Strain Fitness in Pseudomonas sp. RS175 around PFR28_00806

Experiment: Xanthosine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00804 and PFR28_00805 are separated by 49 nucleotidesPFR28_00805 and PFR28_00806 are separated by 48 nucleotidesPFR28_00806 and PFR28_00807 are separated by 9 nucleotides PFR28_00804: PFR28_00804 - Flagellar basal-body rod protein FlgF, at 871,995 to 872,732 _00804 PFR28_00805: PFR28_00805 - Flagellar basal-body rod protein FlgG, at 872,782 to 873,567 _00805 PFR28_00806: PFR28_00806 - Flagellar L-ring protein, at 873,616 to 874,311 _00806 PFR28_00807: PFR28_00807 - Flagellar P-ring protein, at 874,321 to 875,427 _00807 Position (kb) 873 874 875Strain fitness (log2 ratio) -2 -1 0 1 2at 872.730 kb on + strandat 872.730 kb on + strandat 872.731 kb on - strandat 872.731 kb on - strandat 872.731 kb on - strandat 872.731 kb on - strandat 872.737 kb on + strandat 872.737 kb on + strandat 872.737 kb on + strandat 872.737 kb on + strandat 872.738 kb on - strandat 872.738 kb on - strandat 872.738 kb on - strandat 872.738 kb on - strandat 872.738 kb on - strandat 872.738 kb on - strandat 872.741 kb on + strandat 872.741 kb on + strandat 872.767 kb on + strandat 872.795 kb on + strandat 872.795 kb on + strandat 872.796 kb on - strandat 872.917 kb on + strand, within PFR28_00805at 872.917 kb on + strand, within PFR28_00805at 872.918 kb on - strand, within PFR28_00805at 872.918 kb on - strand, within PFR28_00805at 872.988 kb on + strand, within PFR28_00805at 873.121 kb on + strand, within PFR28_00805at 873.121 kb on + strand, within PFR28_00805at 873.121 kb on + strand, within PFR28_00805at 873.121 kb on + strand, within PFR28_00805at 873.121 kb on + strand, within PFR28_00805at 873.121 kb on + strand, within PFR28_00805at 873.121 kb on + strand, within PFR28_00805at 873.122 kb on - strand, within PFR28_00805at 873.122 kb on - strand, within PFR28_00805at 873.122 kb on - strand, within PFR28_00805at 873.122 kb on - strand, within PFR28_00805at 873.135 kb on + strand, within PFR28_00805at 873.135 kb on + strand, within PFR28_00805at 873.135 kb on + strand, within PFR28_00805at 873.135 kb on + strand, within PFR28_00805at 873.136 kb on - strand, within PFR28_00805at 873.136 kb on - strand, within PFR28_00805at 873.566 kb on - strandat 873.603 kb on + strandat 873.603 kb on + strandat 873.603 kb on + strandat 873.603 kb on + strandat 873.604 kb on - strandat 873.604 kb on - strandat 873.604 kb on - strandat 873.609 kb on + strandat 873.610 kb on - strandat 873.610 kb on - strandat 873.610 kb on - strandat 873.610 kb on - strandat 873.610 kb on - strandat 873.629 kb on + strandat 873.629 kb on + strandat 873.629 kb on + strandat 873.629 kb on + strandat 873.629 kb on + strandat 873.629 kb on + strandat 873.629 kb on + strandat 873.630 kb on - strandat 873.630 kb on - strandat 873.630 kb on - strandat 873.630 kb on - strandat 873.630 kb on - strandat 873.630 kb on - strandat 873.682 kb on - strandat 873.703 kb on + strand, within PFR28_00806at 873.704 kb on - strand, within PFR28_00806at 873.704 kb on - strand, within PFR28_00806at 873.704 kb on - strand, within PFR28_00806at 873.706 kb on + strand, within PFR28_00806at 873.706 kb on + strand, within PFR28_00806at 873.706 kb on + strand, within PFR28_00806at 873.706 kb on + strand, within PFR28_00806at 873.706 kb on + strand, within PFR28_00806at 873.706 kb on + strand, within PFR28_00806at 873.706 kb on + strand, within PFR28_00806at 873.707 kb on - strand, within PFR28_00806at 873.707 kb on - strand, within PFR28_00806at 873.707 kb on - strand, within PFR28_00806at 873.707 kb on - strand, within PFR28_00806at 873.764 kb on - strand, within PFR28_00806at 873.764 kb on - strand, within PFR28_00806at 873.791 kb on - strand, within PFR28_00806at 873.912 kb on + strand, within PFR28_00806at 874.147 kb on - strand, within PFR28_00806at 874.224 kb on + strand, within PFR28_00806at 874.224 kb on + strand, within PFR28_00806at 874.224 kb on + strand, within PFR28_00806at 874.224 kb on + strand, within PFR28_00806at 874.224 kb on + strand, within PFR28_00806at 874.224 kb on + strand, within PFR28_00806at 874.225 kb on - strand, within PFR28_00806at 874.225 kb on - strand, within PFR28_00806at 874.225 kb on - strand, within PFR28_00806at 874.225 kb on - strand, within PFR28_00806at 874.225 kb on - strand, within PFR28_00806at 874.225 kb on - strand, within PFR28_00806at 874.228 kb on + strand, within PFR28_00806at 874.228 kb on + strand, within PFR28_00806at 874.228 kb on + strand, within PFR28_00806at 874.228 kb on + strand, within PFR28_00806at 874.229 kb on - strand, within PFR28_00806at 874.229 kb on - strand, within PFR28_00806at 874.309 kb on + strandat 874.309 kb on + strandat 874.309 kb on + strandat 874.310 kb on - strandat 874.310 kb on - strandat 874.310 kb on - strandat 874.310 kb on - strandat 874.310 kb on - strandat 874.329 kb on + strandat 874.329 kb on + strandat 874.329 kb on + strandat 874.330 kb on - strandat 874.330 kb on - strandat 874.663 kb on - strand, within PFR28_00807at 874.663 kb on - strand, within PFR28_00807at 874.730 kb on - strand, within PFR28_00807at 874.730 kb on - strand, within PFR28_00807at 875.035 kb on + strand, within PFR28_00807at 875.035 kb on + strand, within PFR28_00807at 875.035 kb on + strand, within PFR28_00807at 875.035 kb on + strand, within PFR28_00807at 875.035 kb on + strand, within PFR28_00807at 875.035 kb on + strand, within PFR28_00807at 875.036 kb on - strand, within PFR28_00807at 875.036 kb on - strand, within PFR28_00807

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthosine (C) 10 mM
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872,730 + -1.4
872,730 + -0.8
872,731 - +0.3
872,731 - +0.9
872,731 - +1.4
872,731 - +0.3
872,737 + -0.3
872,737 + +0.6
872,737 + -0.5
872,737 + +1.3
872,738 - +1.2
872,738 - +1.0
872,738 - -0.2
872,738 - +0.5
872,738 - +0.8
872,738 - +0.5
872,741 + +0.8
872,741 + +0.8
872,767 + +0.2
872,795 + +1.1
