Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0527

Experiment: m.b. Dimethyl Sulfoxide 12 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0525 and Echvi_0526 are separated by 153 nucleotidesEchvi_0526 and Echvi_0527 are separated by 93 nucleotidesEchvi_0527 and Echvi_0528 are separated by 46 nucleotidesEchvi_0528 and Echvi_0529 are separated by 8 nucleotidesEchvi_0529 and Echvi_0530 are separated by 45 nucleotidesEchvi_0530 and Echvi_0531 are separated by 8 nucleotidesEchvi_0531 and Echvi_0532 are separated by 45 nucleotidesEchvi_0532 and Echvi_0533 are separated by 48 nucleotides Echvi_0525: Echvi_0525 - hypothetical protein, at 594,458 to 595,132 _0525 Echvi_0526: Echvi_0526 - hypothetical protein, at 595,286 to 595,378 _0526 Echvi_0527: Echvi_0527 - Predicted endonuclease containing a URI domain, at 595,472 to 595,720 _0527 Echvi_0528: Echvi_0528 - tRNA, at 595,767 to 595,843 _0528 Echvi_0529: Echvi_0529 - Predicted endonuclease containing a URI domain, at 595,852 to 596,106 _0529 Echvi_0530: Echvi_0530 - tRNA, at 596,152 to 596,228 _0530 Echvi_0531: Echvi_0531 - Predicted endonuclease containing a URI domain, at 596,237 to 596,491 _0531 Echvi_0532: Echvi_0532 - tRNA, at 596,537 to 596,611 _0532 Echvi_0533: Echvi_0533 - tRNA, at 596,660 to 596,737 _0533 Position (kb) 595 596Strain fitness (log2 ratio) -2 -1 0 1 2at 594.589 kb on + strand, within Echvi_0525at 594.589 kb on + strand, within Echvi_0525at 594.592 kb on + strand, within Echvi_0525at 594.593 kb on - strand, within Echvi_0525at 594.593 kb on - strand, within Echvi_0525at 594.593 kb on - strand, within Echvi_0525at 594.607 kb on + strand, within Echvi_0525at 594.609 kb on + strand, within Echvi_0525at 594.609 kb on + strand, within Echvi_0525at 594.610 kb on - strand, within Echvi_0525at 594.612 kb on + strand, within Echvi_0525at 594.612 kb on + strand, within Echvi_0525at 594.612 kb on + strand, within Echvi_0525at 594.613 kb on - strand, within Echvi_0525at 594.614 kb on + strand, within Echvi_0525at 594.614 kb on + strand, within Echvi_0525at 594.614 kb on + strand, within Echvi_0525at 594.614 kb on + strand, within Echvi_0525at 594.614 kb on + strand, within Echvi_0525at 594.614 kb on + strand, within Echvi_0525at 594.651 kb on + strand, within Echvi_0525at 594.651 kb on + strand, within Echvi_0525at 594.651 kb on + strand, within Echvi_0525at 594.651 kb on + strand, within Echvi_0525at 594.658 kb on + strand, within Echvi_0525at 594.658 kb on + strand, within Echvi_0525at 594.658 kb on + strand, within Echvi_0525at 594.659 kb on - strand, within Echvi_0525at 594.659 kb on - strand, within Echvi_0525at 594.722 kb on + strand, within Echvi_0525at 594.780 kb on + strand, within Echvi_0525at 594.781 kb on - strand, within Echvi_0525at 594.781 kb on - strand, within Echvi_0525at 594.801 kb on - strand, within Echvi_0525at 594.814 kb on - strand, within Echvi_0525at 594.818 kb on + strand, within Echvi_0525at 594.823 kb on + strand, within Echvi_0525at 594.823 kb on + strand, within Echvi_0525at 594.823 kb on + strand, within Echvi_0525at 594.824 kb on - strand, within Echvi_0525at 594.862 kb on - strand, within Echvi_0525at 594.893 kb on - strand, within Echvi_0525at 594.913 kb on + strand, within Echvi_0525at 594.913 kb on + strand, within Echvi_0525at 594.913 kb on + strand, within Echvi_0525at 594.913 