Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20665 and SM_b20666 are separated by 283 nucleotides SM_b20666 and SM_b20667 are separated by 16 nucleotides SM_b20667 and SM_b20668 are separated by 142 nucleotides
SM_b20665: SM_b20665 - partial transposase of insertion sequence ISRm17 protein, at 1,466,169 to 1,466,822
_b20665
SM_b20666: SM_b20666 - aldolase, at 1,467,106 to 1,467,783
_b20666
SM_b20667: SM_b20667 - LacI family transcriptional regulator, at 1,467,800 to 1,468,804
_b20667
SM_b20668: SM_b20668 - hypothetical protein, at 1,468,947 to 1,469,852
_b20668
Position (kb)
1467
1468
1469 Strain fitness (log2 ratio)
-2
-1
0
1 at 1466.963 kb on + strand at 1467.090 kb on + strand at 1467.101 kb on + strand at 1467.101 kb on + strand at 1467.101 kb on + strand at 1467.108 kb on - strand at 1467.193 kb on - strand, within SM_b20666 at 1467.228 kb on - strand, within SM_b20666 at 1467.228 kb on - strand, within SM_b20666 at 1467.329 kb on + strand, within SM_b20666 at 1467.330 kb on - strand, within SM_b20666 at 1467.387 kb on - strand, within SM_b20666 at 1467.422 kb on + strand, within SM_b20666 at 1467.423 kb on - strand, within SM_b20666 at 1467.425 kb on + strand, within SM_b20666 at 1467.425 kb on + strand, within SM_b20666 at 1467.539 kb on + strand, within SM_b20666 at 1467.539 kb on + strand, within SM_b20666 at 1467.694 kb on + strand, within SM_b20666 at 1467.695 kb on - strand, within SM_b20666 at 1467.821 kb on - strand at 1467.907 kb on + strand, within SM_b20667 at 1467.908 kb on - strand, within SM_b20667 at 1468.050 kb on + strand, within SM_b20667 at 1468.236 kb on + strand, within SM_b20667 at 1468.322 kb on + strand, within SM_b20667 at 1468.322 kb on + strand, within SM_b20667 at 1468.322 kb on + strand, within SM_b20667 at 1468.483 kb on - strand, within SM_b20667 at 1468.645 kb on - strand, within SM_b20667 at 1468.855 kb on + strand at 1469.038 kb on - strand, within SM_b20668 at 1469.224 kb on + strand, within SM_b20668 at 1469.224 kb on + strand, within SM_b20668 at 1469.225 kb on - strand, within SM_b20668 at 1469.295 kb on + strand, within SM_b20668 at 1469.296 kb on - strand, within SM_b20668 at 1469.424 kb on + strand, within SM_b20668 at 1469.558 kb on - strand, within SM_b20668 at 1469.558 kb on - strand, within SM_b20668 at 1469.558 kb on - strand, within SM_b20668 at 1469.560 kb on - strand, within SM_b20668 at 1469.635 kb on - strand, within SM_b20668 at 1469.635 kb on - strand, within SM_b20668 at 1469.635 kb on - strand, within SM_b20668 at 1469.635 kb on - strand, within SM_b20668 at 1469.691 kb on - strand, within SM_b20668 at 1469.745 kb on + strand, within SM_b20668 at 1469.745 kb on + strand, within SM_b20668 at 1469.746 kb on - strand, within SM_b20668 at 1469.746 kb on - strand, within SM_b20668 at 1469.746 kb on - strand, within SM_b20668
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 1,466,963 + -0.2 1,467,090 + -0.5 1,467,101 + +0.0 1,467,101 + -0.2 1,467,101 + +1.3 1,467,108 - -0.2 1,467,193 - SM_b20666 0.13 +0.3 1,467,228 - SM_b20666 0.18 -0.5 1,467,228 - SM_b20666 0.18 +0.2 1,467,329 + SM_b20666 0.33 +0.2 1,467,330 - SM_b20666 0.33 -0.7 1,467,387 - SM_b20666 0.41 +0.3 1,467,422 + SM_b20666 0.47 -0.7 1,467,423 - SM_b20666 0.47 -1.8 1,467,425 + SM_b20666 0.47 -0.2 1,467,425 + SM_b20666 0.47 -0.5 1,467,539 + SM_b20666 0.64 +0.1 1,467,539 + SM_b20666 0.64 -0.3 1,467,694 + SM_b20666 0.87 +0.4 1,467,695 - SM_b20666 0.87 +1.1 1,467,821 - +0.5 1,467,907 + SM_b20667 0.11 -0.1 1,467,908 - SM_b20667 0.11 -0.2 1,468,050 + SM_b20667 0.25 +0.3 1,468,236 + SM_b20667 0.43 +0.7 1,468,322 + SM_b20667 0.52 +0.4 1,468,322 + SM_b20667 0.52 +0.4 1,468,322 + SM_b20667 0.52 +0.3 1,468,483 - SM_b20667 0.68 +1.1 1,468,645 - SM_b20667 0.84 +0.2 1,468,855 + -0.3 1,469,038 - SM_b20668 0.10 +0.2 1,469,224 + SM_b20668 0.31 -0.5 1,469,224 + SM_b20668 0.31 -0.6 1,469,225 - SM_b20668 0.31 +0.1 1,469,295 + SM_b20668 0.38 +0.0 1,469,296 - SM_b20668 0.39 -0.3 1,469,424 + SM_b20668 0.53 -0.1 1,469,558 - SM_b20668 0.67 -0.3 1,469,558 - SM_b20668 0.67 +1.0 1,469,558 - SM_b20668 0.67 +0.6 1,469,560 - SM_b20668 0.68 +1.0 1,469,635 - SM_b20668 0.76 -0.0 1,469,635 - SM_b20668 0.76 +0.7 1,469,635 - SM_b20668 0.76 +0.1 1,469,635 - SM_b20668 0.76 +0.2 1,469,691 - SM_b20668 0.82 -0.6 1,469,745 + SM_b20668 0.88 -0.1 1,469,745 + SM_b20668 0.88 +0.3 1,469,746 - SM_b20668 0.88 -0.1 1,469,746 - SM_b20668 0.88 -1.2 1,469,746 - SM_b20668 0.88 -1.5
Or see this region's nucleotide sequence