Strain Fitness in Sinorhizobium meliloti 1021 around SMc01173

Experiment: LB, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01174 and SMc01173 are separated by 7 nucleotidesSMc01173 and SMc01172 are separated by 197 nucleotides SMc01174: SMc01174 - cysteine synthase A, at 1,755,660 to 1,756,745 SMc01174 SMc01173: SMc01173 - hypothetical protein, at 1,756,753 to 1,757,502 SMc01173 SMc01172: SMc01172 - thiosulfate sulfurtransferase, at 1,757,700 to 1,758,563 SMc01172 Position (kb) 1756 1757 1758Strain fitness (log2 ratio) -2 -1 0 1at 1755.915 kb on - strand, within SMc01174at 1755.967 kb on - strand, within SMc01174at 1756.066 kb on - strand, within SMc01174at 1756.083 kb on + strand, within SMc01174at 1756.083 kb on + strand, within SMc01174at 1756.083 kb on + strand, within SMc01174at 1756.084 kb on - strand, within SMc01174at 1756.084 kb on - strand, within SMc01174at 1756.084 kb on - strand, within SMc01174at 1756.084 kb on - strand, within SMc01174at 1756.353 kb on + strand, within SMc01174at 1756.353 kb on + strand, within SMc01174at 1756.354 kb on - strand, within SMc01174at 1756.494 kb on + strand, within SMc01174at 1756.494 kb on + strand, within SMc01174at 1756.494 kb on + strand, within SMc01174at 1756.495 kb on - strand, within SMc01174at 1756.524 kb on - strand, within SMc01174at 1756.524 kb on - strand, within SMc01174at 1756.623 kb on + strand, within SMc01174at 1756.623 kb on + strand, within SMc01174at 1756.624 kb on - strand, within SMc01174at 1756.636 kb on - strand, within SMc01174at 1756.717 kb on + strandat 1756.717 kb on + strandat 1756.718 kb on - strandat 1756.718 kb on - strandat 1756.728 kb on + strandat 1756.744 kb on - strandat 1756.744 kb on - strandat 1756.868 kb on - strand, within SMc01173at 1757.054 kb on - strand, within SMc01173at 1757.234 kb on - strand, within SMc01173at 1757.464 kb on - strandat 1757.465 kb on + strandat 1757.596 kb on - strandat 1757.672 kb on - strandat 1757.785 kb on + strandat 1757.786 kb on - strandat 1757.839 kb on - strand, within SMc01172at 1758.299 kb on + strand, within SMc01172at 1758.300 kb on - strand, within SMc01172at 1758.300 kb on - strand, within SMc01172at 1758.331 kb on + strand, within SMc01172at 1758.331 kb on + strand, within SMc01172at 1758.332 kb on - strand, within SMc01172at 1758.482 kb on + strandat 1758.483 kb on - strandat 1758.483 kb on - strandat 1758.483 kb on - strandat 1758.483 kb on - strandat 1758.492 kb on - strandat 1758.492 kb on - strandat 1758.492 kb on - strandat 1758.499 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH7
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1,755,915 - SMc01174 0.23 +0.0
1,755,967 - SMc01174 0.28 -0.9
1,756,066 - SMc01174 0.37 +0.2
1,756,083 + SMc01174 0.39 +0.1
1,756,083 + SMc01174 0.39 +0.0
1,756,083 + SMc01174 0.39 +0.1
1,756,084 - SMc01174 0.39 -0.1
1,756,084 - SMc01174 0.39 -0.3
1,756,084 - SMc01174 0.39 -0.0
1,756,084 - SMc01174 0.39 -0.8
1,756,353 + SMc01174 0.64 +0.4
1,756,353 + SMc01174 0.64 +0.1
1,756,354 - SMc01174 0.64 +0.8
1,756,494 + SMc01174 0.77 -2.0
1,756,494 + SMc01174 0.77 +1.0
1,756,494 + SMc01174 0.77 +1.3
1,756,495 - SMc01174 0.77 +1.2
1,756,524 - SMc01174 0.80 +0.6
1,756,524 - SMc01174 0.80 +0.0
1,756,623 + SMc01174 0.89 -1.5
1,756,623 + SMc01174 0.89 -0.2
1,756,624 - SMc01174 0.89 +1.1
1,756,636 - SMc01174 0.90 +1.1
1,756,717 + +0.3
1,756,717 + -0.2
1,756,718 - +0.3
1,756,718 - +0.1
1,756,728 + -0.4
1,756,744 - +0.1
1,756,744 - +0.5
1,756,868 - SMc01173 0.15 +0.4
1,757,054 - SMc01173 0.40 +0.2
1,757,234 - SMc01173 0.64 +0.4
1,757,464 - -1.0
1,757,465 + +1.7
1,757,596 - +0.2
1,757,672 - -1.4
1,757,785 + -0.1
1,757,786 - -0.2
1,757,839 - SMc01172 0.16 +0.1
1,758,299 + SMc01172 0.69 -0.7
1,758,300 - SMc01172 0.69 +0.5
1,758,300 - SMc01172 0.69 -1.3
1,758,331 + SMc01172 0.73 -0.9
1,758,331 + SMc01172 0.73 -1.3
1,758,332 - SMc01172 0.73 +0.3
1,758,482 + -0.5
1,758,483 - -0.2
1,758,483 - +0.5
1,758,483 - +1.0
1,758,483 - +0.5
1,758,492 - +0.0
1,758,492 - +0.4
1,758,492 - -0.0
1,758,499 - -0.3

Or see this region's nucleotide sequence