kb on + strand, within Echvi_0525at 594.916 kb on - strand, within Echvi_0525at 594.918 kb on + strand, within Echvi_0525at 594.919 kb on - strand, within Echvi_0525at 594.919 kb on - strand, within Echvi_0525at 594.984 kb on + strand, within Echvi_0525at 594.984 kb on + strand, within Echvi_0525at 594.985 kb on - strand, within Echvi_0525at 594.986 kb on + strand, within Echvi_0525at 594.986 kb on + strand, within Echvi_0525at 594.986 kb on + strand, within Echvi_0525at 594.986 kb on + strand, within Echvi_0525at 594.987 kb on - strand, within Echvi_0525at 594.987 kb on - strand, within Echvi_0525at 594.987 kb on - strand, within Echvi_0525at 595.060 kb on + strand, within Echvi_0525at 595.061 kb on - strand, within Echvi_0525at 595.073 kb on + strandat 595.073 kb on + strandat 595.073 kb on + strandat 595.074 kb on - strandat 595.086 kb on - strandat 595.110 kb on - strandat 595.113 kb on + strandat 595.114 kb on - strandat 595.114 kb on - strandat 595.114 kb on - strandat 595.140 kb on - strandat 595.142 kb on - strandat 595.175 kb on + strandat 595.176 kb on - strandat 595.176 kb on - strandat 595.179 kb on + strandat 595.183 kb on - strandat 595.183 kb on - strandat 595.183 kb on - strandat 595.183 kb on - strandat 595.185 kb on - strandat 595.227 kb on + strandat 595.227 kb on + strandat 595.231 kb on + strandat 595.231 kb on + strandat 595.232 kb on - strandat 595.233 kb on + strandat 595.233 kb on + strandat 595.233 kb on + strandat 595.234 kb on - strandat 595.235 kb on + strandat 595.235 kb on + strandat 595.239 kb on + strandat 595.239 kb on + strandat 595.245 kb on + strandat 595.254 kb on + strandat 595.254 kb on + strandat 595.255 kb on - strandat 595.255 kb on - strandat 595.259 kb on + strandat 595.259 kb on + strandat 595.263 kb on + strandat 595.263 kb on + strandat 595.276 kb on + strandat 595.276 kb on + strandat 595.285 kb on + strandat 595.285 kb on + strandat 595.286 kb on - strandat 595.373 kb on - strandat 595.376 kb on + strandat 595.376 kb on + strandat 595.376 kb on + strandat 595.376 kb on + strandat 595.376 kb on + strandat 595.377 kb on - strandat 595.377 kb on - strandat 595.377 kb on - strandat 595.393 kb on - strandat 595.431 kb on + strandat 595.468 kb on - strandat 595.474 kb on - strandat 595.480 kb on + strandat 595.484 kb on - strandat 595.484 kb on - strandat 595.520 kb on + strand, within Echvi_0527at 595.520 kb on + strand, within Echvi_0527at 595.521 kb on - strand, within Echvi_0527at 595.561 kb on - strand, within Echvi_0527at 595.572 kb on + strand, within Echvi_0527at 595.619 kb on - strand, within Echvi_0527at 595.619 kb on - strand, within Echvi_0527at 595.619 kb on - strand, within Echvi_0527at 595.622 kb on - strand, within Echvi_0527at 595.622 kb on - strand, within Echvi_0527at 595.622 kb on - strand, within Echvi_0527at 595.668 kb on - strand, within Echvi_0527at 595.668 kb on - strand, within Echvi_0527at 595.672 kb on - strand, within Echvi_0527at 595.672 kb on - strand, within Echvi_0527at 595.675 kb on - strand, within Echvi_0527at 595.675 kb on - strand, within Echvi_0527at 596.521 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 12 vol%
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594,589 + Echvi_0525 0.19 +0.4
594,589 + Echvi_0525 0.19 +0.4
594,592 + Echvi_0525 0.20 +0.8
594,593 - Echvi_0525 0.20 +0.5
