Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07145 and RR42_RS07150 are separated by 27 nucleotides RR42_RS07150 and RR42_RS07155 are separated by 72 nucleotides RR42_RS07155 and RR42_RS07160 are separated by 59 nucleotides
RR42_RS07145: RR42_RS07145 - hypothetical protein, at 1,530,968 to 1,532,830
_RS07145
RR42_RS07150: RR42_RS07150 - hypothetical protein, at 1,532,858 to 1,533,571
_RS07150
RR42_RS07155: RR42_RS07155 - hypothetical protein, at 1,533,644 to 1,534,405
_RS07155
RR42_RS07160: RR42_RS07160 - hypothetical protein, at 1,534,465 to 1,535,247
_RS07160
Position (kb)
1532
1533
1534 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1531.884 kb on - strand, within RR42_RS07145 at 1531.884 kb on - strand, within RR42_RS07145 at 1531.937 kb on + strand, within RR42_RS07145 at 1532.013 kb on - strand, within RR42_RS07145 at 1532.457 kb on - strand, within RR42_RS07145 at 1532.474 kb on + strand, within RR42_RS07145 at 1532.475 kb on - strand, within RR42_RS07145 at 1532.768 kb on + strand at 1532.857 kb on + strand at 1533.195 kb on - strand, within RR42_RS07150 at 1533.633 kb on - strand at 1533.640 kb on - strand at 1533.640 kb on - strand at 1533.719 kb on + strand at 1533.720 kb on - strand at 1533.941 kb on - strand, within RR42_RS07155 at 1534.281 kb on - strand, within RR42_RS07155 at 1534.344 kb on - strand at 1534.429 kb on + strand at 1534.462 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,531,884 - RR42_RS07145 0.49 +1.5 1,531,884 - RR42_RS07145 0.49 -0.7 1,531,937 + RR42_RS07145 0.52 -1.8 1,532,013 - RR42_RS07145 0.56 -0.4 1,532,457 - RR42_RS07145 0.80 +0.4 1,532,474 + RR42_RS07145 0.81 -1.4 1,532,475 - RR42_RS07145 0.81 +3.6 1,532,768 + -2.2 1,532,857 + -1.2 1,533,195 - RR42_RS07150 0.47 +1.2 1,533,633 - +0.6 1,533,640 - -0.8 1,533,640 - -0.5 1,533,719 + +0.1 1,533,720 - +0.1 1,533,941 - RR42_RS07155 0.39 +0.2 1,534,281 - RR42_RS07155 0.84 -0.3 1,534,344 - +0.8 1,534,429 + -1.2 1,534,462 - -0.8
Or see this region's nucleotide sequence