Strain Fitness in Sinorhizobium meliloti 1021 around SMc00658

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00659 and SMc00658 are separated by 263 nucleotidesSMc00658 and SMc00657 are separated by 408 nucleotidesSMc00657 and SMc00656 are separated by 150 nucleotides SMc00659: SMc00659 - tRNA-specific 2-thiouridylase MnmA, at 2,917,687 to 2,918,883 SMc00659 SMc00658: SMc00658 - transcriptional regulator, at 2,919,147 to 2,919,890 SMc00658 SMc00657: SMc00657 - hypothetical protein, at 2,920,299 to 2,920,574 SMc00657 SMc00656: SMc00656 - hypothetical protein, at 2,920,725 to 2,921,006 SMc00656 Position (kb) 2919 2920Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2918.976 kb on - strandat 2918.976 kb on - strandat 2918.976 kb on - strandat 2919.083 kb on + strandat 2919.084 kb on - strandat 2919.084 kb on - strandat 2919.084 kb on - strandat 2919.084 kb on - strandat 2919.229 kb on + strand, within SMc00658at 2919.230 kb on - strand, within SMc00658at 2919.242 kb on + strand, within SMc00658at 2919.243 kb on - strand, within SMc00658at 2919.243 kb on - strand, within SMc00658at 2919.244 kb on + strand, within SMc00658at 2919.245 kb on - strand, within SMc00658at 2919.365 kb on + strand, within SMc00658at 2919.366 kb on - strand, within SMc00658at 2919.394 kb on - strand, within SMc00658at 2919.403 kb on + strand, within SMc00658at 2919.403 kb on + strand, within SMc00658at 2919.403 kb on + strand, within SMc00658at 2919.404 kb on - strand, within SMc00658at 2919.404 kb on - strand, within SMc00658at 2919.475 kb on + strand, within SMc00658at 2919.475 kb on + strand, within SMc00658at 2919.475 kb on + strand, within SMc00658at 2919.475 kb on + strand, within SMc00658at 2919.475 kb on + strand, within SMc00658at 2919.476 kb on - strand, within SMc00658at 2919.476 kb on - strand, within SMc00658at 2919.476 kb on - strand, within SMc00658at 2919.476 kb on - strand, within SMc00658at 2919.476 kb on - strand, within SMc00658at 2919.621 kb on + strand, within SMc00658at 2919.621 kb on + strand, within SMc00658at 2919.622 kb on - strand, within SMc00658at 2919.658 kb on + strand, within SMc00658at 2919.658 kb on + strand, within SMc00658at 2919.658 kb on + strand, within SMc00658at 2919.658 kb on + strand, within SMc00658at 2919.659 kb on - strand, within SMc00658at 2919.659 kb on - strand, within SMc00658at 2919.803 kb on - strand, within SMc00658at 2920.039 kb on + strandat 2920.039 kb on + strandat 2920.690 kb on + strandat 2920.691 kb on - strandat 2920.803 kb on + strand, within SMc00656at 2920.804 kb on - strand, within SMc00656

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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2,918,976 - -2.0
2,918,976 - -0.2
2,918,976 - +0.5
2,919,083 + +3.4
2,919,084 - -0.2
2,919,084 - -0.2
2,919,084 - +0.4
2,919,084 - +0.2
2,919,229 + SMc00658 0.11 -1.7
2,919,230 - SMc00658 0.11 -0.9
2,919,242 + SMc00658 0.13 -1.7
2,919,243 - SMc00658 0.13 -1.1
2,919,243 - SMc00658 0.13 -1.1
2,919,244 + SMc00658 0.13 -2.2
2,919,245 - SMc00658 0.13 +0.1
2,919,365 + SMc00658 0.29 -1.0
2,919,366 - SMc00658 0.29 -1.0
2,919,394 - SMc00658 0.33 +0.1
2,919,403 + SMc00658 0.34 -1.3
2,919,403 + SMc00658 0.34 -1.2
2,919,403 + SMc00658 0.34 -1.0
2,919,404 - SMc00658 0.35 -0.8
2,919,404 - SMc00658 0.35 -0.4
2,919,475 + SMc00658 0.44 -2.0
2,919,475 + SMc00658 0.44 -1.0
2,919,475 + SMc00658 0.44 -2.0
2,919,475 + SMc00658 0.44 -1.0
2,919,475 + SMc00658 0.44 -2.2
2,919,476 - SMc00658 0.44 -0.4
2,919,476 - SMc00658 0.44 -0.7
2,919,476 - SMc00658 0.44 -1.1
2,919,476 - SMc00658 0.44 +1.2
2,919,476 - SMc00658 0.44 +0.5
2,919,621 + SMc00658 0.64 -1.5
2,919,621 + SMc00658 0.64 -1.2
2,919,622 - SMc00658 0.64 -0.8
2,919,658 + SMc00658 0.69 +0.5
2,919,658 + SMc00658 0.69 -2.2
2,919,658 + SMc00658 0.69 +0.1
2,919,658 + SMc00658 0.69 -1.2
2,919,659 - SMc00658 0.69 -0.8
2,919,659 - SMc00658 0.69 -1.0
2,919,803 - SMc00658 0.88 -0.2
2,920,039 + -4.0
2,920,039 + -1.8
2,920,690 + -0.9
2,920,691 - -0.5
2,920,803 + SMc00656 0.28 -0.9
2,920,804 - SMc00656 0.28 -0.0

Or see this region's nucleotide sequence