Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4868 and Psyr_4869 are separated by 428 nucleotides Psyr_4869 and Psyr_4870 are separated by 31 nucleotides
Psyr_4868: Psyr_4868 - glutamate--putrescine ligase, at 5,778,347 to 5,779,723
_4868
Psyr_4869: Psyr_4869 - transcriptional regulator, TetR family, at 5,780,152 to 5,780,826
_4869
Psyr_4870: Psyr_4870 - hypothetical protein, at 5,780,858 to 5,781,937
_4870
Position (kb) 5780
5781 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5779.156 kb on + strand, within Psyr_4868 at 5779.156 kb on + strand, within Psyr_4868 at 5779.156 kb on + strand, within Psyr_4868 at 5779.156 kb on + strand, within Psyr_4868 at 5779.157 kb on - strand, within Psyr_4868 at 5779.157 kb on - strand, within Psyr_4868 at 5779.157 kb on - strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.322 kb on + strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.323 kb on - strand, within Psyr_4868 at 5779.361 kb on - strand, within Psyr_4868 at 5779.401 kb on + strand, within Psyr_4868 at 5779.401 kb on + strand, within Psyr_4868 at 5779.401 kb on + strand, within Psyr_4868 at 5779.530 kb on - strand, within Psyr_4868 at 5779.610 kb on + strand at 5779.610 kb on + strand at 5779.610 kb on + strand at 5779.610 kb on + strand at 5779.610 kb on + strand at 5779.610 kb on + strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.611 kb on - strand at 5779.625 kb on + strand at 5779.625 kb on + strand at 5779.625 kb on + strand at 5779.625 kb on + strand at 5779.625 kb on + strand at 5779.625 kb on + strand at 5779.626 kb on - strand at 5779.648 kb on + strand at 5779.649 kb on - strand at 5779.649 kb on - strand at 5779.698 kb on - strand at 5779.706 kb on + strand at 5779.715 kb on - strand at 5779.843 kb on + strand at 5779.843 kb on + strand at 5779.843 kb on + strand at 5779.843 kb on + strand at 5779.844 kb on - strand at 5779.844 kb on - strand at 5779.929 kb on + strand at 5779.929 kb on + strand at 5779.929 kb on + strand at 5779.930 kb on - strand at 5779.930 kb on - strand at 5779.942 kb on - strand at 5779.959 kb on + strand at 5779.960 kb on - strand at 5779.960 kb on - strand at 5779.977 kb on + strand at 5779.978 kb on - strand at 5779.978 kb on - strand at 5779.986 kb on + strand at 5779.986 kb on + strand at 5779.987 kb on - strand at 5779.987 kb on - strand at 5780.065 kb on + strand at 5780.065 kb on + strand at 5780.065 kb on + strand at 5780.066 kb on - strand at 5780.066 kb on - strand at 5780.075 kb on + strand at 5780.075 kb on + strand at 5780.075 kb on + strand at 5780.075 kb on + strand at 5780.075 kb on + strand at 5780.076 kb on - strand at 5780.076 kb on - strand at 5780.076 kb on - strand at 5780.148 kb on + strand at 5780.148 kb on + strand at 5780.148 kb on + strand at 5780.148 kb on + strand at 5780.149 kb on - strand at 5780.149 kb on - strand at 5780.299 kb on + strand, within Psyr_4869 at 5780.300 kb on - strand, within Psyr_4869 at 5780.300 kb on - strand, within Psyr_4869 at 5780.300 kb on - strand, within Psyr_4869 at 5780.341 kb on + strand, within Psyr_4869 at 5780.497 kb on + strand, within Psyr_4869 at 5780.497 kb on + strand, within Psyr_4869 at 5780.497 kb on + strand, within Psyr_4869 at 5780.497 kb on + strand, within Psyr_4869 at 5780.497 kb on + strand, within Psyr_4869 at 5780.497 kb on + strand, within Psyr_4869 at 5780.497 kb on + strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.498 kb on - strand, within Psyr_4869 at 5780.651 kb on + strand, within Psyr_4869 at 5780.651 kb on + strand, within Psyr_4869 at 5780.652 kb on - strand, within Psyr_4869 at 5780.657 kb on + strand, within Psyr_4869 at 5780.657 kb on + strand, within Psyr_4869 at 5780.657 kb on + strand, within Psyr_4869 at 5780.657 kb on + strand, within Psyr_4869 at 5780.657 kb on + strand, within Psyr_4869 at 5780.657 kb on + strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.658 kb on - strand, within Psyr_4869 at 5780.692 kb on + strand, within Psyr_4869 at 5780.692 kb on + strand, within Psyr_4869 at 5780.692 kb on + strand, within Psyr_4869 at 5780.692 kb on + strand, within Psyr_4869 at 5780.693 kb on - strand, within Psyr_4869 at 5780.693 kb on - strand, within Psyr_4869 at 5780.693 kb on - strand, within Psyr_4869 at 5780.693 kb on - strand, within Psyr_4869 at 5780.767 kb on + strand at 5780.767 kb on + strand at 5780.767 kb on + strand at 5780.779 kb on + strand at 5780.779 kb on + strand at 5780.779 kb on + strand at 5780.779 kb on + strand at 5780.780 kb on - strand at 5780.780 kb on - strand at 5780.780 kb on - strand at 5780.857 kb on - strand at 5780.869 kb on + strand at 5780.870 kb on - strand at 5780.870 kb on - strand at 5780.873 kb on + strand at 5780.873 kb on + strand at 5780.874 kb on - strand at 5780.874 kb on - strand at 5780.899 kb on + strand at 5780.912 kb on + strand at 5780.930 kb on - strand at 5780.930 kb on - strand at 5780.950 kb on + strand at 5780.993 kb on + strand, within Psyr_4870 at 5780.994 kb on - strand, within Psyr_4870 at 5780.994 kb on - strand, within Psyr_4870 at 5781.010 kb on + strand, within Psyr_4870 at 5781.020 kb on + strand, within Psyr_4870 at 5781.032 kb on + strand, within Psyr_4870 at 5781.033 kb on - strand, within Psyr_4870 at 5781.049 kb on + strand, within Psyr_4870 at 5781.049 kb on + strand, within Psyr_4870 at 5781.050 kb on - strand, within Psyr_4870 at 5781.050 kb on - strand, within Psyr_4870 at 5781.050 kb on - strand, within Psyr_4870 at 5781.066 kb on + strand, within Psyr_4870 at 5781.142 kb on + strand, within Psyr_4870 at 5781.142 kb on + strand, within Psyr_4870 at 5781.142 kb on + strand, within Psyr_4870 at 5781.142 kb on + strand, within Psyr_4870 at 5781.142 kb on + strand, within Psyr_4870 at 5781.143 kb on - strand, within Psyr_4870 at 5781.143 kb on - strand, within Psyr_4870 at 5781.143 kb on - strand, within Psyr_4870 at 5781.143 kb on - strand, within Psyr_4870 at 5781.144 kb on + strand, within Psyr_4870 at 5781.144 kb on + strand, within Psyr_4870 at 5781.145 kb on - strand, within Psyr_4870 at 5781.145 kb on - strand, within Psyr_4870 at 5781.181 kb on + strand, within Psyr_4870 at 5781.187 kb on + strand, within Psyr_4870 at 5781.188 kb on - strand, within Psyr_4870 at 5781.336 kb on - strand, within Psyr_4870 at 5781.377 kb on + strand, within Psyr_4870 at 5781.378 kb on - strand, within Psyr_4870 at 5781.392 kb on + strand, within Psyr_4870 at 5781.401 kb on - strand, within Psyr_4870 at 5781.401 kb on - strand, within Psyr_4870 at 5781.402 kb on + strand, within Psyr_4870 at 5781.403 kb on - strand, within Psyr_4870 at 5781.403 kb on - strand, within Psyr_4870 at 5781.403 kb on - strand, within Psyr_4870 at 5781.460 kb on - strand, within Psyr_4870 at 5781.529 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.559 kb on - strand, within Psyr_4870 at 5781.559 kb on - strand, within Psyr_4870 at 5781.648 kb on + strand, within Psyr_4870 at 5781.649 kb on - strand, within Psyr_4870 at 5781.762 kb on - strand, within Psyr_4870
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 5,779,156 + Psyr_4868 0.59 +2.0 5,779,156 + Psyr_4868 0.59 -0.4 5,779,156 + Psyr_4868 0.59 +2.2 5,779,156 + Psyr_4868 0.59 +0.5 5,779,157 - Psyr_4868 0.59 -0.6 5,779,157 - Psyr_4868 0.59 +0.4 5,779,157 - Psyr_4868 0.59 -0.2 5,779,322 + Psyr_4868 0.71 -0.2 5,779,322 + Psyr_4868 0.71 -2.9 5,779,322 + Psyr_4868 0.71 +1.9 5,779,322 + Psyr_4868 0.71 +1.0 5,779,322 + Psyr_4868 0.71 -1.1 5,779,322 + Psyr_4868 0.71 +1.6 5,779,322 + Psyr_4868 0.71 -0.5 5,779,322 + Psyr_4868 0.71 +0.7 5,779,322 + Psyr_4868 0.71 +1.9 5,779,322 + Psyr_4868 0.71 -1.2 5,779,323 - Psyr_4868 0.71 -1.5 5,779,323 - Psyr_4868 0.71 -0.9 5,779,323 - Psyr_4868 0.71 +1.7 5,779,323 - Psyr_4868 0.71 -2.2 5,779,323 - Psyr_4868 0.71 +1.5 5,779,323 - Psyr_4868 0.71 +0.4 5,779,323 - Psyr_4868 0.71 -1.5 5,779,323 - Psyr_4868 0.71 -0.8 5,779,323 - Psyr_4868 0.71 -1.8 5,779,323 - Psyr_4868 0.71 +5.0 5,779,323 - Psyr_4868 0.71 +1.1 5,779,323 - Psyr_4868 0.71 -1.3 5,779,323 - Psyr_4868 0.71 +0.4 5,779,323 - Psyr_4868 0.71 -1.8 5,779,323 - Psyr_4868 0.71 -2.6 5,779,361 - Psyr_4868 0.74 +0.4 5,779,401 + Psyr_4868 0.77 -1.3 5,779,401 + Psyr_4868 0.77 -0.4 5,779,401 + Psyr_4868 0.77 -1.8 5,779,530 - Psyr_4868 0.86 -2.5 5,779,610 + -1.5 5,779,610 + +1.4 5,779,610 + +2.3 5,779,610 + -2.1 5,779,610 + -2.2 5,779,610 + -0.7 5,779,611 - +1.2 5,779,611 - -0.8 5,779,611 - +0.3 5,779,611 - +0.6 5,779,611 - +1.3 5,779,611 - -0.7 5,779,611 - +1.4 5,779,611 - +0.4 5,779,611 - -0.8 5,779,611 - -2.4 5,779,611 - +1.7 5,779,625 + -2.1 5,779,625 + +2.2 5,779,625 + -1.6 5,779,625 + -1.0 5,779,625 + -2.2 5,779,625 + +2.5 5,779,626 - +1.2 5,779,648 + +1.4 5,779,649 - -0.7 5,779,649 - +2.3 5,779,698 - -0.9 5,779,706 + -1.0 5,779,715 - +1.4 5,779,843 + -1.8 5,779,843 + -0.5 5,779,843 + -2.3 5,779,843 + -1.1 5,779,844 - +3.4 5,779,844 - +1.7 5,779,929 + +3.5 5,779,929 + +1.8 5,779,929 + -2.6 5,779,930 - +2.1 5,779,930 - +0.3 5,779,942 - -1.8 5,779,959 + -0.2 5,779,960 - -0.6 5,779,960 - +2.1 5,779,977 + -0.8 5,779,978 - -2.6 5,779,978 - +0.0 5,779,986 + -0.4 5,779,986 + +2.4 5,779,987 - -1.8 5,779,987 - -0.7 5,780,065 + -0.8 5,780,065 + -2.0 5,780,065 + +2.7 5,780,066 - -3.1 5,780,066 - -1.9 5,780,075 + -2.2 5,780,075 + -1.9 5,780,075 + +0.8 5,780,075 + -0.4 5,780,075 + -1.8 5,780,076 - +0.3 5,780,076 - +1.1 5,780,076 - +2.3 5,780,148 + -0.2 5,780,148 + +1.1 5,780,148 + +1.8 5,780,148 + -2.7 5,780,149 - -0.2 5,780,149 - -2.0 5,780,299 + Psyr_4869 0.22 -1.5 5,780,300 - Psyr_4869 0.22 +1.2 5,780,300 - Psyr_4869 0.22 -1.5 5,780,300 - Psyr_4869 0.22 -1.0 5,780,341 + Psyr_4869 0.28 -1.2 5,780,497 + Psyr_4869 0.51 -1.3 5,780,497 + Psyr_4869 0.51 -1.0 5,780,497 + Psyr_4869 0.51 -1.8 5,780,497 + Psyr_4869 0.51 -1.1 5,780,497 + Psyr_4869 0.51 -1.0 5,780,497 + Psyr_4869 0.51 -0.3 5,780,497 + Psyr_4869 0.51 -0.3 5,780,498 - Psyr_4869 0.51 -0.6 5,780,498 - Psyr_4869 0.51 +0.4 5,780,498 - Psyr_4869 0.51 -2.3 5,780,498 - Psyr_4869 0.51 -2.3 5,780,498 - Psyr_4869 0.51 -0.5 5,780,498 - Psyr_4869 0.51 +0.4 5,780,498 - Psyr_4869 0.51 +3.4 5,780,498 - Psyr_4869 0.51 +0.8 5,780,651 + Psyr_4869 0.74 -0.2 5,780,651 + Psyr_4869 0.74 -1.1 5,780,652 - Psyr_4869 0.74 +3.7 5,780,657 + Psyr_4869 0.75 +0.2 5,780,657 + Psyr_4869 0.75 -0.5 5,780,657 + Psyr_4869 0.75 +2.5 5,780,657 + Psyr_4869 0.75 +2.4 5,780,657 + Psyr_4869 0.75 -0.6 5,780,657 + Psyr_4869 0.75 +1.4 5,780,658 - Psyr_4869 0.75 +0.9 5,780,658 - Psyr_4869 0.75 +0.1 5,780,658 - Psyr_4869 0.75 -1.2 5,780,658 - Psyr_4869 0.75 -3.5 5,780,658 - Psyr_4869 0.75 -1.2 5,780,658 - Psyr_4869 0.75 -0.8 5,780,658 - Psyr_4869 0.75 -0.6 5,780,658 - Psyr_4869 0.75 -0.9 5,780,692 + Psyr_4869 0.80 +0.5 5,780,692 + Psyr_4869 0.80 +0.8 5,780,692 + Psyr_4869 0.80 -1.3 5,780,692 + Psyr_4869 0.80 +0.2 5,780,693 - Psyr_4869 0.80 -1.8 5,780,693 - Psyr_4869 0.80 -0.3 5,780,693 - Psyr_4869 0.80 -1.1 5,780,693 - Psyr_4869 0.80 +0.2 5,780,767 + -1.3 5,780,767 + +2.3 5,780,767 + +1.5 5,780,779 + +4.6 5,780,779 + -1.9 5,780,779 + -3.1 5,780,779 + +3.3 5,780,780 - -0.4 5,780,780 - -0.8 5,780,780 - +2.3 5,780,857 - -1.0 5,780,869 + +0.9 5,780,870 - -1.3 5,780,870 - -2.3 5,780,873 + -0.8 5,780,873 + -2.3 5,780,874 - -0.1 5,780,874 - -2.1 5,780,899 + +0.9 5,780,912 + -0.5 5,780,930 - -1.0 5,780,930 - -0.5 5,780,950 + -0.8 5,780,993 + Psyr_4870 0.12 +1.2 5,780,994 - Psyr_4870 0.13 -1.8 5,780,994 - Psyr_4870 0.13 -1.6 5,781,010 + Psyr_4870 0.14 +0.3 5,781,020 + Psyr_4870 0.15 -3.4 5,781,032 + Psyr_4870 0.16 +2.9 5,781,033 - Psyr_4870 0.16 -0.7 5,781,049 + Psyr_4870 0.18 -1.2 5,781,049 + Psyr_4870 0.18 +2.0 5,781,050 - Psyr_4870 0.18 -1.4 5,781,050 - Psyr_4870 0.18 -0.2 5,781,050 - Psyr_4870 0.18 -0.5 5,781,066 + Psyr_4870 0.19 -1.2 5,781,142 + Psyr_4870 0.26 +0.8 5,781,142 + Psyr_4870 0.26 -2.9 5,781,142 + Psyr_4870 0.26 +0.2 5,781,142 + Psyr_4870 0.26 +1.6 5,781,142 + Psyr_4870 0.26 +0.2 5,781,143 - Psyr_4870 0.26 +0.2 5,781,143 - Psyr_4870 0.26 -1.3 5,781,143 - Psyr_4870 0.26 -0.3 5,781,143 - Psyr_4870 0.26 -1.0 5,781,144 + Psyr_4870 0.26 +0.2 5,781,144 + Psyr_4870 0.26 +2.0 5,781,145 - Psyr_4870 0.27 -0.0 5,781,145 - Psyr_4870 0.27 -1.1 5,781,181 + Psyr_4870 0.30 +0.3 5,781,187 + Psyr_4870 0.30 -2.5 5,781,188 - Psyr_4870 0.31 -0.4 5,781,336 - Psyr_4870 0.44 -2.1 5,781,377 + Psyr_4870 0.48 -0.3 5,781,378 - Psyr_4870 0.48 +0.7 5,781,392 + Psyr_4870 0.49 -1.0 5,781,401 - Psyr_4870 0.50 +1.3 5,781,401 - Psyr_4870 0.50 +3.7 5,781,402 + Psyr_4870 0.50 -0.4 5,781,403 - Psyr_4870 0.50 +1.2 5,781,403 - Psyr_4870 0.50 -2.1 5,781,403 - Psyr_4870 0.50 +0.2 5,781,460 - Psyr_4870 0.56 +1.2 5,781,529 + Psyr_4870 0.62 +0.2 5,781,531 + Psyr_4870 0.62 +1.5 5,781,531 + Psyr_4870 0.62 +0.8 5,781,531 + Psyr_4870 0.62 -1.2 5,781,531 + Psyr_4870 0.62 -2.7 5,781,531 + Psyr_4870 0.62 -1.5 5,781,559 - Psyr_4870 0.65 -0.9 5,781,559 - Psyr_4870 0.65 -3.1 5,781,648 + Psyr_4870 0.73 +0.8 5,781,649 - Psyr_4870 0.73 -0.7 5,781,762 - Psyr_4870 0.84 +2.8
Or see this region's nucleotide sequence