Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0452

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0451 and Echvi_0452 are separated by 8 nucleotidesEchvi_0452 and Echvi_0453 are separated by 199 nucleotidesEchvi_0453 and Echvi_0454 overlap by 14 nucleotides Echvi_0451: Echvi_0451 - hypothetical protein, at 494,212 to 495,504 _0451 Echvi_0452: Echvi_0452 - hypothetical protein, at 495,513 to 496,055 _0452 Echvi_0453: Echvi_0453 - RNA polymerase sigma factor, sigma-70 family, at 496,255 to 496,812 _0453 Echvi_0454: Echvi_0454 - Tetratricopeptide repeat., at 496,799 to 497,521 _0454 Position (kb) 495 496 497Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 494.620 kb on + strand, within Echvi_0451at 494.621 kb on - strand, within Echvi_0451at 494.621 kb on - strand, within Echvi_0451at 494.625 kb on - strand, within Echvi_0451at 494.637 kb on + strand, within Echvi_0451at 494.683 kb on - strand, within Echvi_0451at 494.683 kb on - strand, within Echvi_0451at 494.685 kb on + strand, within Echvi_0451at 494.685 kb on + strand, within Echvi_0451at 494.692 kb on + strand, within Echvi_0451at 494.693 kb on - strand, within Echvi_0451at 494.698 kb on - strand, within Echvi_0451at 494.698 kb on - strand, within Echvi_0451at 494.759 kb on + strand, within Echvi_0451at 494.772 kb on + strand, within Echvi_0451at 494.804 kb on + strand, within Echvi_0451at 494.814 kb on + strand, within Echvi_0451at 494.815 kb on - strand, within Echvi_0451at 494.817 kb on + strand, within Echvi_0451at 494.824 kb on + strand, within Echvi_0451at 494.825 kb on - strand, within Echvi_0451at 494.825 kb on - strand, within Echvi_0451at 494.825 kb on - strand, within Echvi_0451at 494.826 kb on + strand, within Echvi_0451at 494.959 kb on + strand, within Echvi_0451at 495.086 kb on - strand, within Echvi_0451at 495.090 kb on + strand, within Echvi_0451at 495.190 kb on + strand, within Echvi_0451at 495.218 kb on - strand, within Echvi_0451at 495.218 kb on - strand, within Echvi_0451at 495.218 kb on - strand, within Echvi_0451at 495.218 kb on - strand, within Echvi_0451at 495.221 kb on + strand, within Echvi_0451at 495.221 kb on + strand, within Echvi_0451at 495.221 kb on + strand, within Echvi_0451at 495.222 kb on - strand, within Echvi_0451at 495.222 kb on - strand, within Echvi_0451at 495.222 kb on - strand, within Echvi_0451at 495.224 kb on - strand, within Echvi_0451at 495.264 kb on + strand, within Echvi_0451at 495.308 kb on + strand, within Echvi_0451at 495.308 kb on + strand, within Echvi_0451at 495.308 kb on + strand, within Echvi_0451at 495.308 kb on + strand, within Echvi_0451at 495.309 kb on - strand, within Echvi_0451at 495.355 kb on - strand, within Echvi_0451at 495.424 kb on - strandat 495.507 kb on + strandat 495.519 kb on - strandat 495.589 kb on + strand, within Echvi_0452at 495.745 kb on + strand, within Echvi_0452at 495.787 kb on - strand, within Echvi_0452at 495.787 kb on - strand, within Echvi_0452at 495.788 kb on + strand, within Echvi_0452at 495.788 kb on + strand, within Echvi_0452at 