Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27405

Experiment: LB, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27400 and BPHYT_RS27405 are separated by 70 nucleotidesBPHYT_RS27405 and BPHYT_RS27410 are separated by 68 nucleotides BPHYT_RS27400: BPHYT_RS27400 - D-amino acid oxidase, at 1,720,705 to 1,722,030 _RS27400 BPHYT_RS27405: BPHYT_RS27405 - aldehyde dehydrogenase, at 1,722,101 to 1,723,558 _RS27405 BPHYT_RS27410: BPHYT_RS27410 - amidohydrolase, at 1,723,627 to 1,724,817 _RS27410 Position (kb) 1722 1723 1724Strain fitness (log2 ratio) -1 0 1at 1721.504 kb on - strand, within BPHYT_RS27400at 1722.423 kb on - strand, within BPHYT_RS27405at 1723.208 kb on + strand, within BPHYT_RS27405at 1723.236 kb on + strand, within BPHYT_RS27405at 1723.470 kb on - strandat 1723.520 kb on + strandat 1723.548 kb on - strandat 1723.556 kb on + strandat 1724.558 kb on + strand, within BPHYT_RS27410

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 30C
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1,721,504 - BPHYT_RS27400 0.60 +0.9
1,722,423 - BPHYT_RS27405 0.22 -0.5
1,723,208 + BPHYT_RS27405 0.76 -1.7
1,723,236 + BPHYT_RS27405 0.78 -0.1
1,723,470 - -0.0
1,723,520 + -0.0
1,723,548 - +0.2
1,723,556 + -0.7
1,724,558 + BPHYT_RS27410 0.78 -0.8

Or see this region's nucleotide sequence