Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06205

Experiment: R2A pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH7
1,330,052	+		LRK54_RS06195	0.54	-0.3
1,330,052	+		LRK54_RS06195	0.54	+0.2
1,330,053	-		LRK54_RS06195	0.54	+0.1
1,330,053	-		LRK54_RS06195	0.54	-1.6
1,330,197	-		LRK54_RS06195	0.70	-0.4
1,330,205	+		LRK54_RS06195	0.71	-0.6
1,330,205	+		LRK54_RS06195	0.71	-0.8
1,330,205	+		LRK54_RS06195	0.71	+0.1
1,330,206	-		LRK54_RS06195	0.71	-0.1
1,330,206	-		LRK54_RS06195	0.71	+0.9
1,330,206	-		LRK54_RS06195	0.71	-0.8
1,330,249	+		LRK54_RS06195	0.75	-0.5
1,330,249	+		LRK54_RS06195	0.75	-1.8
1,330,249	+		LRK54_RS06195	0.75	-1.2
1,330,249	+		LRK54_RS06195	0.75	+0.0
1,330,249	+		LRK54_RS06195	0.75	-0.5
1,330,249	+		LRK54_RS06195	0.75	-0.5
1,330,249	+		LRK54_RS06195	0.75	+0.5
1,330,249	+		LRK54_RS06195	0.75	+0.5
1,330,249	+		LRK54_RS06195	0.75	+1.1
1,330,249	+		LRK54_RS06195	0.75	+0.5
1,330,249	+		LRK54_RS06195	0.75	-1.2
1,330,249	+		LRK54_RS06195	0.75	-2.3
1,330,249	+		LRK54_RS06195	0.75	-0.6
1,330,250	-		LRK54_RS06195	0.75	-0.1
1,330,250	-		LRK54_RS06195	0.75	-0.8
1,330,250	-		LRK54_RS06195	0.75	-0.3
1,330,250	-		LRK54_RS06195	0.75	+2.1
1,330,250	-		LRK54_RS06195	0.75	-0.2
1,330,250	-		LRK54_RS06195	0.75	-0.2
1,330,250	-		LRK54_RS06195	0.75	-0.5
1,330,250	-		LRK54_RS06195	0.75	-0.8
1,330,250	-		LRK54_RS06195	0.75	+0.1
1,330,250	-		LRK54_RS06195	0.75	+0.4
1,330,250	-		LRK54_RS06195	0.75	+0.3
1,330,250	-		LRK54_RS06195	0.75	-0.1
1,330,573	+				+0.4
1,330,573	+				+1.2
1,330,573	+				-0.9
1,330,573	+				-0.3
1,330,573	+				-1.4
1,330,573	+				+0.3
1,330,573	+				+0.1
1,330,573	+				-0.5
1,330,573	+				-0.4
1,330,573	+				-0.1
1,330,573	+				-0.1
1,330,573	+				-0.9
1,330,574	-				-0.3
1,330,574	-				-0.8
1,330,574	-				-0.3
1,330,574	-				-0.1
1,330,574	-				-0.2
1,330,574	-				-0.5
1,330,574	-				+0.3
1,330,574	-				-0.6
1,330,574	-				+0.1
1,330,574	-				-0.5
1,330,574	-				+0.6
1,330,574	-				-0.6
1,330,574	-				+0.4
1,330,574	-				-0.6
1,330,642	+				+0.4
1,330,642	+				+0.2
1,330,642	+				+0.5
1,330,642	+				-0.7
1,330,642	+				-0.2
1,330,642	+				-1.9
1,330,642	+				-0.6
1,330,642	+				-0.9
1,330,642	+				-0.7
1,330,642	+				+0.5
1,330,642	+				-0.3
1,330,642	+				-0.7
1,330,643	-				+0.5
1,330,643	-				-0.4
1,330,643	-				-0.2
1,330,643	-				+0.0
1,330,643	-				-0.4
1,330,643	-				+0.1
1,330,700	+				+0.5
1,330,700	+				-1.2
1,330,701	-				-0.1
1,330,701	-				-1.2
1,330,701	-				-0.7
1,330,701	-				+0.9
1,330,701	-				-1.9
1,330,701	-				+0.2
1,330,701	-				-0.7
1,330,701	-				-0.7
