Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20631 and SM_b20632 are separated by 19 nucleotides SM_b20632 and SM_b20633 overlap by 4 nucleotides SM_b20633 and SM_b20634 are separated by 190 nucleotides
SM_b20631: SM_b20631 - hypothetical protein, at 1,650,017 to 1,651,939
_b20631
SM_b20632: SM_b20632 - sugar uptake ABC transporter permease, at 1,651,959 to 1,652,822
_b20632
SM_b20633: SM_b20633 - sugar uptake ABC transporter permease, at 1,652,819 to 1,653,736
_b20633
SM_b20634: SM_b20634 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,653,927 to 1,655,162
_b20634
Position (kb)
1652
1653
1654 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1651.994 kb on - strand at 1651.994 kb on - strand at 1652.126 kb on - strand, within SM_b20632 at 1652.359 kb on + strand, within SM_b20632 at 1652.360 kb on - strand, within SM_b20632 at 1652.360 kb on - strand, within SM_b20632 at 1652.952 kb on + strand, within SM_b20633 at 1652.952 kb on + strand, within SM_b20633 at 1652.953 kb on - strand, within SM_b20633 at 1653.003 kb on + strand, within SM_b20633 at 1653.003 kb on + strand, within SM_b20633 at 1653.004 kb on - strand, within SM_b20633 at 1653.238 kb on + strand, within SM_b20633 at 1653.287 kb on - strand, within SM_b20633 at 1653.479 kb on - strand, within SM_b20633 at 1653.481 kb on - strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.538 kb on - strand, within SM_b20633 at 1653.538 kb on - strand, within SM_b20633 at 1653.658 kb on + strand at 1653.659 kb on - strand at 1653.660 kb on + strand at 1653.660 kb on + strand at 1653.660 kb on + strand at 1653.661 kb on - strand at 1653.795 kb on + strand at 1653.795 kb on + strand at 1654.001 kb on - strand at 1654.070 kb on + strand, within SM_b20634 at 1654.070 kb on + strand, within SM_b20634 at 1654.070 kb on + strand, within SM_b20634 at 1654.071 kb on - strand, within SM_b20634 at 1654.073 kb on - strand, within SM_b20634 at 1654.210 kb on + strand, within SM_b20634 at 1654.210 kb on + strand, within SM_b20634 at 1654.211 kb on - strand, within SM_b20634 at 1654.214 kb on + strand, within SM_b20634 at 1654.214 kb on + strand, within SM_b20634 at 1654.214 kb on + strand, within SM_b20634 at 1654.215 kb on - strand, within SM_b20634 at 1654.215 kb on - strand, within SM_b20634 at 1654.215 kb on - strand, within SM_b20634 at 1654.215 kb on - strand, within SM_b20634 at 1654.215 kb on - strand, within SM_b20634 at 1654.216 kb on + strand, within SM_b20634 at 1654.217 kb on - strand, within SM_b20634 at 1654.217 kb on - strand, within SM_b20634 at 1654.217 kb on - strand, within SM_b20634 at 1654.369 kb on - strand, within SM_b20634 at 1654.517 kb on + strand, within SM_b20634 at 1654.628 kb on - strand, within SM_b20634 at 1654.628 kb on - strand, within SM_b20634 at 1654.628 kb on - strand, within SM_b20634 at 1654.636 kb on + strand, within SM_b20634 at 1654.733 kb on - strand, within SM_b20634
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 1,651,994 - -1.0 1,651,994 - -0.8 1,652,126 - SM_b20632 0.19 -0.6 1,652,359 + SM_b20632 0.46 -1.5 1,652,360 - SM_b20632 0.46 +0.4 1,652,360 - SM_b20632 0.46 +0.5 1,652,952 + SM_b20633 0.14 -0.4 1,652,952 + SM_b20633 0.14 -0.3 1,652,953 - SM_b20633 0.15 -0.5 1,653,003 + SM_b20633 0.20 +0.6 1,653,003 + SM_b20633 0.20 -0.5 1,653,004 - SM_b20633 0.20 -0.2 1,653,238 + SM_b20633 0.46 +0.0 1,653,287 - SM_b20633 0.51 +1.7 1,653,479 - SM_b20633 0.72 +1.2 1,653,481 - SM_b20633 0.72 +0.4 1,653,537 + SM_b20633 0.78 +0.2 1,653,537 + SM_b20633 0.78 +1.7 1,653,537 + SM_b20633 0.78 +2.7 1,653,537 + SM_b20633 0.78 -0.2 1,653,537 + SM_b20633 0.78 +0.4 1,653,538 - SM_b20633 0.78 +1.6 1,653,538 - SM_b20633 0.78 -1.0 1,653,658 + -0.9 1,653,659 - +0.8 1,653,660 + -0.0 1,653,660 + -0.7 1,653,660 + -0.5 1,653,661 - -0.5 1,653,795 + -2.5 1,653,795 + +0.3 1,654,001 - -0.2 1,654,070 + SM_b20634 0.12 -0.4 1,654,070 + SM_b20634 0.12 +0.2 1,654,070 + SM_b20634 0.12 +0.9 1,654,071 - SM_b20634 0.12 -1.6 1,654,073 - SM_b20634 0.12 -0.1 1,654,210 + SM_b20634 0.23 -0.1 1,654,210 + SM_b20634 0.23 +0.2 1,654,211 - SM_b20634 0.23 -0.6 1,654,214 + SM_b20634 0.23 +0.0 1,654,214 + SM_b20634 0.23 -1.7 1,654,214 + SM_b20634 0.23 +0.1 1,654,215 - SM_b20634 0.23 -0.5 1,654,215 - SM_b20634 0.23 -0.3 1,654,215 - SM_b20634 0.23 -0.5 1,654,215 - SM_b20634 0.23 -1.0 1,654,215 - SM_b20634 0.23 +0.1 1,654,216 + SM_b20634 0.23 -0.8 1,654,217 - SM_b20634 0.23 +0.3 1,654,217 - SM_b20634 0.23 -0.2 1,654,217 - SM_b20634 0.23 +0.1 1,654,369 - SM_b20634 0.36 -2.1 1,654,517 + SM_b20634 0.48 +0.9 1,654,628 - SM_b20634 0.57 +2.5 1,654,628 - SM_b20634 0.57 +0.8 1,654,628 - SM_b20634 0.57 -1.1 1,654,636 + SM_b20634 0.57 -1.3 1,654,733 - SM_b20634 0.65 -0.4
Or see this region's nucleotide sequence