495.789 kb on - strand, within Echvi_0452at 495.789 kb on - strand, within Echvi_0452at 495.820 kb on + strand, within Echvi_0452at 495.889 kb on + strand, within Echvi_0452at 495.899 kb on + strand, within Echvi_0452at 495.900 kb on - strand, within Echvi_0452at 495.907 kb on - strand, within Echvi_0452at 495.925 kb on + strand, within Echvi_0452at 495.926 kb on - strand, within Echvi_0452at 495.926 kb on - strand, within Echvi_0452at 495.972 kb on - strand, within Echvi_0452at 496.124 kb on + strandat 496.156 kb on + strandat 496.156 kb on + strandat 496.158 kb on + strandat 496.158 kb on + strandat 496.158 kb on + strandat 496.159 kb on - strandat 496.159 kb on - strandat 496.192 kb on + strandat 496.192 kb on + strandat 496.230 kb on + strandat 496.238 kb on - strandat 496.252 kb on + strandat 496.287 kb on - strandat 496.290 kb on + strandat 496.291 kb on - strandat 496.291 kb on - strandat 496.321 kb on + strand, within Echvi_0453at 496.323 kb on + strand, within Echvi_0453at 496.323 kb on + strand, within Echvi_0453at 496.324 kb on - strand, within Echvi_0453at 496.363 kb on + strand, within Echvi_0453at 496.368 kb on + strand, within Echvi_0453at 496.380 kb on + strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.412 kb on + strand, within Echvi_0453at 496.412 kb on + strand, within Echvi_0453at 496.413 kb on - strand, within Echvi_0453at 496.415 kb on + strand, within Echvi_0453at 496.415 kb on + strand, within Echvi_0453at 496.416 kb on - strand, within Echvi_0453at 496.416 kb on - strand, within Echvi_0453at 496.416 kb on - strand, within Echvi_0453at 496.433 kb on + strand, within Echvi_0453at 496.497 kb on + strand, within Echvi_0453at 496.541 kb on + strand, within Echvi_0453at 496.541 kb on + strand, within Echvi_0453at 496.568 kb on + strand, within Echvi_0453at 496.568 kb on + strand, within Echvi_0453at 496.568 kb on + strand, within Echvi_0453at 496.568 kb on + strand, within Echvi_0453at 496.589 kb on - strand, within Echvi_0453at 496.682 kb on - strand, within Echvi_0453at 496.727 kb on - strand, within Echvi_0453at 496.746 kb on - strand, within Echvi_0453at 496.770 kb on - strandat 496.778 kb on + strandat 496.799 kb on - strandat 496.799 kb on - strandat 497.027 kb on + strand, within Echvi_0454at 497.027 kb on + strand, within Echvi_0454at 497.027 kb on + strand, within Echvi_0454at 497.046 kb on + strand, within Echvi_0454at 497.046 kb on + strand, within Echvi_0454at 497.050 kb on - strand, within Echvi_0454

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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494,620 + Echvi_0451 0.32 -0.5
494,621 - Echvi_0451 0.32 -0.3
494,621 - Echvi_0451 0.32 +0.4
494,625 - Echvi_0451 0.32 -2.0
494,637 + Echvi_0451 0.33 +2.9
494,683 - Echvi_0451 0.36 +0.0
494,683 - Echvi_0451 0.36 -0.5
494,685 + Echvi_0451 0.37 +1.7
494,685 + Echvi_0451 0.37 +0.9
494,692 + Echvi_0451 0.37 +0.9
494,693 - Echvi_0451 0.37 +1.2
494,698 - Echvi_0451 0.38 -2.4
494,698 - Echvi_0451 0.38 +0.5
494,759 + Echvi_0451 0.42 -0.2
494,772 + Echvi_0451 0.43 -0.7