1,330,739	+		LRK54_RS06200	0.25	+0.2
1,330,740	-		LRK54_RS06200	0.25	+0.2
1,330,740	-		LRK54_RS06200	0.25	+0.3
1,330,740	-		LRK54_RS06200	0.25	-1.2
1,330,787	+		LRK54_RS06200	0.44	+0.4
1,330,787	+		LRK54_RS06200	0.44	-0.0
1,330,787	+		LRK54_RS06200	0.44	-0.2
1,330,787	+		LRK54_RS06200	0.44	-0.8
1,330,787	+		LRK54_RS06200	0.44	+0.6
1,330,787	+		LRK54_RS06200	0.44	+0.2
1,330,787	+		LRK54_RS06200	0.44	-1.3
1,330,787	+		LRK54_RS06200	0.44	+2.2
1,330,788	-		LRK54_RS06200	0.44	-0.9
1,330,788	-		LRK54_RS06200	0.44	+1.9
1,330,788	-		LRK54_RS06200	0.44	-2.0
1,330,788	-		LRK54_RS06200	0.44	+1.2
1,330,788	-		LRK54_RS06200	0.44	-0.3
1,330,788	-		LRK54_RS06200	0.44	+2.1
1,330,788	-		LRK54_RS06200	0.44	-0.9
1,330,788	-		LRK54_RS06200	0.44	-2.7
1,330,788	-		LRK54_RS06200	0.44	-0.4
1,330,788	-		LRK54_RS06200	0.44	+0.2
1,330,788	-		LRK54_RS06200	0.44	-0.8
1,330,788	-		LRK54_RS06200	0.44	+0.6
1,330,788	-		LRK54_RS06200	0.44	-0.7
1,330,788	-		LRK54_RS06200	0.44	-0.0
1,330,790	+		LRK54_RS06200	0.45	-0.0
1,330,790	+		LRK54_RS06200	0.45	+0.2
1,330,790	+		LRK54_RS06200	0.45	+0.3
1,330,790	+		LRK54_RS06200	0.45	-0.7
1,330,790	+		LRK54_RS06200	0.45	+0.9
1,330,790	+		LRK54_RS06200	0.45	-0.1
1,330,790	+		LRK54_RS06200	0.45	-0.1
1,330,791	-		LRK54_RS06200	0.45	+1.2
1,330,791	-		LRK54_RS06200	0.45	-0.5
1,330,791	-		LRK54_RS06200	0.45	-0.9
1,330,791	-		LRK54_RS06200	0.45	+0.3
1,330,791	-		LRK54_RS06200	0.45	+1.7
1,330,910	+				-0.1
1,330,910	+				-0.8
1,330,910	+				+0.7
1,330,910	+				+0.5
1,330,910	+				+0.6
1,330,910	+				+0.1
1,330,910	+				-0.1
1,330,911	-				+0.9
1,330,911	-				-0.4
1,330,911	-				-0.8
1,330,911	-				-0.8
1,330,911	-				-0.2
1,330,928	+				+0.6
1,330,928	+				+0.7
1,330,929	-				+0.1
1,330,929	-				+0.3
1,330,955	+				-0.0
1,330,955	+				-0.3
1,330,955	+				+0.2
1,330,955	+				+1.7
1,330,955	+				+0.5
1,331,087	+		LRK54_RS06205	0.18	-0.5
1,331,087	+		LRK54_RS06205	0.18	-1.0
1,331,087	+		LRK54_RS06205	0.18	+0.8
1,331,087	+		LRK54_RS06205	0.18	+1.1
1,331,087	+		LRK54_RS06205	0.18	+0.8
1,331,088	-		LRK54_RS06205	0.19	-1.0
1,331,088	-		LRK54_RS06205	0.19	+0.4
1,331,207	+		LRK54_RS06205	0.35	+0.4
1,331,207	+		LRK54_RS06205	0.35	+0.5
1,331,207	+		LRK54_RS06205	0.35	+0.3
1,331,208	-		LRK54_RS06205	0.35	-0.1
1,331,208	-		LRK54_RS06205	0.35	-0.7
1,331,208	-		LRK54_RS06205	0.35	-0.2
1,331,208	-		LRK54_RS06205	0.35	-0.5
1,331,208	-		LRK54_RS06205	0.35	-0.7
1,331,208	-		LRK54_RS06205	0.35	+0.1
1,331,208	-		LRK54_RS06205	0.35	-0.4
1,331,208	-		LRK54_RS06205	0.35	-0.3
1,331,208	-		LRK54_RS06205	0.35	+0.0
1,331,327	+		LRK54_RS06205	0.52	+0.2
