Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11020

Experiment: LB, pH6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS11020 and BPHYT_RS11025 are separated by 158 nucleotidesBPHYT_RS11025 and BPHYT_RS11030 are separated by 46 nucleotides BPHYT_RS11020: BPHYT_RS11020 - transporter, at 2,503,673 to 2,504,191 _RS11020 BPHYT_RS11025: BPHYT_RS11025 - extradiol dioxygenase, at 2,504,350 to 2,504,730 _RS11025 BPHYT_RS11030: BPHYT_RS11030 - transporter, at 2,504,777 to 2,505,775 _RS11030 Position (kb) 2503 2504 2505Strain fitness (log2 ratio) -1 0 1at 2502.823 kb on - strandat 2503.221 kb on + strandat 2503.596 kb on + strandat 2503.832 kb on + strand, within BPHYT_RS11020at 2503.836 kb on + strand, within BPHYT_RS11020at 2503.864 kb on - strand, within BPHYT_RS11020at 2504.075 kb on - strand, within BPHYT_RS11020at 2504.730 kb on + strandat 2504.749 kb on - strandat 2504.753 kb on - strandat 2504.933 kb on + strand, within BPHYT_RS11030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
remove
2,502,823 - -0.1
2,503,221 + +0.2
2,503,596 + -0.1
2,503,832 + BPHYT_RS11020 0.31 -1.3
2,503,836 + BPHYT_RS11020 0.31 +0.1
2,503,864 - BPHYT_RS11020 0.37 -0.4
2,504,075 - BPHYT_RS11020 0.77 -0.9
2,504,730 + -0.1
2,504,749 - +0.3
2,504,753 - -0.3
2,504,933 + BPHYT_RS11030 0.16 +0.5

Or see this region's nucleotide sequence