Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt chpB and ppa are separated by 79 nucleotides ppa and ytfQ are separated by 309 nucleotides ytfQ and ytfR are separated by 139 nucleotides
b4225: chpB - toxin of the ChpB-ChpS toxin-antitoxin system (NCBI), at 4,446,715 to 4,447,065
chpB
b4226: ppa - inorganic pyrophosphatase (NCBI), at 4,447,145 to 4,447,675
ppa
b4227: ytfQ - predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI), at 4,447,985 to 4,448,941
ytfQ
b4485: ytfR - predicted sugar transporter subunit: ATP-binding component of ABC superfamily (NCBI), at 4,449,081 to 4,450,583
ytfR
Position (kb)
4447
4448
4449 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4447.006 kb on - strand, within chpB at 4447.006 kb on - strand, within chpB at 4447.057 kb on + strand at 4447.060 kb on + strand at 4447.060 kb on + strand at 4447.779 kb on + strand at 4447.787 kb on + strand at 4447.792 kb on + strand at 4447.795 kb on - strand at 4447.795 kb on - strand at 4447.797 kb on + strand at 4447.970 kb on + strand at 4447.978 kb on - strand at 4447.983 kb on - strand at 4447.983 kb on - strand at 4448.010 kb on + strand at 4448.039 kb on + strand at 4448.039 kb on - strand at 4448.345 kb on + strand, within ytfQ at 4448.347 kb on + strand, within ytfQ at 4448.429 kb on + strand, within ytfQ at 4448.429 kb on + strand, within ytfQ at 4448.452 kb on + strand, within ytfQ at 4448.538 kb on + strand, within ytfQ at 4448.630 kb on + strand, within ytfQ at 4448.630 kb on + strand, within ytfQ at 4448.630 kb on + strand, within ytfQ at 4448.630 kb on + strand, within ytfQ at 4448.653 kb on + strand, within ytfQ at 4448.675 kb on + strand, within ytfQ at 4448.732 kb on + strand, within ytfQ at 4448.770 kb on - strand, within ytfQ at 4448.825 kb on + strand, within ytfQ at 4448.825 kb on + strand, within ytfQ at 4448.884 kb on + strand at 4448.888 kb on - strand at 4448.890 kb on + strand at 4449.060 kb on + strand at 4449.060 kb on + strand at 4449.062 kb on + strand at 4449.062 kb on + strand at 4449.069 kb on - strand at 4449.249 kb on + strand, within ytfR at 4449.249 kb on + strand, within ytfR at 4449.257 kb on - strand, within ytfR at 4449.593 kb on + strand, within ytfR at 4449.705 kb on + strand, within ytfR at 4449.718 kb on - strand, within ytfR
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 4,447,006 - chpB b4225 0.83 -0.0 4,447,006 - chpB b4225 0.83 +0.0 4,447,057 + +1.0 4,447,060 + +2.4 4,447,060 + +0.2 4,447,779 + +0.2 4,447,787 + +0.7 4,447,792 + +0.2 4,447,795 - -1.1 4,447,795 - +1.4 4,447,797 + +0.2 4,447,970 + +1.3 4,447,978 - -0.3 4,447,983 - +1.2 4,447,983 - -0.8 4,448,010 + -1.0 4,448,039 + -0.1 4,448,039 - +1.6 4,448,345 + ytfQ b4227 0.38 -0.4 4,448,347 + ytfQ b4227 0.38 -0.8 4,448,429 + ytfQ b4227 0.46 +0.2 4,448,429 + ytfQ b4227 0.46 +3.2 4,448,452 + ytfQ b4227 0.49 +1.2 4,448,538 + ytfQ b4227 0.58 -1.1 4,448,630 + ytfQ b4227 0.67 +0.6 4,448,630 + ytfQ b4227 0.67 -1.6 4,448,630 + ytfQ b4227 0.67 +0.1 4,448,630 + ytfQ b4227 0.67 -1.1 4,448,653 + ytfQ b4227 0.70 -0.8 4,448,675 + ytfQ b4227 0.72 -0.0 4,448,732 + ytfQ b4227 0.78 -0.4 4,448,770 - ytfQ b4227 0.82 +0.2 4,448,825 + ytfQ b4227 0.88 +0.2 4,448,825 + ytfQ b4227 0.88 -1.8 4,448,884 + -1.0 4,448,888 - +0.9 4,448,890 + -0.4 4,449,060 + +0.6 4,449,060 + +0.4 4,449,062 + +0.6 4,449,062 + +0.6 4,449,069 - +1.8 4,449,249 + ytfR b4485 0.11 -1.3 4,449,249 + ytfR b4485 0.11 -0.6 4,449,257 - ytfR b4485 0.12 +0.6 4,449,593 + ytfR b4485 0.34 -0.2 4,449,705 + ytfR b4485 0.42 +0.8 4,449,718 - ytfR b4485 0.42 +1.8
Or see this region's nucleotide sequence