Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02835 and SMc02836 are separated by 108 nucleotides SMc02836 and SMc02837 are separated by 17 nucleotides SMc02837 and SMc02838 are separated by 30 nucleotides
SMc02835: SMc02835 - glucokinase, at 183,920 to 184,939
SMc02835
SMc02836: SMc02836 - ABC transporter ATP-binding protein, at 185,048 to 186,853
SMc02836
SMc02837: SMc02837 - dihydrodipicolinate reductase, at 186,871 to 187,689
SMc02837
SMc02838: SMc02838 - phosphoglyceromutase, at 187,720 to 188,355
SMc02838
Position (kb) 185
186
187 Strain fitness (log2 ratio) -1
0
1 at 184.161 kb on + strand, within SMc02835 at 184.162 kb on - strand, within SMc02835 at 184.382 kb on + strand, within SMc02835 at 184.401 kb on + strand, within SMc02835 at 184.433 kb on - strand, within SMc02835 at 184.434 kb on + strand, within SMc02835 at 184.434 kb on + strand, within SMc02835 at 184.434 kb on + strand, within SMc02835 at 184.435 kb on - strand, within SMc02835 at 184.435 kb on - strand, within SMc02835 at 184.435 kb on - strand, within SMc02835 at 184.435 kb on - strand, within SMc02835 at 184.542 kb on - strand, within SMc02835 at 184.664 kb on + strand, within SMc02835 at 184.719 kb on + strand, within SMc02835 at 184.719 kb on + strand, within SMc02835 at 184.719 kb on + strand, within SMc02835 at 184.720 kb on - strand, within SMc02835 at 184.749 kb on + strand, within SMc02835 at 184.750 kb on - strand, within SMc02835 at 184.750 kb on - strand, within SMc02835 at 184.984 kb on + strand at 184.984 kb on + strand at 184.986 kb on + strand at 184.986 kb on + strand at 184.986 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 184,161 + SMc02835 0.24 +1.3 184,162 - SMc02835 0.24 -0.0 184,382 + SMc02835 0.45 +0.5 184,401 + SMc02835 0.47 +1.4 184,433 - SMc02835 0.50 -0.3 184,434 + SMc02835 0.50 +0.6 184,434 + SMc02835 0.50 -1.6 184,434 + SMc02835 0.50 -0.3 184,435 - SMc02835 0.50 -0.9 184,435 - SMc02835 0.50 +0.3 184,435 - SMc02835 0.50 -0.5 184,435 - SMc02835 0.50 -0.4 184,542 - SMc02835 0.61 +0.3 184,664 + SMc02835 0.73 -0.3 184,719 + SMc02835 0.78 -0.2 184,719 + SMc02835 0.78 +0.8 184,719 + SMc02835 0.78 +0.3 184,720 - SMc02835 0.78 +0.1 184,749 + SMc02835 0.81 +0.7 184,750 - SMc02835 0.81 +0.4 184,750 - SMc02835 0.81 -0.8 184,984 + +0.7 184,984 + -0.7 184,986 + -0.1 184,986 + -1.2 184,986 + +1.3
Or see this region's nucleotide sequence