Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2423

Experiment: m.b. Dimethyl Sulfoxide 12 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2422 and Echvi_2423 are separated by 226 nucleotidesEchvi_2423 and Echvi_2424 are separated by 53 nucleotidesEchvi_2424 and Echvi_2425 are separated by 209 nucleotides Echvi_2422: Echvi_2422 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 2,873,600 to 2,874,982 _2422 Echvi_2423: Echvi_2423 - FKBP-type peptidyl-prolyl cis-trans isomerases 2, at 2,875,209 to 2,875,637 _2423 Echvi_2424: Echvi_2424 - hypothetical protein, at 2,875,691 to 2,876,167 _2424 Echvi_2425: Echvi_2425 - hypothetical protein, at 2,876,377 to 2,877,207 _2425 Position (kb) 2875 2876Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2874.347 kb on + strand, within Echvi_2422at 2874.359 kb on + strand, within Echvi_2422at 2874.434 kb on + strand, within Echvi_2422at 2874.434 kb on + strand, within Echvi_2422at 2874.568 kb on + strand, within Echvi_2422at 2874.568 kb on + strand, within Echvi_2422at 2874.585 kb on + strand, within Echvi_2422at 2874.585 kb on + strand, within Echvi_2422at 2874.595 kb on + strand, within Echvi_2422at 2874.595 kb on + strand, within Echvi_2422at 2874.614 kb on + strand, within Echvi_2422at 2874.650 kb on + strand, within Echvi_2422at 2874.651 kb on - strand, within Echvi_2422at 2874.698 kb on + strand, within Echvi_2422at 2874.819 kb on - strand, within Echvi_2422at 2874.881 kb on - strandat 2874.884 kb on + strandat 2874.885 kb on - strandat 2874.893 kb on - strandat 2874.957 kb on - strandat 2875.173 kb on + strandat 2875.203 kb on + strandat 2875.206 kb on + strandat 2875.206 kb on + strandat 2875.216 kb on + strandat 2875.237 kb on + strandat 2875.256 kb on + strand, within Echvi_2423at 2875.319 kb on - strand, within Echvi_2423at 2875.382 kb on + strand, within Echvi_2423at 2875.383 kb on - strand, within Echvi_2423at 2875.413 kb on + strand, within Echvi_2423at 2875.413 kb on + strand, within Echvi_2423at 2875.413 kb on + strand, within Echvi_2423at 2875.413 kb on + strand, within Echvi_2423at 2875.414 kb on - strand, within Echvi_2423at 2875.414 kb on - strand, within Echvi_2423at 2875.414 kb on - strand, within Echvi_2423at 2875.421 kb on + strand, within Echvi_2423at 2875.433 kb on + strand, within Echvi_2423at 2875.475 kb on + strand, within Echvi_2423at 2875.476 kb on - strand, within Echvi_2423at 2875.486 kb on + strand, within Echvi_2423at 2875.487 kb on - strand, within Echvi_2423at 2875.544 kb on - strand, within Echvi_2423at 2875.606 kb on + strandat 2875.631 kb on - strandat 2875.631 kb on - strandat 2875.700 kb on + strandat 2875.705 kb on + strandat 2875.705 kb on + strandat 2875.779 kb on + strand, within Echvi_2424at 2875.780 kb on - strand, within Echvi_2424at 2875.780 kb on - strand, within Echvi_2424at 2875.780 kb on - strand, within Echvi_2424at 2875.795 kb on + strand, within Echvi_2424at 2875.796 kb on - strand, within Echvi_2424at 2875.801 kb on - strand, within Echvi_2424at 2875.841 kb on - strand, within Echvi_2424at 2876.045 kb on - strand, within Echvi_2424at 2876.080 kb on - strand, within Echvi_2424at 2876.134 kb on + strandat 2876.135 kb on - strandat 2876.138 kb on + strandat 2876.138 kb on + strandat 2876.138 kb on + strandat 2876.138 kb on + strandat 2876.138 kb on + strandat 2876.138 kb on + strandat 2876.139 kb on - strandat 2876.139 kb on - strandat 2876.139 kb on - strandat 2876.139 kb on - strandat 2876.153 kb on + strandat 2876.281 kb on + strandat 2876.369 kb on - strandat 2876.412 kb on + strandat 2876.412 kb on + strandat 2876.412 kb on + strandat 2876.413 kb on - strandat 2876.414 kb on + strandat 2876.415 kb on - strandat 2876.415 kb on - strandat 2876.509 kb on - strand, within Echvi_2425at 2876.519 kb on + strand, within Echvi_2425at 2876.519 kb on + strand, within Echvi_2425at 2876.519 kb on + strand, within Echvi_2425at 2876.519 kb on + strand, within Echvi_2425at 2876.550 kb on + strand, within Echvi_2425at 2876.550 kb on + strand, within Echvi_2425at 2876.550 kb on + strand, within Echvi_2425at 2876.551 kb on - strand, within Echvi_2425at 2876.554 kb on + strand, within Echvi_2425at 2876.595 kb on + strand, within Echvi_2425at 2876.613 kb on + strand, within Echvi_2425at 2876.636 kb on - strand, within Echvi_2425

