Experiment: Sisomicin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20715 and HSERO_RS20720 are separated by 4 nucleotides HSERO_RS20720 and HSERO_RS20725 overlap by 4 nucleotides HSERO_RS20725 and HSERO_RS20730 are separated by 21 nucleotides
HSERO_RS20715: HSERO_RS20715 - cell division protein FtsY, at 4,747,817 to 4,748,782
_RS20715
HSERO_RS20720: HSERO_RS20720 - GMP synthase, at 4,748,787 to 4,749,479
_RS20720
HSERO_RS20725: HSERO_RS20725 - permease, at 4,749,476 to 4,750,399
_RS20725
HSERO_RS20730: HSERO_RS20730 - hypothetical protein, at 4,750,421 to 4,751,362
_RS20730
Position (kb) 4749
4750
4751 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4748.853 kb on - strand at 4748.926 kb on - strand, within HSERO_RS20720 at 4748.997 kb on - strand, within HSERO_RS20720 at 4749.152 kb on + strand, within HSERO_RS20720 at 4749.152 kb on + strand, within HSERO_RS20720 at 4749.160 kb on - strand, within HSERO_RS20720 at 4749.165 kb on - strand, within HSERO_RS20720 at 4749.178 kb on - strand, within HSERO_RS20720 at 4749.242 kb on + strand, within HSERO_RS20720 at 4749.293 kb on - strand, within HSERO_RS20720 at 4749.340 kb on + strand, within HSERO_RS20720 at 4749.353 kb on - strand, within HSERO_RS20720 at 4749.592 kb on - strand, within HSERO_RS20725 at 4749.592 kb on - strand, within HSERO_RS20725 at 4749.616 kb on - strand, within HSERO_RS20725 at 4749.799 kb on + strand, within HSERO_RS20725 at 4749.858 kb on + strand, within HSERO_RS20725 at 4749.866 kb on - strand, within HSERO_RS20725 at 4749.906 kb on + strand, within HSERO_RS20725 at 4749.914 kb on - strand, within HSERO_RS20725 at 4750.040 kb on - strand, within HSERO_RS20725 at 4750.066 kb on + strand, within HSERO_RS20725 at 4750.074 kb on - strand, within HSERO_RS20725 at 4750.116 kb on - strand, within HSERO_RS20725 at 4750.232 kb on + strand, within HSERO_RS20725 at 4750.359 kb on - strand at 4750.477 kb on + strand at 4750.477 kb on + strand at 4750.637 kb on + strand, within HSERO_RS20730 at 4750.766 kb on - strand, within HSERO_RS20730 at 4750.817 kb on - strand, within HSERO_RS20730 at 4750.817 kb on - strand, within HSERO_RS20730 at 4750.850 kb on + strand, within HSERO_RS20730 at 4750.850 kb on + strand, within HSERO_RS20730 at 4750.891 kb on - strand, within HSERO_RS20730 at 4750.957 kb on - strand, within HSERO_RS20730 at 4750.973 kb on + strand, within HSERO_RS20730 at 4751.068 kb on + strand, within HSERO_RS20730 at 4751.229 kb on - strand, within HSERO_RS20730 at 4751.297 kb on + strand at 4751.388 kb on + strand at 4751.388 kb on + strand at 4751.388 kb on + strand at 4751.396 kb on - strand at 4751.396 kb on - strand at 4751.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.125 mg/ml remove 4,748,853 - +0.0 4,748,926 - HSERO_RS20720 0.20 -2.2 4,748,997 - HSERO_RS20720 0.30 -1.0 4,749,152 + HSERO_RS20720 0.53 -2.6 4,749,152 + HSERO_RS20720 0.53 -2.0 4,749,160 - HSERO_RS20720 0.54 -1.8 4,749,165 - HSERO_RS20720 0.55 -2.8 4,749,178 - HSERO_RS20720 0.56 +0.8 4,749,242 + HSERO_RS20720 0.66 -0.0 4,749,293 - HSERO_RS20720 0.73 -2.3 4,749,340 + HSERO_RS20720 0.80 +0.0 4,749,353 - HSERO_RS20720 0.82 -0.2 4,749,592 - HSERO_RS20725 0.13 -0.7 4,749,592 - HSERO_RS20725 0.13 -1.3 4,749,616 - HSERO_RS20725 0.15 -1.4 4,749,799 + HSERO_RS20725 0.35 -2.7 4,749,858 + HSERO_RS20725 0.41 +0.1 4,749,866 - HSERO_RS20725 0.42 -0.1 4,749,906 + HSERO_RS20725 0.47 -3.4 4,749,914 - HSERO_RS20725 0.47 -0.9 4,750,040 - HSERO_RS20725 0.61 -3.2 4,750,066 + HSERO_RS20725 0.64 -2.2 4,750,074 - HSERO_RS20725 0.65 -2.9 4,750,116 - HSERO_RS20725 0.69 -0.9 4,750,232 + HSERO_RS20725 0.82 -2.1 4,750,359 - -0.9 4,750,477 + +0.7 4,750,477 + +0.7 4,750,637 + HSERO_RS20730 0.23 +0.7 4,750,766 - HSERO_RS20730 0.37 +0.2 4,750,817 - HSERO_RS20730 0.42 +0.4 4,750,817 - HSERO_RS20730 0.42 +0.2 4,750,850 + HSERO_RS20730 0.46 +0.7 4,750,850 + HSERO_RS20730 0.46 +0.8 4,750,891 - HSERO_RS20730 0.50 +1.0 4,750,957 - HSERO_RS20730 0.57 -0.7 4,750,973 + HSERO_RS20730 0.59 -2.0 4,751,068 + HSERO_RS20730 0.69 -2.5 4,751,229 - HSERO_RS20730 0.86 -1.0 4,751,297 + +0.3 4,751,388 + -0.9 4,751,388 + +0.7 4,751,388 + -2.1 4,751,396 - -1.1 4,751,396 - -0.9 4,751,396 - -0.3
Or see this region's nucleotide sequence