872,795 + +0.9
872,796 - +1.0
872,917 + PFR28_00805 0.17 +0.7
872,917 + PFR28_00805 0.17 +1.0
872,918 - PFR28_00805 0.17 +1.0
872,918 - PFR28_00805 0.17 +0.6
872,988 + PFR28_00805 0.26 +1.4
873,121 + PFR28_00805 0.43 +1.2
873,121 + PFR28_00805 0.43 +1.0
873,121 + PFR28_00805 0.43 +0.6
873,121 + PFR28_00805 0.43 +0.9
873,121 + PFR28_00805 0.43 +0.3
873,121 + PFR28_00805 0.43 +1.0
873,121 + PFR28_00805 0.43 +0.8
873,122 - PFR28_00805 0.43 +1.2
873,122 - PFR28_00805 0.43 +0.4
873,122 - PFR28_00805 0.43 +0.5
873,122 - PFR28_00805 0.43 +2.0
873,135 + PFR28_00805 0.45 +0.9
873,135 + PFR28_00805 0.45 +1.1
873,135 + PFR28_00805 0.45 -1.0
873,135 + PFR28_00805 0.45 +0.9
873,136 - PFR28_00805 0.45 -0.1
873,136 - PFR28_00805 0.45 +1.0
873,566 - +0.2
873,603 + +0.4
873,603 + +0.3
873,603 + -0.2
873,603 + -0.8
873,604 - +1.1
873,604 - +0.7
873,604 - +1.1
873,609 + +0.7
873,610 - -1.2
873,610 - +1.5
873,610 - +1.2
873,610 - +0.8
873,610 - +1.0
873,629 + +0.6
873,629 + +1.0
873,629 + +1.1
873,629 + +0.2
873,629 + +1.2
873,629 + +0.4
873,629 + -0.7
873,630 - +1.6
873,630 - +1.8
873,630 - +1.6
873,630 - +1.4
873,630 - +1.6
873,630 - +2.3
873,682 - +1.2
873,703 + PFR28_00806 0.12 +0.6
873,704 - PFR28_00806 0.13 +0.6
873,704 - PFR28_00806 0.13 +0.4
873,704 - PFR28_00806 0.13 -0.7
873,706 + PFR28_00806 0.13 +0.9
873,706 + PFR28_00806 0.13 +0.3
873,706 + PFR28_00806 0.13 +1.7
873,706 + PFR28_00806 0.13 +0.6
873,706 + PFR28_00806 0.13 +0.9
873,706 + PFR28_00806 0.13 +0.6
873,706 + PFR28_00806 0.13 +1.0
873,707 - PFR28_00806 0.13 +0.8
873,707 - PFR28_00806 0.13 +0.1
873,707 - PFR28_00806 0.13 +0.3
873,707 - PFR28_00806 0.13 +0.6
873,764 - PFR28_00806 0.21 +0.2
873,764 - PFR28_00806 0.21 +0.4
873,791 - PFR28_00806 0.25 +0.7
873,912 + PFR28_00806 0.43 -0.5
874,147 - PFR28_00806 0.76 +1.3
874,224 + PFR28_00806 0.87 -0.6
874,224 + PFR28_00806 0.87 +0.4
874,224 + PFR28_00806 0.87 +1.3
874,224 + PFR28_00806 0.87 +0.0
874,224 + PFR28_00806 0.87 +1.6
874,224 + PFR28_00806 0.87 +1.2
874,225 - PFR28_00806 0.88 +1.0
874,225 - PFR28_00806 0.88 +1.3
874,225 - PFR28_00806 0.88 +0.4
874,225 - PFR28_00806 0.88 +1.9
874,225 - PFR28_00806 0.88 +1.2
874,225 - PFR28_00806 0.88 +1.5
874,228 + PFR28_00806 0.88 -2.7
874,228 + PFR28_00806 0.88 +0.2
874,228 + PFR28_00806 0.88 -0.3
874,228 + PFR28_00806 0.88 +1.0
874,229 - PFR28_00806 0.88 -0.2
874,229 - PFR28_00806 0.88 +0.6
874,309 + -0.1
874,309 + -1.2
874,309 + +0.1
874,310 - +0.5
874,310 - +1.2
874,310 - +0.6
874,310 - +0.4
874,310 - +0.4
874,329 + +0.6
874,329 + +1.1
874,329 + +0.2
874,330 - +0.9
874,330 - +0.9
874,663 - PFR28_00807 0.31 +0.9
874,663 - PFR28_00807 0.31 +0.1
874,730 - PFR28_00807 0.37 +0.9
874,730 - PFR28_00807 0.37 +0.3
875,035 + PFR28_00807 0.64 +0.9
875,035 + PFR28_00807 0.64 +0.8
875,035 + PFR28_00807 0.64 +0.8
875,035 + PFR28_00807 0.64 -0.2
875,035 + PFR28_00807 0.64 +0.3
875,035 + PFR28_00807 0.64 +0.7
875,036 - PFR28_00807 0.65 +1.0
875,036 - PFR28_00807 0.65 +1.0

Or see this region's nucleotide sequence