Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01154 and SMc01153 are separated by 57 nucleotides SMc01153 and SMc01152 are separated by 191 nucleotides
SMc01154: SMc01154 - formamidopyrimidine-DNA glycosylase, at 396,210 to 397,115
SMc01154
SMc01153: SMc01153 - enoyl-CoA hydratase, at 397,173 to 397,946
SMc01153
SMc01152: SMc01152 - 30S ribosomal protein S20, at 398,138 to 398,404
SMc01152
Position (kb) 397
398 Strain fitness (log2 ratio) -2
-1
0
1
2 at 396.187 kb on + strand at 396.188 kb on - strand at 396.385 kb on - strand, within SMc01154 at 396.588 kb on + strand, within SMc01154 at 396.588 kb on + strand, within SMc01154 at 396.588 kb on + strand, within SMc01154 at 396.589 kb on - strand, within SMc01154 at 396.589 kb on - strand, within SMc01154 at 396.788 kb on + strand, within SMc01154 at 396.788 kb on + strand, within SMc01154 at 396.789 kb on - strand, within SMc01154 at 396.792 kb on + strand, within SMc01154 at 397.009 kb on - strand, within SMc01154 at 397.066 kb on + strand at 397.066 kb on + strand at 397.067 kb on - strand at 397.067 kb on - strand at 397.070 kb on - strand at 397.070 kb on - strand at 397.070 kb on - strand at 397.092 kb on + strand at 397.180 kb on - strand at 397.568 kb on + strand, within SMc01153 at 397.569 kb on - strand, within SMc01153 at 398.932 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 396,187 + +0.2 396,188 - +0.4 396,385 - SMc01154 0.19 -0.4 396,588 + SMc01154 0.42 -0.4 396,588 + SMc01154 0.42 -0.2 396,588 + SMc01154 0.42 -1.3 396,589 - SMc01154 0.42 +0.4 396,589 - SMc01154 0.42 +0.7 396,788 + SMc01154 0.64 +0.2 396,788 + SMc01154 0.64 +0.1 396,789 - SMc01154 0.64 -1.0 396,792 + SMc01154 0.64 -0.5 397,009 - SMc01154 0.88 +1.7 397,066 + -0.1 397,066 + -1.2 397,067 - +1.0 397,067 - +0.5 397,070 - +0.3 397,070 - +0.2 397,070 - -0.6 397,092 + -2.5 397,180 - +0.7 397,568 + SMc01153 0.51 +0.2 397,569 - SMc01153 0.51 +2.2 398,932 + +0.1
Or see this region's nucleotide sequence