Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04020

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS04015 and CA265_RS04020 overlap by 1 nucleotidesCA265_RS04020 and CA265_RS04025 are separated by 275 nucleotides CA265_RS04015: CA265_RS04015 - ABC transporter ATP-binding protein, at 959,740 to 961,941 _RS04015 CA265_RS04020: CA265_RS04020 - hypothetical protein, at 961,941 to 963,233 _RS04020 CA265_RS04025: CA265_RS04025 - glycoside hydrolase family 2, at 963,509 to 966,673 _RS04025 Position (kb) 961 962 963 964Strain fitness (log2 ratio) -2 -1 0 1 2at 960.969 kb on + strand, within CA265_RS04015at 960.971 kb on + strand, within CA265_RS04015at 960.971 kb on + strand, within CA265_RS04015at 960.993 kb on + strand, within CA265_RS04015at 961.004 kb on + strand, within CA265_RS04015at 961.005 kb on - strand, within CA265_RS04015at 961.045 kb on + strand, within CA265_RS04015at 961.046 kb on - strand, within CA265_RS04015at 961.046 kb on - strand, within CA265_RS04015at 961.061 kb on + strand, within CA265_RS04015at 961.061 kb on + strand, within CA265_RS04015at 961.061 kb on + strand, within CA265_RS04015at 961.082 kb on + strand, within CA265_RS04015at 961.082 kb on + strand, within CA265_RS04015at 961.095 kb on - strand, within CA265_RS04015at 961.125 kb on - strand, within CA265_RS04015at 961.212 kb on + strand, within CA265_RS04015at 961.263 kb on - strand, within CA265_RS04015at 961.283 kb on + strand, within CA265_RS04015at 961.333 kb on - strand, within CA265_RS04015at 961.333 kb on - strand, within CA265_RS04015at 961.352 kb on + strand, within CA265_RS04015at 961.353 kb on - strand, within CA265_RS04015at 961.353 kb on - strand, within CA265_RS04015at 961.389 kb on + strand, within CA265_RS04015at 961.423 kb on + strand, within CA265_RS04015at 961.498 kb on - strand, within CA265_RS04015at 961.553 kb on + strand, within CA265_RS04015at 961.578 kb on + strand, within CA265_RS04015at 961.584 kb on - strand, within CA265_RS04015at 961.672 kb on + strand, within CA265_RS04015at 961.719 kb on - strand, within CA265_RS04015at 961.740 kb on - strandat 961.785 kb on - strandat 961.807 kb on - strandat 961.807 kb on - strandat 961.829 kb on + strandat 961.830 kb on - strandat 961.836 kb on - strandat 961.856 kb on + strandat 961.867 kb on - strandat 961.974 kb on + strandat 961.981 kb on + strandat 962.003 kb on + strandat 962.053 kb on + strandat 962.140 kb on + strand, within CA265_RS04020at 962.141 kb on - strand, within CA265_RS04020at 962.160 kb on + strand, within CA265_RS04020at 962.161 kb on - strand, within CA265_RS04020at 962.162 kb on + strand, within CA265_RS04020at 962.212 kb on - strand, within CA265_RS04020at 962.380 kb on - strand, within CA265_RS04020at 962.405 kb on - strand, within CA265_RS04020at 962.409 kb on + strand, within CA265_RS04020at 962.411 kb on + strand, within CA265_RS04020at 962.411 kb on + strand, within CA265_RS04020at 962.411 kb on + strand, within CA265_RS04020at 962.412 kb on - strand, within CA265_RS04020at 962.413 kb on + strand, within CA265_RS04020at 962.413 kb on + strand, within CA265_RS04020at 962.437 kb on - strand, within CA265_RS04020at 962.459 kb on - strand, within CA265_RS04020at 962.473 kb on + strand, within CA265_RS04020at 962.605 kb on - strand, within CA265_RS04020at 962.607 kb on - strand, within CA265_RS04020at 962.625 kb on + strand, within CA265_RS04020at 962.626 kb on - strand, within CA265_RS04020at 962.637 kb on - strand, within CA265_RS04020at 962.671 kb on + strand, within CA265_RS04020at 962.726 kb on + strand, within CA265_RS04020at 962.727 kb on - strand, within CA265_RS04020at 962.772 kb on - strand, within CA265_RS04020at 962.772 kb on - strand, within CA265_RS04020at 962.774 kb on - strand, within CA265_RS04020at 962.838 kb on - strand, within CA265_RS04020at 962.873 kb on - strand, within CA265_RS04020at 962.935 kb on - strand, within CA265_RS04020at 962.948 kb on + strand, within CA265_RS04020at 963.042 kb on + strand, within CA265_RS04020at 963.043 kb on - strand, within CA265_RS04020at 963.080 kb on - strand, within CA265_RS04020at 963.263 kb on + strandat 963.264 kb on - strandat 963.465 kb on - strandat 963.465 kb on - strandat 963.487 kb on + strandat 963.498 kb on - strandat 963.500 kb on - strandat 963.543 kb on + strandat 963.670 kb on + strandat 963.757 kb on + strandat 963.830 kb on - strand, within CA265_RS04025at 963.855 kb on + strand, within CA265_RS04025at 963.888 kb on + strand, within CA265_RS04025at 963.931 kb on + strand, within CA265_RS04025at 963.931 kb on + strand, within CA265_RS04025at 963.932 kb on - strand, within CA265_RS04025at 964.008 kb on + strand, within CA265_RS04025at 964.008 kb on + strand, within CA265_RS04025at 964.009 kb on - strand, within CA265_RS04025at 964.063 kb on + strand, within CA265_RS04025at 964.063 kb on + strand, within CA265_RS04025at 964.064 kb on - strand, within CA265_RS04025at 964.073 kb on - strand, within CA265_RS04025at 964.076 kb on - strand, within CA265_RS04025at 964.076 kb on - strand, within CA265_RS04025at 964.107 kb on - strand, within CA265_RS04025at 964.145 kb on + strand, within CA265_RS04025at 964.146 kb on - strand, within CA265_RS04025at 964.146 kb on - strand, within CA265_RS04025at 964.167 kb on - strand, within CA265_RS04025at 964.204 kb on - strand, within CA265_RS04025at 964.204 kb on - strand, within CA265_RS04025at 964.218 kb on - strand, within CA265_RS04025at 964.221 kb on + strand, within CA265_RS04025

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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960,969 + CA265_RS04015 0.56 -0.6
960,971 + CA265_RS04015 0.56 +0.8
960,971 + CA265_RS04015 0.56 -0.1
960,993 + CA265_RS04015 0.57 +0.2
961,004 + CA265_RS04015 0.57 +0.4
961,005 - CA265_RS04015 0.57 -0.1
961,045 + CA265_RS04015 0.59 +0.4
961,046 - CA265_RS04015 0.59 +0.3
961,046 - CA265_RS04015 0.59 -0.2
961,061 + CA265_RS04015 0.60 +1.7
961,061 + CA265_RS04015 0.60 +0.9
961,061 + CA265_RS04015 0.60 +0.8
961,082 + CA265_RS04015 0.61 +1.3
961,082 + CA265_RS04015 0.61 +0.7