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol%
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2,874,347 + Echvi_2422 0.54 -0.2
2,874,359 + Echvi_2422 0.55 -0.0
2,874,434 + Echvi_2422 0.60 +1.0
2,874,434 + Echvi_2422 0.60 +0.2
2,874,568 + Echvi_2422 0.70 -0.1
2,874,568 + Echvi_2422 0.70 +0.6
2,874,585 + Echvi_2422 0.71 +0.8
2,874,585 + Echvi_2422 0.71 -1.2
2,874,595 + Echvi_2422 0.72 -0.4
2,874,595 + Echvi_2422 0.72 -0.4
2,874,614 + Echvi_2422 0.73 -0.6
2,874,650 + Echvi_2422 0.76 -1.6
2,874,651 - Echvi_2422 0.76 -0.9
2,874,698 + Echvi_2422 0.79 +0.2
2,874,819 - Echvi_2422 0.88 -2.1
2,874,881 - +0.4
2,874,884 + +1.5
2,874,885 - -1.5
2,874,893 - -0.2
2,874,957 - -0.2
2,875,173 + -0.1
2,875,203 + -0.1
2,875,206 + -1.3
2,875,206 + +0.8
2,875,216 + -0.7
2,875,237 + +0.4
2,875,256 + Echvi_2423 0.11 +0.5
2,875,319 - Echvi_2423 0.26 -0.3
2,875,382 + Echvi_2423 0.40 +0.4
2,875,383 - Echvi_2423 0.41 +0.7
2,875,413 + Echvi_2423 0.48 -0.3
2,875,413 + Echvi_2423 0.48 +1.8
2,875,413 + Echvi_2423 0.48 +0.9
2,875,413 + Echvi_2423 0.48 -0.1
2,875,414 - Echvi_2423 0.48 +0.1
2,875,414 - Echvi_2423 0.48 +0.6
2,875,414 - Echvi_2423 0.48 +0.6
2,875,421 + Echvi_2423 0.49 +0.4
2,875,433 + Echvi_2423 0.52 +0.1
2,875,475 + Echvi_2423 0.62 +0.2
2,875,476 - Echvi_2423 0.62 -1.6
2,875,486 + Echvi_2423 0.65 +1.8
2,875,487 - Echvi_2423 0.65 -0.8
2,875,544 - Echvi_2423 0.78 +0.7
2,875,606 + -0.3
2,875,631 - +0.7
2,875,631 - -0.4
2,875,700 + +1.7
2,875,705 + -0.7
2,875,705 + -1.7
2,875,779 + Echvi_2424 0.18 -0.7
2,875,780 - Echvi_2424 0.19 -0.7
2,875,780 - Echvi_2424 0.19 -0.7
2,875,780 - Echvi_2424 0.19 +0.4
2,875,795 + Echvi_2424 0.22 +0.7
2,875,796 - Echvi_2424 0.22 +0.1
2,875,801 - Echvi_2424 0.23 +3.4
2,875,841 - Echvi_2424 0.31 -0.2
2,876,045 - Echvi_2424 0.74 +0.9
2,876,080 - Echvi_2424 0.82 +0.8
2,876,134 + +1.4
2,876,135 - +0.7
2,876,138 + +0.9
2,876,138 + -0.4
2,876,138 + +0.7
2,876,138 + -1.5
2,876,138 + +0.3
2,876,138 + -1.2
2,876,139 - +1.2
2,876,139 - +1.2
2,876,139 - -0.1
2,876,139 - +0.8
2,876,153 + +0.4
2,876,281 + -0.9
2,876,369 - +0.4
2,876,412 + +1.0
2,876,412 + -0.4
2,876,412 + +1.8
2,876,413 - +1.0
2,876,414 + -0.7
2,876,415 - +0.5
2,876,415 - -0.9
2,876,509 - Echvi_2425 0.16 -0.8
2,876,519 + Echvi_2425 0.17 -0.0
2,876,519 + Echvi_2425 0.17 +0.8
2,876,519 + Echvi_2425 0.17 +1.8
2,876,519 + Echvi_2425 0.17 +0.8
2,876,550 + Echvi_2425 0.21 +0.3
2,876,550 + Echvi_2425 0.21 +0.8
2,876,550 + Echvi_2425 0.21 -0.1
2,876,551 - Echvi_2425 0.21 +0.2
2,876,554 + Echvi_2425 0.21 -1.3
2,876,595 + Echvi_2425 0.26 -0.3
2,876,613 + Echvi_2425 0.28 +0.2
2,876,636 - Echvi_2425 0.31 -0.4

Or see this region's nucleotide sequence