594,593 - Echvi_0525 0.20 +1.7
594,593 - Echvi_0525 0.20 +0.5
594,607 + Echvi_0525 0.22 +1.0
594,609 + Echvi_0525 0.22 +0.0
594,609 + Echvi_0525 0.22 -0.3
594,610 - Echvi_0525 0.23 +1.0
594,612 + Echvi_0525 0.23 +0.0
594,612 + Echvi_0525 0.23 +0.1
594,612 + Echvi_0525 0.23 +0.3
594,613 - Echvi_0525 0.23 +0.5
594,614 + Echvi_0525 0.23 +1.5
594,614 + Echvi_0525 0.23 +0.2
594,614 + Echvi_0525 0.23 +0.6
594,614 + Echvi_0525 0.23 -0.2
594,614 + Echvi_0525 0.23 +1.6
594,614 + Echvi_0525 0.23 +0.8
594,651 + Echvi_0525 0.29 +2.5
594,651 + Echvi_0525 0.29 +0.2
594,651 + Echvi_0525 0.29 +0.0
594,651 + Echvi_0525 0.29 -0.9
594,658 + Echvi_0525 0.30 +0.5
594,658 + Echvi_0525 0.30 +1.6
594,658 + Echvi_0525 0.30 -0.1
594,659 - Echvi_0525 0.30 -1.2
594,659 - Echvi_0525 0.30 -0.3
594,722 + Echvi_0525 0.39 +0.1
594,780 + Echvi_0525 0.48 +1.2
594,781 - Echvi_0525 0.48 -0.8
594,781 - Echvi_0525 0.48 -2.3
594,801 - Echvi_0525 0.51 -0.5
594,814 - Echvi_0525 0.53 -0.1
594,818 + Echvi_0525 0.53 -0.6
594,823 + Echvi_0525 0.54 +1.4
594,823 + Echvi_0525 0.54 -0.1
594,823 + Echvi_0525 0.54 +0.3
594,824 - Echvi_0525 0.54 +0.2
594,862 - Echvi_0525 0.60 +0.3
594,893 - Echvi_0525 0.64 +0.6
594,913 + Echvi_0525 0.67 +0.2
594,913 + Echvi_0525 0.67 +0.0
594,913 + Echvi_0525 0.67 -2.4
594,913 + Echvi_0525 0.67 +0.0
594,916 - Echvi_0525 0.68 -0.2
594,918 + Echvi_0525 0.68 +1.4
594,919 - Echvi_0525 0.68 -0.4
594,919 - Echvi_0525 0.68 +2.1
594,984 + Echvi_0525 0.78 -0.8
594,984 + Echvi_0525 0.78 +0.0
594,985 - Echvi_0525 0.78 -0.4
594,986 + Echvi_0525 0.78 -0.5
594,986 + Echvi_0525 0.78 +0.8
594,986 + Echvi_0525 0.78 -0.1
594,986 + Echvi_0525 0.78 -0.8
594,987 - Echvi_0525 0.78 -0.4
594,987 - Echvi_0525 0.78 -0.2
594,987 - Echvi_0525 0.78 -1.6
595,060 + Echvi_0525 0.89 +1.2
595,061 - Echvi_0525 0.89 -1.4
595,073 + -0.0
595,073 + +0.6
595,073 + -0.8
595,074 - -0.4
595,086 - +0.0
595,110 - +0.9
595,113 + -0.3
595,114 - +0.3
595,114 - -1.7
595,114 - +0.1
595,140 - -2.6
595,142 - +0.0
595,175 + +1.3
595,176 - -1.4
595,176 - -1.1
595,179 + +0.3
595,183 - -0.8
595,183 - -0.4
595,183 - +0.1
595,183 - -0.8
595,185 - +0.7
595,227 + -0.1
595,227 + +0.5
595,231 + +0.0
595,231 + +0.5
595,232 - -0.4
595,233 + -1.9
595,233 + +0.4
595,233 + -0.3
595,234 - -0.7
595,235 + +0.8
595,235 + -1.1
595,239 + -1.6
595,239 + +0.1
595,245 + +0.9
595,254 + +0.3
595,254 + +0.7
595,255 - -1.4
595,255 - -0.2
595,259 + -0.9
595,259 + -0.1
595,263 + -0.5
595,263 + +0.2
595,276 + +0.8
595,276 + -0.0
595,285 + -1.4
595,285 + +0.1
595,286 - +0.2
595,373 - -0.1
595,376 + -0.9
595,376 + +0.9
595,376 + -0.2
595,376 + +1.3
595,376 + -0.6
595,377 - -0.7
595,377 - -0.7
595,377 - +0.7
595,393 - +1.5
595,431 + -1.6
595,468 - -0.2
595,474 - -0.5
595,480 + -0.4
595,484 - -0.0
595,484 - +0.2
595,520 + Echvi_0527 0.19 +0.0
595,520 + Echvi_0527 0.19 +0.4
595,521 - Echvi_0527 0.20 +0.4
595,561 - Echvi_0527 0.36 -0.8
595,572 + Echvi_0527 0.40 -0.2
595,619 - Echvi_0527 0.59 +0.9
595,619 - Echvi_0527 0.59 +0.9
595,619 - Echvi_0527 0.59 +0.4
595,622 - Echvi_0527 0.60 -1.3
595,622 - Echvi_0527 0.60 +0.1
595,622 - Echvi_0527 0.60 +0.4
595,668 - Echvi_0527 0.79 +1.3
595,668 - Echvi_0527 0.79 +1.0
595,672 - Echvi_0527 0.80 +0.2
595,672 - Echvi_0527 0.80 +0.2
595,675 - Echvi_0527 0.82 +0.9
595,675 - Echvi_0527 0.82 +0.2
596,521 + +0.5

Or see this region's nucleotide sequence