Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yqeH and yqeI are separated by 333 nucleotides yqeI and yqeJ overlap by 8 nucleotides yqeJ and yqeL are separated by 32 nucleotides yqeL and yqeK are separated by 35 nucleotides
b2846: yqeH - orf, hypothetical protein (VIMSS), at 2,985,558 to 2,986,190
yqeH
b2847: yqeI - predicted transcriptional regulator (NCBI), at 2,986,524 to 2,987,333
yqeI
b2848: yqeJ - orf, hypothetical protein (VIMSS), at 2,987,326 to 2,987,808
yqeJ
b4683: yqeL - expressed protein (RefSeq), at 2,987,841 to 2,987,921
yqeL
b2849: yqeK - orf, hypothetical protein (VIMSS), at 2,987,957 to 2,988,382
yqeK
Position (kb)
2986
2987
2988 Strain fitness (log2 ratio)
-1
0
1 at 2985.575 kb on + strand at 2985.829 kb on + strand, within yqeH at 2985.916 kb on + strand, within yqeH at 2986.179 kb on + strand at 2986.179 kb on + strand at 2986.213 kb on + strand at 2986.481 kb on - strand at 2986.590 kb on - strand at 2986.625 kb on - strand, within yqeI at 2986.657 kb on + strand, within yqeI at 2986.674 kb on - strand, within yqeI at 2986.710 kb on + strand, within yqeI at 2986.711 kb on + strand, within yqeI at 2986.715 kb on + strand, within yqeI at 2986.715 kb on + strand, within yqeI at 2986.737 kb on + strand, within yqeI at 2986.745 kb on - strand, within yqeI at 2986.776 kb on + strand, within yqeI at 2986.776 kb on + strand, within yqeI at 2986.783 kb on + strand, within yqeI at 2986.860 kb on + strand, within yqeI at 2986.875 kb on + strand, within yqeI at 2986.882 kb on + strand, within yqeI at 2986.884 kb on + strand, within yqeI at 2986.884 kb on + strand, within yqeI at 2986.886 kb on + strand, within yqeI at 2986.886 kb on + strand, within yqeI at 2986.890 kb on + strand, within yqeI at 2986.924 kb on + strand, within yqeI at 2987.296 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 2,985,575 + +0.2 2,985,829 + yqeH b2846 0.43 +0.8 2,985,916 + yqeH b2846 0.57 -0.3 2,986,179 + +0.7 2,986,179 + +1.6 2,986,213 + -0.0 2,986,481 - -1.2 2,986,590 - +0.3 2,986,625 - yqeI b2847 0.12 +0.1 2,986,657 + yqeI b2847 0.16 -0.5 2,986,674 - yqeI b2847 0.19 -0.0 2,986,710 + yqeI b2847 0.23 +0.5 2,986,711 + yqeI b2847 0.23 -1.6 2,986,715 + yqeI b2847 0.24 +0.1 2,986,715 + yqeI b2847 0.24 +1.0 2,986,737 + yqeI b2847 0.26 -0.8 2,986,745 - yqeI b2847 0.27 -0.8 2,986,776 + yqeI b2847 0.31 -0.1 2,986,776 + yqeI b2847 0.31 +1.0 2,986,783 + yqeI b2847 0.32 -0.6 2,986,860 + yqeI b2847 0.41 -0.6 2,986,875 + yqeI b2847 0.43 -0.9 2,986,882 + yqeI b2847 0.44 -0.2 2,986,884 + yqeI b2847 0.44 -0.3 2,986,884 + yqeI b2847 0.44 -0.4 2,986,886 + yqeI b2847 0.45 +1.3 2,986,886 + yqeI b2847 0.45 +0.4 2,986,890 + yqeI b2847 0.45 -0.3 2,986,924 + yqeI b2847 0.49 -1.2 2,987,296 + +0.5
Or see this region's nucleotide sequence