961,095 - CA265_RS04015 0.62 +0.5
961,125 - CA265_RS04015 0.63 -0.1
961,212 + CA265_RS04015 0.67 +0.1
961,263 - CA265_RS04015 0.69 +0.8
961,283 + CA265_RS04015 0.70 -0.0
961,333 - CA265_RS04015 0.72 -0.1
961,333 - CA265_RS04015 0.72 +0.8
961,352 + CA265_RS04015 0.73 +1.0
961,353 - CA265_RS04015 0.73 +0.1
961,353 - CA265_RS04015 0.73 -0.1
961,389 + CA265_RS04015 0.75 +0.9
961,423 + CA265_RS04015 0.76 -1.1
961,498 - CA265_RS04015 0.80 -0.3
961,553 + CA265_RS04015 0.82 +0.8
961,578 + CA265_RS04015 0.83 +0.2
961,584 - CA265_RS04015 0.84 -0.1
961,672 + CA265_RS04015 0.88 +0.8
961,719 - CA265_RS04015 0.90 +0.4
961,740 - +0.3
961,785 - -1.1
961,807 - -0.9
961,807 - -0.1
961,829 + -0.4
961,830 - +0.2
961,836 - -0.4
961,856 + +0.4
961,867 - -0.7
961,974 + +1.0
961,981 + +1.1
962,003 + +0.4
962,053 + +0.6
962,140 + CA265_RS04020 0.15 +1.0
962,141 - CA265_RS04020 0.15 -0.7
962,160 + CA265_RS04020 0.17 +0.6
962,161 - CA265_RS04020 0.17 +1.5
962,162 + CA265_RS04020 0.17 +0.1
962,212 - CA265_RS04020 0.21 -0.3
962,380 - CA265_RS04020 0.34 -0.4
962,405 - CA265_RS04020 0.36 -0.7
962,409 + CA265_RS04020 0.36 +0.7
962,411 + CA265_RS04020 0.36 -0.1
962,411 + CA265_RS04020 0.36 +1.8
962,411 + CA265_RS04020 0.36 +1.4
962,412 - CA265_RS04020 0.36 -1.4
962,413 + CA265_RS04020 0.37 +1.2
962,413 + CA265_RS04020 0.37 +1.1
962,437 - CA265_RS04020 0.38 +0.8
962,459 - CA265_RS04020 0.40 -0.0
962,473 + CA265_RS04020 0.41 +1.0
962,605 - CA265_RS04020 0.51 -0.0
962,607 - CA265_RS04020 0.52 -0.1
962,625 + CA265_RS04020 0.53 +0.4
962,626 - CA265_RS04020 0.53 +1.8
962,637 - CA265_RS04020 0.54 +0.1
962,671 + CA265_RS04020 0.56 -0.5
962,726 + CA265_RS04020 0.61 +1.3
962,727 - CA265_RS04020 0.61 +0.9
962,772 - CA265_RS04020 0.64 -0.4
962,772 - CA265_RS04020 0.64 +0.5
962,774 - CA265_RS04020 0.64 -1.7
962,838 - CA265_RS04020 0.69 +1.1
962,873 - CA265_RS04020 0.72 +0.4
962,935 - CA265_RS04020 0.77 +0.5
962,948 + CA265_RS04020 0.78 +1.1
963,042 + CA265_RS04020 0.85 +0.2
963,043 - CA265_RS04020 0.85 -0.2
963,080 - CA265_RS04020 0.88 +0.8
963,263 + +0.0
963,264 - +0.1
963,465 - -0.7
963,465 - +0.1
963,487 + +1.6
963,498 - +0.1
963,500 - -2.7
963,543 + -0.4
963,670 + -0.9
963,757 + -0.2
963,830 - CA265_RS04025 0.10 +0.1
963,855 + CA265_RS04025 0.11 +0.6
963,888 + CA265_RS04025 0.12 -0.5
963,931 + CA265_RS04025 0.13 -0.5
963,931 + CA265_RS04025 0.13 +0.3
963,932 - CA265_RS04025 0.13 +0.9
964,008 + CA265_RS04025 0.16 -1.0
964,008 + CA265_RS04025 0.16 -0.3
964,009 - CA265_RS04025 0.16 +0.1
964,063 + CA265_RS04025 0.18 -1.7
964,063 + CA265_RS04025 0.18 +0.5
964,064 - CA265_RS04025 0.18 +0.4
964,073 - CA265_RS04025 0.18 +0.1
964,076 - CA265_RS04025 0.18 +0.1
964,076 - CA265_RS04025 0.18 -0.7
964,107 - CA265_RS04025 0.19 -0.2
964,145 + CA265_RS04025 0.20 -0.1
964,146 - CA265_RS04025 0.20 +0.2
964,146 - CA265_RS04025 0.20 -0.8
964,167 - CA265_RS04025 0.21 -0.1
964,204 - CA265_RS04025 0.22 +0.5
964,204 - CA265_RS04025 0.22 -0.9
964,218 - CA265_RS04025 0.22 +1.1
964,221 + CA265_RS04025 0.22 -0.2

Or see this region's nucleotide sequence