Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4456

Experiment: m.b. Dimethyl Sulfoxide 12 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4455 and Echvi_4456 are separated by 852 nucleotidesEchvi_4456 and Echvi_4457 are separated by 277 nucleotides Echvi_4455: Echvi_4455 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 5,330,907 to 5,331,491 _4455 Echvi_4456: Echvi_4456 - Transposase DDE domain., at 5,332,344 to 5,333,663 _4456 Echvi_4457: Echvi_4457 - heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase, at 5,333,941 to 5,335,899 _4457 Position (kb) 5332 5333 5334Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5331.393 kb on + strand, within Echvi_4455at 5331.393 kb on + strand, within Echvi_4455at 5331.393 kb on + strand, within Echvi_4455at 5331.394 kb on - strand, within Echvi_4455at 5331.439 kb on + strandat 5331.446 kb on + strandat 5331.446 kb on + strandat 5331.446 kb on + strandat 5331.446 kb on + strandat 5331.447 kb on - strandat 5331.490 kb on - strandat 5331.503 kb on + strandat 5331.523 kb on + strandat 5331.531 kb on - strandat 5331.586 kb on + strandat 5331.641 kb on - strandat 5331.646 kb on + strandat 5331.685 kb on + strandat 5331.685 kb on + strandat 5331.686 kb on - strandat 5331.686 kb on - strandat 5331.717 kb on + strandat 5331.735 kb on - strandat 5331.824 kb on + strandat 5331.954 kb on - strandat 5331.964 kb on - strandat 5331.964 kb on - strandat 5332.124 kb on - strandat 5332.126 kb on - strandat 5332.133 kb on + strandat 5332.195 kb on - strandat 5332.198 kb on - strandat 5332.320 kb on + strandat 5332.320 kb on + strandat 5332.321 kb on - strandat 5332.322 kb on + strandat 5332.322 kb on + strandat 5332.322 kb on + strandat 5332.322 kb on + strandat 5332.323 kb on - strandat 5332.323 kb on - strandat 5332.323 kb on - strandat 5332.323 kb on - strandat 5332.326 kb on + strandat 5332.326 kb on + strandat 5332.360 kb on - strandat 5332.434 kb on + strandat 5332.435 kb on - strandat 5332.527 kb on - strand, within Echvi_4456at 5332.642 kb on - strand, within Echvi_4456at 5332.742 kb on - strandat 5332.831 kb on + strand, within Echvi_4456at 5332.832 kb on - strand, within Echvi_4456at 5332.865 kb on - strand, within Echvi_4456at 5333.020 kb on + strand, within Echvi_4456at 5333.021 kb on - strand, within Echvi_4456at 5333.021 kb on - strand, within Echvi_4456at 5333.041 kb on + strand, within Echvi_4456at 5333.057 kb on + strand, within Echvi_4456at 5333.058 kb on - strand, within Echvi_4456at 5333.073 kb on + strand, within Echvi_4456at 5333.100 kb on + strand, within Echvi_4456at 5333.100 kb on + strand, within Echvi_4456at 5333.101 kb on - strand, within Echvi_4456at 5333.101 kb on - strand, within Echvi_4456at 5333.101 kb on - strand, within Echvi_4456at 5333.125 kb on + strand, within Echvi_4456at 5333.162 kb on + strand, within Echvi_4456at 5333.193 kb on - strand, within Echvi_4456at 5333.216 kb on + strand, within Echvi_4456at 5333.441 kb on - strandat 5333.549 kb on - strandat 5333.561 kb on - strandat 5333.567 kb on + strandat 5333.567 kb on + strandat 5333.568 kb on - strandat 5333.568 kb on - strandat 5333.568 kb on - strandat 5333.569 kb on + strandat 5333.569 kb on + strandat 5333.569 kb on + strandat 5333.569 kb on + strandat 5333.569 kb on + strandat 5333.569 kb on + strandat 5333.569 kb on + strandat 5333.569 kb on + strandat 5333.570 kb on - strandat 5333.570 kb on - strandat 5333.570 kb on - strandat 5333.570 kb on - strandat 5333.580 kb on + strandat 5333.580 kb on + strandat 5333.581 kb on - strandat 5333.586 kb on + strandat 5333.587 kb on - strandat 5333.587 kb on - strandat 5333.652 kb on - strandat 5333.699 kb on - strandat 5333.699 kb on - strandat 5333.751 kb on - strandat 5333.869 kb on + strandat 5333.883 kb on - strandat 5333.901 kb on + strandat 5333.916 kb on - strandat 5333.918 kb on - strandat 5333.922 kb on - strandat 5333.942 kb on + strandat 5334.121 kb on + strandat 5334.121 kb on + strandat 5334.136 kb on - strandat 5334.223 kb on + strand, within Echvi_4457at 5334.224 kb on - strand, within Echvi_4457at 5334.354 kb on + strand, within Echvi_4457at 5334.355 kb on - strand, within Echvi_4457at 5334.358 kb on + strand, within Echvi_4457at 5334.359 kb on - strand, within Echvi_4457at 5334.359 kb on - strand, within Echvi_4457at 5334.523 kb on + strand, within Echvi_4457at 5334.537 kb on + strand, within Echvi_4457at 5334.538 kb on - strand, within Echvi_4457at 5334.567 kb on + strand, within Echvi_4457at 5334.618 kb on + strand, within Echvi_4457at 5334.619 kb on - strand, within Echvi_4457at 5334.625 kb on + strand, within Echvi_4457

