Experiment: LB, pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01174 and SMc01173 are separated by 7 nucleotides SMc01173 and SMc01172 are separated by 197 nucleotides
SMc01174: SMc01174 - cysteine synthase A, at 1,755,660 to 1,756,745
SMc01174
SMc01173: SMc01173 - hypothetical protein, at 1,756,753 to 1,757,502
SMc01173
SMc01172: SMc01172 - thiosulfate sulfurtransferase, at 1,757,700 to 1,758,563
SMc01172
Position (kb)
1756
1757
1758 Strain fitness (log2 ratio)
-2
-1
0
1 at 1755.915 kb on - strand, within SMc01174 at 1755.967 kb on - strand, within SMc01174 at 1756.066 kb on - strand, within SMc01174 at 1756.083 kb on + strand, within SMc01174 at 1756.083 kb on + strand, within SMc01174 at 1756.083 kb on + strand, within SMc01174 at 1756.084 kb on - strand, within SMc01174 at 1756.084 kb on - strand, within SMc01174 at 1756.084 kb on - strand, within SMc01174 at 1756.084 kb on - strand, within SMc01174 at 1756.353 kb on + strand, within SMc01174 at 1756.353 kb on + strand, within SMc01174 at 1756.354 kb on - strand, within SMc01174 at 1756.494 kb on + strand, within SMc01174 at 1756.494 kb on + strand, within SMc01174 at 1756.494 kb on + strand, within SMc01174 at 1756.495 kb on - strand, within SMc01174 at 1756.524 kb on - strand, within SMc01174 at 1756.524 kb on - strand, within SMc01174 at 1756.623 kb on + strand, within SMc01174 at 1756.623 kb on + strand, within SMc01174 at 1756.624 kb on - strand, within SMc01174 at 1756.636 kb on - strand, within SMc01174 at 1756.717 kb on + strand at 1756.717 kb on + strand at 1756.718 kb on - strand at 1756.718 kb on - strand at 1756.728 kb on + strand at 1756.744 kb on - strand at 1756.744 kb on - strand at 1756.868 kb on - strand, within SMc01173 at 1757.054 kb on - strand, within SMc01173 at 1757.234 kb on - strand, within SMc01173 at 1757.464 kb on - strand at 1757.465 kb on + strand at 1757.596 kb on - strand at 1757.672 kb on - strand at 1757.785 kb on + strand at 1757.786 kb on - strand at 1757.839 kb on - strand, within SMc01172 at 1758.299 kb on + strand, within SMc01172 at 1758.300 kb on - strand, within SMc01172 at 1758.300 kb on - strand, within SMc01172 at 1758.331 kb on + strand, within SMc01172 at 1758.331 kb on + strand, within SMc01172 at 1758.332 kb on - strand, within SMc01172 at 1758.482 kb on + strand at 1758.483 kb on - strand at 1758.483 kb on - strand at 1758.483 kb on - strand at 1758.483 kb on - strand at 1758.492 kb on - strand at 1758.492 kb on - strand at 1758.492 kb on - strand at 1758.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH7 remove 1,755,915 - SMc01174 0.23 +0.0 1,755,967 - SMc01174 0.28 -0.9 1,756,066 - SMc01174 0.37 +0.2 1,756,083 + SMc01174 0.39 +0.1 1,756,083 + SMc01174 0.39 +0.0 1,756,083 + SMc01174 0.39 +0.1 1,756,084 - SMc01174 0.39 -0.1 1,756,084 - SMc01174 0.39 -0.3 1,756,084 - SMc01174 0.39 -0.0 1,756,084 - SMc01174 0.39 -0.8 1,756,353 + SMc01174 0.64 +0.4 1,756,353 + SMc01174 0.64 +0.1 1,756,354 - SMc01174 0.64 +0.8 1,756,494 + SMc01174 0.77 -2.0 1,756,494 + SMc01174 0.77 +1.0 1,756,494 + SMc01174 0.77 +1.3 1,756,495 - SMc01174 0.77 +1.2 1,756,524 - SMc01174 0.80 +0.6 1,756,524 - SMc01174 0.80 +0.0 1,756,623 + SMc01174 0.89 -1.5 1,756,623 + SMc01174 0.89 -0.2 1,756,624 - SMc01174 0.89 +1.1 1,756,636 - SMc01174 0.90 +1.1 1,756,717 + +0.3 1,756,717 + -0.2 1,756,718 - +0.3 1,756,718 - +0.1 1,756,728 + -0.4 1,756,744 - +0.1 1,756,744 - +0.5 1,756,868 - SMc01173 0.15 +0.4 1,757,054 - SMc01173 0.40 +0.2 1,757,234 - SMc01173 0.64 +0.4 1,757,464 - -1.0 1,757,465 + +1.7 1,757,596 - +0.2 1,757,672 - -1.4 1,757,785 + -0.1 1,757,786 - -0.2 1,757,839 - SMc01172 0.16 +0.1 1,758,299 + SMc01172 0.69 -0.7 1,758,300 - SMc01172 0.69 +0.5 1,758,300 - SMc01172 0.69 -1.3 1,758,331 + SMc01172 0.73 -0.9 1,758,331 + SMc01172 0.73 -1.3 1,758,332 - SMc01172 0.73 +0.3 1,758,482 + -0.5 1,758,483 - -0.2 1,758,483 - +0.5 1,758,483 - +1.0 1,758,483 - +0.5 1,758,492 - +0.0 1,758,492 - +0.4 1,758,492 - -0.0 1,758,499 - -0.3
Or see this region's nucleotide sequence