Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1660 and SMa1662 are separated by 436 nucleotides SMa1662 and SMa1664 overlap by 4 nucleotides
SMa1660: SMa1660 - hypothetical protein, at 926,871 to 927,455
SMa1660
SMa1662: SMa1662 - Cation/multidrug efflux pump, at 927,892 to 931,026
SMa1662
SMa1664: SMa1664 - HlyD-family protein, at 931,023 to 932,189
SMa1664
Position (kb) 927
928
929
930
931
932 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 927.098 kb on - strand, within SMa1660 at 927.098 kb on - strand, within SMa1660 at 927.121 kb on + strand, within SMa1660 at 927.253 kb on + strand, within SMa1660 at 927.335 kb on - strand, within SMa1660 at 927.335 kb on - strand, within SMa1660 at 927.368 kb on + strand, within SMa1660 at 927.431 kb on + strand at 927.471 kb on + strand at 927.509 kb on - strand at 927.614 kb on + strand at 927.615 kb on - strand at 927.615 kb on - strand at 927.673 kb on + strand at 927.679 kb on + strand at 927.679 kb on + strand at 927.680 kb on - strand at 927.680 kb on - strand at 927.756 kb on + strand at 927.761 kb on + strand at 927.762 kb on - strand at 927.848 kb on - strand at 927.848 kb on - strand at 927.848 kb on - strand at 927.966 kb on - strand at 928.118 kb on - strand at 928.241 kb on - strand, within SMa1662 at 928.241 kb on - strand, within SMa1662 at 928.262 kb on + strand, within SMa1662 at 928.263 kb on - strand, within SMa1662 at 928.264 kb on + strand, within SMa1662 at 928.264 kb on + strand, within SMa1662 at 928.264 kb on + strand, within SMa1662 at 928.265 kb on - strand, within SMa1662 at 928.364 kb on + strand, within SMa1662 at 928.385 kb on + strand, within SMa1662 at 928.737 kb on - strand, within SMa1662 at 929.027 kb on - strand, within SMa1662 at 929.196 kb on + strand, within SMa1662 at 929.197 kb on - strand, within SMa1662 at 929.197 kb on - strand, within SMa1662 at 929.316 kb on + strand, within SMa1662 at 929.378 kb on + strand, within SMa1662 at 929.407 kb on + strand, within SMa1662 at 929.456 kb on + strand, within SMa1662 at 929.457 kb on - strand, within SMa1662 at 929.842 kb on - strand, within SMa1662 at 929.848 kb on - strand, within SMa1662 at 929.848 kb on - strand, within SMa1662 at 929.864 kb on - strand, within SMa1662 at 929.871 kb on - strand, within SMa1662 at 929.954 kb on + strand, within SMa1662 at 929.954 kb on + strand, within SMa1662 at 930.244 kb on + strand, within SMa1662 at 930.245 kb on - strand, within SMa1662 at 930.245 kb on - strand, within SMa1662 at 930.276 kb on + strand, within SMa1662 at 930.433 kb on + strand, within SMa1662 at 930.465 kb on + strand, within SMa1662 at 930.466 kb on - strand, within SMa1662 at 930.476 kb on + strand, within SMa1662 at 930.551 kb on + strand, within SMa1662 at 930.552 kb on - strand, within SMa1662 at 930.566 kb on - strand, within SMa1662 at 930.566 kb on - strand, within SMa1662 at 930.593 kb on + strand, within SMa1662 at 930.758 kb on + strand at 930.758 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.792 kb on - strand at 930.792 kb on - strand at 930.792 kb on - strand at 930.792 kb on - strand at 930.875 kb on + strand at 930.876 kb on - strand at 931.240 kb on - strand, within SMa1664 at 931.371 kb on - strand, within SMa1664 at 931.454 kb on - strand, within SMa1664 at 931.645 kb on + strand, within SMa1664 at 931.694 kb on - strand, within SMa1664 at 931.907 kb on - strand, within SMa1664 at 931.907 kb on - strand, within SMa1664
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 927,098 - SMa1660 0.39 -1.1 927,098 - SMa1660 0.39 -1.3 927,121 + SMa1660 0.43 +0.6 927,253 + SMa1660 0.65 -0.0 927,335 - SMa1660 0.79 +0.2 927,335 - SMa1660 0.79 -0.3 927,368 + SMa1660 0.85 -0.9 927,431 + +0.5 927,471 + +0.3 927,509 - +0.0 927,614 + -0.6 927,615 - -0.1 927,615 - -0.6 927,673 + -0.1 927,679 + +2.3 927,679 + -0.2 927,680 - -0.1 927,680 - +0.2 927,756 + -0.1 927,761 + -0.4 927,762 - -0.0 927,848 - -0.5 927,848 - +0.7 927,848 - +0.2 927,966 - -0.0 928,118 - +2.9 928,241 - SMa1662 0.11 -0.1 928,241 - SMa1662 0.11 -1.8 928,262 + SMa1662 0.12 +0.1 928,263 - SMa1662 0.12 +0.2 928,264 + SMa1662 0.12 +0.7 928,264 + SMa1662 0.12 -0.2 928,264 + SMa1662 0.12 +0.0 928,265 - SMa1662 0.12 +0.1 928,364 + SMa1662 0.15 -0.9 928,385 + SMa1662 0.16 -0.1 928,737 - SMa1662 0.27 -0.4 929,027 - SMa1662 0.36 +0.0 929,196 + SMa1662 0.42 -0.3 929,197 - SMa1662 0.42 -0.2 929,197 - SMa1662 0.42 -0.8 929,316 + SMa1662 0.45 +0.1 929,378 + SMa1662 0.47 +0.4 929,407 + SMa1662 0.48 +0.5 929,456 + SMa1662 0.50 +0.6 929,457 - SMa1662 0.50 -0.4 929,842 - SMa1662 0.62 +0.7 929,848 - SMa1662 0.62 -0.0 929,848 - SMa1662 0.62 +1.1 929,864 - SMa1662 0.63 -0.6 929,871 - SMa1662 0.63 -0.0 929,954 + SMa1662 0.66 +1.0 929,954 + SMa1662 0.66 -0.7 930,244 + SMa1662 0.75 -0.1 930,245 - SMa1662 0.75 -0.2 930,245 - SMa1662 0.75 +0.2 930,276 + SMa1662 0.76 +0.4 930,433 + SMa1662 0.81 +0.6 930,465 + SMa1662 0.82 -0.1 930,466 - SMa1662 0.82 +0.0 930,476 + SMa1662 0.82 +0.7 930,551 + SMa1662 0.85 -0.4 930,552 - SMa1662 0.85 -0.7 930,566 - SMa1662 0.85 +0.8 930,566 - SMa1662 0.85 -0.1 930,593 + SMa1662 0.86 +1.2 930,758 + -0.1 930,758 + -0.4 930,791 + -0.6 930,791 + -0.1 930,791 + +0.0 930,791 + -0.3 930,791 + +0.2 930,791 + -0.0 930,792 - +0.1 930,792 - -0.6 930,792 - +0.8 930,792 - +0.7 930,875 + -1.2 930,876 - -0.5 931,240 - SMa1664 0.19 +0.0 931,371 - SMa1664 0.30 +0.9 931,454 - SMa1664 0.37 +0.3 931,645 + SMa1664 0.53 -1.1 931,694 - SMa1664 0.57 -1.6 931,907 - SMa1664 0.76 -0.1 931,907 - SMa1664 0.76 -0.0
Or see this region's nucleotide sequence