Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00659 and SMc00658 are separated by 263 nucleotides SMc00658 and SMc00657 are separated by 408 nucleotides SMc00657 and SMc00656 are separated by 150 nucleotides
SMc00659: SMc00659 - tRNA-specific 2-thiouridylase MnmA, at 2,917,687 to 2,918,883
SMc00659
SMc00658: SMc00658 - transcriptional regulator, at 2,919,147 to 2,919,890
SMc00658
SMc00657: SMc00657 - hypothetical protein, at 2,920,299 to 2,920,574
SMc00657
SMc00656: SMc00656 - hypothetical protein, at 2,920,725 to 2,921,006
SMc00656
Position (kb)
2919
2920 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2918.976 kb on - strand at 2918.976 kb on - strand at 2918.976 kb on - strand at 2919.083 kb on + strand at 2919.084 kb on - strand at 2919.084 kb on - strand at 2919.084 kb on - strand at 2919.084 kb on - strand at 2919.229 kb on + strand, within SMc00658 at 2919.230 kb on - strand, within SMc00658 at 2919.242 kb on + strand, within SMc00658 at 2919.243 kb on - strand, within SMc00658 at 2919.243 kb on - strand, within SMc00658 at 2919.244 kb on + strand, within SMc00658 at 2919.245 kb on - strand, within SMc00658 at 2919.365 kb on + strand, within SMc00658 at 2919.366 kb on - strand, within SMc00658 at 2919.394 kb on - strand, within SMc00658 at 2919.403 kb on + strand, within SMc00658 at 2919.403 kb on + strand, within SMc00658 at 2919.403 kb on + strand, within SMc00658 at 2919.404 kb on - strand, within SMc00658 at 2919.404 kb on - strand, within SMc00658 at 2919.475 kb on + strand, within SMc00658 at 2919.475 kb on + strand, within SMc00658 at 2919.475 kb on + strand, within SMc00658 at 2919.475 kb on + strand, within SMc00658 at 2919.475 kb on + strand, within SMc00658 at 2919.476 kb on - strand, within SMc00658 at 2919.476 kb on - strand, within SMc00658 at 2919.476 kb on - strand, within SMc00658 at 2919.476 kb on - strand, within SMc00658 at 2919.476 kb on - strand, within SMc00658 at 2919.621 kb on + strand, within SMc00658 at 2919.621 kb on + strand, within SMc00658 at 2919.622 kb on - strand, within SMc00658 at 2919.658 kb on + strand, within SMc00658 at 2919.658 kb on + strand, within SMc00658 at 2919.658 kb on + strand, within SMc00658 at 2919.658 kb on + strand, within SMc00658 at 2919.659 kb on - strand, within SMc00658 at 2919.659 kb on - strand, within SMc00658 at 2919.803 kb on - strand, within SMc00658 at 2920.039 kb on + strand at 2920.039 kb on + strand at 2920.690 kb on + strand at 2920.691 kb on - strand at 2920.803 kb on + strand, within SMc00656 at 2920.804 kb on - strand, within SMc00656
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 2,918,976 - -2.0 2,918,976 - -0.2 2,918,976 - +0.5 2,919,083 + +3.4 2,919,084 - -0.2 2,919,084 - -0.2 2,919,084 - +0.4 2,919,084 - +0.2 2,919,229 + SMc00658 0.11 -1.7 2,919,230 - SMc00658 0.11 -0.9 2,919,242 + SMc00658 0.13 -1.7 2,919,243 - SMc00658 0.13 -1.1 2,919,243 - SMc00658 0.13 -1.1 2,919,244 + SMc00658 0.13 -2.2 2,919,245 - SMc00658 0.13 +0.1 2,919,365 + SMc00658 0.29 -1.0 2,919,366 - SMc00658 0.29 -1.0 2,919,394 - SMc00658 0.33 +0.1 2,919,403 + SMc00658 0.34 -1.3 2,919,403 + SMc00658 0.34 -1.2 2,919,403 + SMc00658 0.34 -1.0 2,919,404 - SMc00658 0.35 -0.8 2,919,404 - SMc00658 0.35 -0.4 2,919,475 + SMc00658 0.44 -2.0 2,919,475 + SMc00658 0.44 -1.0 2,919,475 + SMc00658 0.44 -2.0 2,919,475 + SMc00658 0.44 -1.0 2,919,475 + SMc00658 0.44 -2.2 2,919,476 - SMc00658 0.44 -0.4 2,919,476 - SMc00658 0.44 -0.7 2,919,476 - SMc00658 0.44 -1.1 2,919,476 - SMc00658 0.44 +1.2 2,919,476 - SMc00658 0.44 +0.5 2,919,621 + SMc00658 0.64 -1.5 2,919,621 + SMc00658 0.64 -1.2 2,919,622 - SMc00658 0.64 -0.8 2,919,658 + SMc00658 0.69 +0.5 2,919,658 + SMc00658 0.69 -2.2 2,919,658 + SMc00658 0.69 +0.1 2,919,658 + SMc00658 0.69 -1.2 2,919,659 - SMc00658 0.69 -0.8 2,919,659 - SMc00658 0.69 -1.0 2,919,803 - SMc00658 0.88 -0.2 2,920,039 + -4.0 2,920,039 + -1.8 2,920,690 + -0.9 2,920,691 - -0.5 2,920,803 + SMc00656 0.28 -0.9 2,920,804 - SMc00656 0.28 -0.0
Or see this region's nucleotide sequence