Strain Fitness in Sinorhizobium meliloti 1021 around SMa1664

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1662 and SMa1664 overlap by 4 nucleotidesSMa1664 and SMa1666 are separated by 336 nucleotides SMa1662: SMa1662 - Cation/multidrug efflux pump, at 927,892 to 931,026 SMa1662 SMa1664: SMa1664 - HlyD-family protein, at 931,023 to 932,189 SMa1664 SMa1666: SMa1666 - hypothetical protein, at 932,526 to 933,005 SMa1666 Position (kb) 931 932 933Strain fitness (log2 ratio) -2 -1 0 1 2at 930.244 kb on + strand, within SMa1662at 930.245 kb on - strand, within SMa1662at 930.245 kb on - strand, within SMa1662at 930.276 kb on + strand, within SMa1662at 930.433 kb on + strand, within SMa1662at 930.465 kb on + strand, within SMa1662at 930.466 kb on - strand, within SMa1662at 930.476 kb on + strand, within SMa1662at 930.551 kb on + strand, within SMa1662at 930.552 kb on - strand, within SMa1662at 930.566 kb on - strand, within SMa1662at 930.566 kb on - strand, within SMa1662at 930.593 kb on + strand, within SMa1662at 930.758 kb on + strandat 930.758 kb on + strandat 930.791 kb on + strandat 930.791 kb on + strandat 930.791 kb on + strandat 930.791 kb on + strandat 930.791 kb on + strandat 930.791 kb on + strandat 930.792 kb on - strandat 930.792 kb on - strandat 930.792 kb on - strandat 930.792 kb on - strandat 930.875 kb on + strandat 930.876 kb on - strandat 931.240 kb on - strand, within SMa1664at 931.371 kb on - strand, within SMa1664at 931.454 kb on - strand, within SMa1664at 931.645 kb on + strand, within SMa1664at 931.694 kb on - strand, within SMa1664at 931.907 kb on - strand, within SMa1664at 931.907 kb on - strand, within SMa1664at 932.058 kb on + strand, within SMa1664at 932.058 kb on + strand, within SMa1664at 932.058 kb on + strand, within SMa1664at 932.333 kb on + strandat 932.334 kb on - strandat 932.334 kb on - strandat 932.334 kb on - strandat 932.370 kb on - strandat 932.382 kb on + strandat 932.383 kb on - strandat 932.383 kb on - strandat 932.747 kb on + strand, within SMa1666at 932.811 kb on + strand, within SMa1666at 932.811 kb on + strand, within SMa1666at 932.812 kb on - strand, within SMa1666at 932.812 kb on - strand, within SMa1666at 932.988 kb on + strandat 932.989 kb on - strandat 933.102 kb on + strandat 933.103 kb on - strandat 933.154 kb on + strandat 933.154 kb on + strandat 933.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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930,244 + SMa1662 0.75 -0.1
930,245 - SMa1662 0.75 -0.2
930,245 - SMa1662 0.75 +0.2
930,276 + SMa1662 0.76 +0.4
930,433 + SMa1662 0.81 +0.6
930,465 + SMa1662 0.82 -0.1
930,466 - SMa1662 0.82 +0.0
930,476 + SMa1662 0.82 +0.7
930,551 + SMa1662 0.85 -0.4
930,552 - SMa1662 0.85 -0.7
930,566 - SMa1662 0.85 +0.8
930,566 - SMa1662 0.85 -0.1
930,593 + SMa1662 0.86 +1.2
930,758 + -0.1
930,758 + -0.4
930,791 + -0.6
930,791 + -0.1
930,791 + +0.0
930,791 + -0.3
930,791 + +0.2
930,791 + -0.0
930,792 - +0.1
930,792 - -0.6
930,792 - +0.8
930,792 - +0.7
930,875 + -1.2
930,876 - -0.5
931,240 - SMa1664 0.19 +0.0
931,371 - SMa1664 0.30 +0.9
931,454 - SMa1664 0.37 +0.3
931,645 + SMa1664 0.53 -1.1
931,694 - SMa1664 0.57 -1.6
931,907 - SMa1664 0.76 -0.1
931,907 - SMa1664 0.76 -0.0
932,058 + SMa1664 0.89 -0.3
932,058 + SMa1664 0.89 -0.1
932,058 + SMa1664 0.89 -0.2
932,333 + +0.2
932,334 - -0.3
932,334 - -0.7
932,334 - -0.3
932,370 - +0.9
932,382 + -0.3
932,383 - +0.1
932,383 - +1.9
932,747 + SMa1666 0.46 +0.9
932,811 + SMa1666 0.59 -0.8
932,811 + SMa1666 0.59 -0.4
932,812 - SMa1666 0.60 +0.3
932,812 - SMa1666 0.60 -2.2
932,988 + +0.3
932,989 - +0.4
933,102 + -0.5
933,103 - -0.6
933,154 + +0.1
933,154 + +0.2
933,155 - -0.2

Or see this region's nucleotide sequence