1,331,327	+		LRK54_RS06205	0.52	+0.4
1,331,327	+		LRK54_RS06205	0.52	+0.7
1,331,327	+		LRK54_RS06205	0.52	+0.5
1,331,327	+		LRK54_RS06205	0.52	+1.7
1,331,327	+		LRK54_RS06205	0.52	-0.5
1,331,327	+		LRK54_RS06205	0.52	+0.2
1,331,327	+		LRK54_RS06205	0.52	-0.7
1,331,328	-		LRK54_RS06205	0.52	+0.5
1,331,328	-		LRK54_RS06205	0.52	+0.5
1,331,328	-		LRK54_RS06205	0.52	-1.1
1,331,576	+		LRK54_RS06205	0.86	-1.2
1,331,576	+		LRK54_RS06205	0.86	+0.2
1,331,577	-		LRK54_RS06205	0.86	+1.0
1,331,577	-		LRK54_RS06205	0.86	+0.0
1,331,618	+				-0.6
1,331,619	-				-1.8
1,331,619	-				-0.8
1,331,621	+				+0.2
1,331,621	+				+0.8
1,331,621	+				+0.9
1,331,621	+				+0.2
1,331,621	+				-0.2
1,331,621	+				-0.1
1,331,621	+				-0.2
1,331,621	+				-0.6
1,331,621	+				-0.4
1,331,621	+				+0.5
1,331,622	-				-2.3
1,331,622	-				+1.2
1,331,622	-				+0.1
1,331,622	-				-0.8
1,331,622	-				-0.2
1,331,840	+		LRK54_RS06210	0.25	-2.0
1,331,840	+		LRK54_RS06210	0.25	-0.5
1,331,864	+		LRK54_RS06210	0.30	+0.9
1,331,864	+		LRK54_RS06210	0.30	-0.0
1,331,865	-		LRK54_RS06210	0.30	-0.5
1,332,092	+		LRK54_RS06210	0.74	-2.4
1,332,093	-		LRK54_RS06210	0.74	+0.7
1,332,376	+		LRK54_RS06215	0.39	-0.6
1,332,376	+		LRK54_RS06215	0.39	-1.2
1,332,376	+		LRK54_RS06215	0.39	+1.7
1,332,376	+		LRK54_RS06215	0.39	+0.1
1,332,376	+		LRK54_RS06215	0.39	-0.8
1,332,376	+		LRK54_RS06215	0.39	-0.3
1,332,376	+		LRK54_RS06215	0.39	-0.5
1,332,377	-		LRK54_RS06215	0.39	-1.0
1,332,377	-		LRK54_RS06215	0.39	+0.4
1,332,377	-		LRK54_RS06215	0.39	+1.5
1,332,377	-		LRK54_RS06215	0.39	+0.3
1,332,377	-		LRK54_RS06215	0.39	-0.3
1,332,377	-		LRK54_RS06215	0.39	+0.5
1,332,377	-		LRK54_RS06215	0.39	-0.7
1,332,377	-		LRK54_RS06215	0.39	-0.8
1,332,583	+				-2.1
1,332,583	+				-2.4
1,332,583	+				+0.2
1,332,583	+				+1.7
1,332,583	+				+0.6
1,332,583	+				-0.6
1,332,583	+				+0.6
1,332,583	+				-0.5
1,332,584	-				-0.2
1,332,584	-				-0.6
1,332,584	-				-0.6
1,332,584	-				-0.2
1,332,584	-				+0.9
1,332,584	-				-0.6
1,332,584	-				+0.4
1,332,584	-				-0.1
1,332,598	+				+1.5
1,332,598	+				-0.1
1,332,598	+				-0.3
1,332,598	+				+0.6
1,332,598	+				+1.3
1,332,598	+				+0.5
1,332,598	+				-1.0
1,332,598	+				+0.2
1,332,598	+				+0.2
1,332,598	+				+0.5
1,332,598	+				-0.2
1,332,598	+				-0.7
1,332,598	+				-1.1
1,332,599	-				+0.5
1,332,599	-				-0.3
1,332,599	-				-0.5
1,332,599	-				+0.5
1,332,599	-				+0.2
1,332,599	-				-0.6
1,332,599	-				+0.6
1,332,599	-				+2.2
1,332,599	-				+0.5
1,332,599	-				+0.7
1,332,599	-				-0.4
1,332,599	-				-0.2
1,332,642	+				+0.6