Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29520

Experiment: LB, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29515 and BPHYT_RS29520 are separated by 492 nucleotidesBPHYT_RS29520 and BPHYT_RS29525 are separated by 381 nucleotides BPHYT_RS29515: BPHYT_RS29515 - spermidine/putrescine ABC transporter substrate-binding protein, at 2,172,550 to 2,173,698 _RS29515 BPHYT_RS29520: BPHYT_RS29520 - hypothetical protein, at 2,174,191 to 2,174,442 _RS29520 BPHYT_RS29525: BPHYT_RS29525 - ABC transporter substrate-binding protein, at 2,174,824 to 2,175,606 _RS29525 Position (kb) 2174 2175Strain fitness (log2 ratio) -1 0 1at 2173.259 kb on - strand, within BPHYT_RS29515at 2173.320 kb on + strand, within BPHYT_RS29515at 2173.837 kb on - strandat 2173.905 kb on - strandat 2174.185 kb on + strandat 2174.382 kb on - strand, within BPHYT_RS29520at 2174.441 kb on - strandat 2174.449 kb on + strandat 2174.533 kb on - strandat 2174.597 kb on + strandat 2174.633 kb on + strandat 2174.633 kb on + strandat 2174.634 kb on - strandat 2174.641 kb on - strandat 2174.693 kb on + strandat 2174.805 kb on + strandat 2174.818 kb on + strandat 2175.274 kb on + strand, within BPHYT_RS29525

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 30C
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2,173,259 - BPHYT_RS29515 0.62 -1.4
2,173,320 + BPHYT_RS29515 0.67 +0.8
2,173,837 - -0.3
2,173,905 - +0.6
2,174,185 + -1.1
2,174,382 - BPHYT_RS29520 0.76 -0.9
2,174,441 - +0.5
2,174,449 + -0.4
2,174,533 - +0.3
2,174,597 + -1.2
2,174,633 + -0.5
2,174,633 + +0.0
2,174,634 - +0.5
2,174,641 - -0.0
2,174,693 + -0.2
2,174,805 + +0.4
2,174,818 + -0.4
2,175,274 + BPHYT_RS29525 0.57 +0.8

Or see this region's nucleotide sequence