486 0.65 -1.0
557,660 + PfGW456L13_486 0.87 -0.7
557,660 + PfGW456L13_486 0.87 -0.3
557,660 + PfGW456L13_486 0.87 +0.4
557,661 - PfGW456L13_486 0.87 -0.4
557,661 - PfGW456L13_486 0.87 -1.0
557,661 - PfGW456L13_486 0.87 +0.0
557,661 - PfGW456L13_486 0.87 +0.4
557,661 - PfGW456L13_486 0.87 +0.4
557,661 - PfGW456L13_486 0.87 -0.3
557,661 - PfGW456L13_486 0.87 +0.8
557,669 + PfGW456L13_486 0.88 +0.8
557,669 + PfGW456L13_486 0.88 -1.8
557,670 - PfGW456L13_486 0.88 -0.0
557,670 - PfGW456L13_486 0.88 -0.3
557,670 - PfGW456L13_486 0.88 +0.3
557,690 + +0.1
557,691 - +0.1
557,711 + +0.6
557,712 - -1.1
557,712 - -0.1
557,712 - +0.8
557,712 - -2.3
557,712 - +0.5
557,829 - +0.4
557,829 - +0.4
558,021 - +0.6
558,038 + +1.0
558,038 + -0.8
558,039 - +0.2
558,039 - -1.4
558,039 - -0.7
558,103 + -1.7
558,103 + +0.5
558,103 + -1.7
558,104 - +0.6
558,106 + +0.5
558,106 + -0.5
558,106 + +0.0
558,106 + -0.5
558,106 + +0.5
558,106 + -2.6
558,106 + +0.4
558,106 + -1.0
558,107 - +1.8
558,107 - -0.4
558,107 - -0.9
558,107 - +1.0
558,251 - +2.3

Or see this region's nucleotide sequence