Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2298

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2296 and PfGW456L13_2297 overlap by 25 nucleotidesPfGW456L13_2297 and PfGW456L13_2298 overlap by 1 nucleotides PfGW456L13_2296 - Thiol:disulfide interchange protein DsbG precursor, at 2,522,539 to 2,523,306 _2296 PfGW456L13_2297 - Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase, at 2,523,282 to 2,524,136 _2297 PfGW456L13_2298 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 2,524,136 to 2,525,872 _2298 Position (kb) 2524 2525 2526Strain fitness (log2 ratio) -2 -1 0 1 2at 2523.422 kb on - strand, within PfGW456L13_2297at 2523.422 kb on - strand, within PfGW456L13_2297at 2523.422 kb on - strand, within PfGW456L13_2297at 2523.431 kb on + strand, within PfGW456L13_2297at 2523.431 kb on + strand, within PfGW456L13_2297at 2523.676 kb on + strand, within PfGW456L13_2297at 2523.749 kb on - strand, within PfGW456L13_2297at 2523.937 kb on + strand, within PfGW456L13_2297at 2523.937 kb on + strand, within PfGW456L13_2297at 2523.938 kb on - strand, within PfGW456L13_2297at 2523.949 kb on + strand, within PfGW456L13_2297at 2524.178 kb on - strandat 2524.178 kb on - strandat 2524.242 kb on - strandat 2524.414 kb on - strand, within PfGW456L13_2298at 2524.417 kb on - strand, within PfGW456L13_2298at 2524.944 kb on + strand, within PfGW456L13_2298at 2524.945 kb on - strand, within PfGW456L13_2298at 2524.945 kb on - strand, within PfGW456L13_2298at 2524.945 kb on - strand, within PfGW456L13_2298at 2524.945 kb on - strand, within PfGW456L13_2298at 2525.227 kb on - strand, within PfGW456L13_2298at 2525.227 kb on - strand, within PfGW456L13_2298at 2525.227 kb on - strand, within PfGW456L13_2298at 2525.247 kb on - strand, within PfGW456L13_2298at 2525.251 kb on - strand, within PfGW456L13_2298at 2525.251 kb on - strand, within PfGW456L13_2298at 2525.251 kb on - strand, within PfGW456L13_2298at 2525.251 kb on - strand, within PfGW456L13_2298at 2525.251 kb on - strand, within PfGW456L13_2298at 2525.251 kb on - strand, within PfGW456L13_2298at 2525.251 kb on - strand, within PfGW456L13_2298at 2525.251 kb on - strand, within PfGW456L13_2298at 2525.251 kb on - strand, within PfGW456L13_2298at 2525.251 kb on - strand, within PfGW456L13_2298at 2525.590 kb on - strand, within PfGW456L13_2298at 2525.698 kb on - strand, within PfGW456L13_2298at 2525.698 kb on - strand, within PfGW456L13_2298at 2525.698 kb on - strand, within PfGW456L13_2298at 2525.698 kb on - strand, within PfGW456L13_2298at 2525.722 kb on - strandat 2525.722 kb on - strandat 2525.722 kb on - strandat 2525.895 kb on - strandat 2526.033 kb on + strandat 2526.033 kb on + strandat 2526.034 kb on - strandat 2526.045 kb on - strandat 2526.088 kb on + strandat 2526.199 kb on + strandat 2526.199 kb on + strandat 2526.199 kb on + strandat 2526.201 kb on + strandat 2526.222 kb on - strandat 2526.223 kb on + strandat 2526.223 kb on + strandat 2526.223 kb on + strandat 2526.224 kb on - strandat 2526.224 kb on - strandat 2526.273 kb on + strandat 2526.352 kb on + strandat 2526.353 kb on - strandat 2526.353 kb on - strandat 2526.353 kb on - strandat 2526.353 kb on - strandat 2526.366 kb on + strandat 2526.374 kb on + strandat 2526.374 kb on + strandat 2526.374 kb on + strandat 2526.374 kb on + strandat 2526.375 kb on - strandat 2526.375 kb on - strandat 2526.375 kb on - strandat 2526.375 kb on - strandat 2526.416 kb on + strandat 2526.417 kb on - strandat 2526.446 kb on + strandat 2526.447 kb on - strandat 2526.486 kb on - strandat 2526.487 kb on + strandat 2526.527 kb on - strandat 2526.530 kb on - strandat 2526.584 kb on + strandat 2526.584 kb on + strandat 2526.584 kb on + strandat 2526.585 kb on - strandat 2526.585 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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2,523,422 - PfGW456L13_2297 0.16 +1.2
2,523,422 - PfGW456L13_2297 0.16 -1.0
2,523,422 - PfGW456L13_2297 0.16 -0.0
2,523,431 + PfGW456L13_2297 0.17 -0.1
2,523,431 + PfGW456L13_2297 0.17 -1.9
2,523,676 + PfGW456L13_2297 0.46 -1.1
2,523,749 - PfGW456L13_2297 0.55 -1.6
2,523,937 + PfGW456L13_2297 0.77 +0.6
2,523,937 + PfGW456L13_2297 0.77 -0.8
2,523,938 - PfGW456L13_2297 0.77 -1.0
2,523,949 + PfGW456L13_2297 0.78 -1.4
2,524,178 - +1.4
2,524,178 - +0.7
2,524,242 - +1.8
2,524,414 - PfGW456L13_2298 0.16 +0.0
2,524,417 - PfGW456L13_2298 0.16 -0.3
2,524,944 + PfGW456L13_2298 0.47 +0.2
2,524,945 - PfGW456L13_2298 0.47 +2.0
2,524,945 - PfGW456L13_2298 0.47 -0.3
2,524,945 - PfGW456L13_2298 0.47 +0.9
2,524,945 - PfGW456L13_2298 0.47 +0.3
2,525,227 - PfGW456L13_2298 0.63 +0.6
2,525,227 - PfGW456L13_2298 0.63 -0.6
2,525,227 - PfGW456L13_2298 0.63 +0.2
2,525,247 - PfGW456L13_2298 0.64 -0.3
2,525,251 - PfGW456L13_2298 0.64 -0.2
2,525,251 - PfGW456L13_2298 0.64 -0.5
2,525,251 - PfGW456L13_2298 0.64 +1.7
2,525,251 - PfGW456L13_2298 0.64 -0.4
2,525,251 - PfGW456L13_2298 0.64 -0.4
2,525,251 - PfGW456L13_2298 0.64 -0.7
2,525,251 - PfGW456L13_2298 0.64 +0.2
2,525,251 - PfGW456L13_2298 0.64 -0.8
2,525,251 - PfGW456L13_2298 0.64 -1.1
2,525,251 - PfGW456L13_2298 0.64 -1.5
2,525,590 - PfGW456L13_2298 0.84 +1.6
2,525,698 - PfGW456L13_2298 0.90 -0.0
2,525,698 - PfGW456L13_2298 0.90 +1.0
2,525,698 - PfGW456L13_2298 0.90 -0.9
2,525,698 - PfGW456L13_2298 0.90 -0.4
2,525,722 - -1.0
2,525,722 - +0.3
2,525,722 - +1.2
2,525,895 - +0.0
2,526,033 + -2.4
2,526,033 + +0.7
2,526,034 - -0.9
2,526,045 - -0.6
2,526,088 + -1.1
2,526,199 + -1.8
2,526,199 + +1.6
2,526,199 + -1.6
2,526,201 + -0.9
2,526,222 - +0.8
2,526,223 + -1.1
2,526,223 + -0.5
2,526,223 + +0.2
2,526,224 - +0.1
2,526,224 - -0.4
2,526,273 + -0.6
2,526,352 + +0.9
2,526,353 - +0.2
2,526,353 - +1.1
2,526,353 - -0.2
2,526,353 - -0.1
2,526,366 + -2.1
2,526,374 + -1.4
2,526,374 + +0.9
2,526,374 + +0.0
2,526,374 + -1.8
2,526,375 - +1.0
2,526,375 - -0.2
2,526,375 - -0.4
2,526,375 - +0.9
2,526,416 + +0.8
2,526,417 - -0.6
2,526,446 + -0.9
2,526,447 - +0.2
2,526,486 - -0.2
2,526,487 + +0.9
2,526,527 - -0.2
2,526,530 - -0.1
2,526,584 + +1.4
2,526,584 + -0.9
2,526,584 + -1.2
2,526,585 - +0.4
2,526,585 - +0.1

Or see this region's nucleotide sequence