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol%
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5,331,393 + Echvi_4455 0.83 -0.2
5,331,393 + Echvi_4455 0.83 +0.0
5,331,393 + Echvi_4455 0.83 +0.1
5,331,394 - Echvi_4455 0.83 +0.4
5,331,439 + +0.3
5,331,446 + +0.3
5,331,446 + -0.0
5,331,446 + +0.6
5,331,446 + -0.6
5,331,447 - +0.8
5,331,490 - -0.7
5,331,503 + +0.4
5,331,523 + -1.1
5,331,531 - -0.9
5,331,586 + -0.4
5,331,641 - +0.3
5,331,646 + +1.5
5,331,685 + -0.7
5,331,685 + -0.1
5,331,686 - +1.0
5,331,686 - -0.4
5,331,717 + -1.5
5,331,735 - +0.1
5,331,824 + +0.9
5,331,954 - -0.8
5,331,964 - +3.2
5,331,964 - +0.6
5,332,124 - +0.9
5,332,126 - -0.1
5,332,133 + +0.2
5,332,195 - +0.6
5,332,198 - -1.3
5,332,320 + +0.5
5,332,320 + -1.4
5,332,321 - -0.0
5,332,322 + -0.4
5,332,322 + -0.2
5,332,322 + +2.2
5,332,322 + +0.4
5,332,323 - -1.4
5,332,323 - -0.1
5,332,323 - -1.3
5,332,323 - +2.9
5,332,326 + -1.0
5,332,326 + +0.1
5,332,360 - -0.3
5,332,434 + -0.2
5,332,435 - +0.3
5,332,527 - Echvi_4456 0.14 -0.2
5,332,642 - Echvi_4456 0.23 +0.4
5,332,742 - +0.9
5,332,831 + Echvi_4456 0.37 +1.3
5,332,832 - Echvi_4456 0.37 +0.1
5,332,865 - Echvi_4456 0.39 +1.9
5,333,020 + Echvi_4456 0.51 -0.3
5,333,021 - Echvi_4456 0.51 +0.4
5,333,021 - Echvi_4456 0.51 +0.1
5,333,041 + Echvi_4456 0.53 -0.3
5,333,057 + Echvi_4456 0.54 +0.6
5,333,058 - Echvi_4456 0.54 -0.1
5,333,073 + Echvi_4456 0.55 +0.5
5,333,100 + Echvi_4456 0.57 -0.3
5,333,100 + Echvi_4456 0.57 +0.8
5,333,101 - Echvi_4456 0.57 +0.2
5,333,101 - Echvi_4456 0.57 +2.9
5,333,101 - Echvi_4456 0.57 -0.4
5,333,125 + Echvi_4456 0.59 +0.9
5,333,162 + Echvi_4456 0.62 +0.2
5,333,193 - Echvi_4456 0.64 +0.0
5,333,216 + Echvi_4456 0.66 +0.4
5,333,441 - +3.5
5,333,549 - +0.3
5,333,561 - +0.4
5,333,567 + -0.5
5,333,567 + +0.1
5,333,568 - -1.8
5,333,568 - +0.6
5,333,568 - -0.1
5,333,569 + -0.1
5,333,569 + -0.1
5,333,569 + -0.0
5,333,569 + +0.3
5,333,569 + -1.0
5,333,569 + +2.9
5,333,569 + +0.1
5,333,569 + -0.2
5,333,570 - +0.6
5,333,570 - -0.9
5,333,570 - +0.1
5,333,570 - +1.9
5,333,580 + +0.4
5,333,580 + -0.4
5,333,581 - -3.0
5,333,586 + -1.0
5,333,587 - +0.0
5,333,587 - +0.9
5,333,652 - +1.3
5,333,699 - -0.3
5,333,699 - +1.4
5,333,751 - -0.7
5,333,869 + +0.8
5,333,883 - -0.3
5,333,901 + -0.4
5,333,916 - +0.4
5,333,918 - -0.9
5,333,922 - +0.9
5,333,942 + -0.8
5,334,121 + -0.1
5,334,121 + -0.4
5,334,136 - +0.4
5,334,223 + Echvi_4457 0.14 +0.4
5,334,224 - Echvi_4457 0.14 +1.3
5,334,354 + Echvi_4457 0.21 -0.0
5,334,355 - Echvi_4457 0.21 +1.3
5,334,358 + Echvi_4457 0.21 -0.0
5,334,359 - Echvi_4457 0.21 -0.6
5,334,359 - Echvi_4457 0.21 +1.9
5,334,523 + Echvi_4457 0.30 +0.5
5,334,537 + Echvi_4457 0.30 +0.5
5,334,538 - Echvi_4457 0.30 -0.5
5,334,567 + Echvi_4457 0.32 -0.8
5,334,618 + Echvi_4457 0.35 -0.3
5,334,619 - Echvi_4457 0.35 +0.2
5,334,625 + Echvi_4457 0.35 -0.1

Or see this region's nucleotide sequence