494,804 + Echvi_0451 0.46 -1.7
494,814 + Echvi_0451 0.47 +2.5
494,815 - Echvi_0451 0.47 -1.0
494,817 + Echvi_0451 0.47 -1.0
494,824 + Echvi_0451 0.47 -1.8
494,825 - Echvi_0451 0.47 -3.1
494,825 - Echvi_0451 0.47 -1.4
494,825 - Echvi_0451 0.47 +0.5
494,826 + Echvi_0451 0.47 +2.8
494,959 + Echvi_0451 0.58 -2.6
495,086 - Echvi_0451 0.68 -1.4
495,090 + Echvi_0451 0.68 -2.0
495,190 + Echvi_0451 0.76 +0.9
495,218 - Echvi_0451 0.78 -2.8
495,218 - Echvi_0451 0.78 +1.9
495,218 - Echvi_0451 0.78 +0.4
495,218 - Echvi_0451 0.78 -3.2
495,221 + Echvi_0451 0.78 +1.4
495,221 + Echvi_0451 0.78 -1.6
495,221 + Echvi_0451 0.78 -0.7
495,222 - Echvi_0451 0.78 -1.1
495,222 - Echvi_0451 0.78 -0.9
495,222 - Echvi_0451 0.78 -1.9
495,224 - Echvi_0451 0.78 +1.4
495,264 + Echvi_0451 0.81 -2.2
495,308 + Echvi_0451 0.85 +0.4
495,308 + Echvi_0451 0.85 +1.1
495,308 + Echvi_0451 0.85 +1.0
495,308 + Echvi_0451 0.85 +0.6
495,309 - Echvi_0451 0.85 +2.8
495,355 - Echvi_0451 0.88 +3.3
495,424 - -1.3
495,507 + +0.9
495,519 - +1.7
495,589 + Echvi_0452 0.14 -1.2
495,745 + Echvi_0452 0.43 +0.9
495,787 - Echvi_0452 0.50 -3.0
495,787 - Echvi_0452 0.50 -2.1
495,788 + Echvi_0452 0.51 -2.3
495,788 + Echvi_0452 0.51 +2.0
495,789 - Echvi_0452 0.51 -1.6
495,789 - Echvi_0452 0.51 -2.4
495,820 + Echvi_0452 0.57 -0.1
495,889 + Echvi_0452 0.69 +0.5
495,899 + Echvi_0452 0.71 -0.9
495,900 - Echvi_0452 0.71 -0.7
495,907 - Echvi_0452 0.73 -4.2
495,925 + Echvi_0452 0.76 +0.2
495,926 - Echvi_0452 0.76 -0.7
495,926 - Echvi_0452 0.76 -2.8
495,972 - Echvi_0452 0.85 -1.7
496,124 + -0.1
496,156 + -1.8
496,156 + -0.4
496,158 + +0.9
496,158 + -2.6
496,158 + -0.2
496,159 - -0.1
496,159 - -0.4
496,192 + -1.9
496,192 + +1.6
496,230 + +0.5
496,238 - +0.5
496,252 + +1.0
496,287 - +0.2
496,290 + +3.3
496,291 - +1.6
496,291 - +0.8
496,321 + Echvi_0453 0.12 +2.5
496,323 + Echvi_0453 0.12 -0.1
496,323 + Echvi_0453 0.12 -1.5
496,324 - Echvi_0453 0.12 -0.9
496,363 + Echvi_0453 0.19 -1.7
496,368 + Echvi_0453 0.20 -0.4
496,380 + Echvi_0453 0.22 -1.3
496,381 - Echvi_0453 0.23 +1.1
496,381 - Echvi_0453 0.23 +0.4
496,381 - Echvi_0453 0.23 -2.2
496,381 - Echvi_0453 0.23 +2.8
496,412 + Echvi_0453 0.28 +2.3
496,412 + Echvi_0453 0.28 +0.5
496,413 - Echvi_0453 0.28 -0.1
496,415 + Echvi_0453 0.29 +0.5
496,415 + Echvi_0453 0.29 +2.5
496,416 - Echvi_0453 0.29 -0.9
496,416 - Echvi_0453 0.29 +0.1
496,416 - Echvi_0453 0.29 -0.1
496,433 + Echvi_0453 0.32 +1.9
496,497 + Echvi_0453 0.43 +0.1
496,541 + Echvi_0453 0.51 +3.6
496,541 + Echvi_0453 0.51 -0.8
496,568 + Echvi_0453 0.56 +0.1
496,568 + Echvi_0453 0.56 +0.5
496,568 + Echvi_0453 0.56 +0.4
496,568 + Echvi_0453 0.56 -0.7
496,589 - Echvi_0453 0.60 -0.3
496,682 - Echvi_0453 0.77 -2.3
496,727 - Echvi_0453 0.85 -2.9
496,746 - Echvi_0453 0.88 +1.1
496,770 - +1.2
496,778 + +1.4
496,799 - +0.4
496,799 - -0.5
497,027 + Echvi_0454 0.32 -2.5
497,027 + Echvi_0454 0.32 -1.3
497,027 + Echvi_0454 0.32 -2.3
497,046 + Echvi_0454 0.34 -1.4
497,046 + Echvi_0454 0.34 -0.7
497,050 - Echvi_0454 0.35 +0.8

Or see this region's nucleotide sequence