Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21497 and SM_b21498 are separated by 3 nucleotides SM_b21498 and SM_b21499 are separated by 2 nucleotides
SM_b21497: SM_b21497 - acriflavin resistance protein, at 1,418,498 to 1,419,619
_b21497
SM_b21498: SM_b21498 - acriflavin resistance protein, at 1,419,623 to 1,422,856
_b21498
SM_b21499: SM_b21499 - hypothetical protein, at 1,422,859 to 1,425,018
_b21499
Position (kb)
1419
1420
1421
1422
1423 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1418.783 kb on + strand, within SM_b21497 at 1418.890 kb on + strand, within SM_b21497 at 1418.891 kb on - strand, within SM_b21497 at 1419.000 kb on - strand, within SM_b21497 at 1419.116 kb on + strand, within SM_b21497 at 1419.116 kb on + strand, within SM_b21497 at 1419.116 kb on + strand, within SM_b21497 at 1419.117 kb on - strand, within SM_b21497 at 1419.146 kb on + strand, within SM_b21497 at 1419.249 kb on + strand, within SM_b21497 at 1419.250 kb on - strand, within SM_b21497 at 1419.546 kb on + strand at 1419.547 kb on - strand at 1419.854 kb on + strand at 1419.887 kb on + strand at 1419.888 kb on - strand at 1419.945 kb on + strand at 1419.945 kb on + strand at 1419.946 kb on - strand at 1420.094 kb on + strand, within SM_b21498 at 1420.094 kb on + strand, within SM_b21498 at 1420.094 kb on + strand, within SM_b21498 at 1420.173 kb on - strand, within SM_b21498 at 1420.502 kb on + strand, within SM_b21498 at 1420.503 kb on - strand, within SM_b21498 at 1420.595 kb on + strand, within SM_b21498 at 1420.596 kb on - strand, within SM_b21498 at 1420.596 kb on - strand, within SM_b21498 at 1420.596 kb on - strand, within SM_b21498 at 1420.596 kb on - strand, within SM_b21498 at 1420.596 kb on - strand, within SM_b21498 at 1420.596 kb on - strand, within SM_b21498 at 1420.596 kb on - strand, within SM_b21498 at 1420.607 kb on + strand, within SM_b21498 at 1420.608 kb on - strand, within SM_b21498 at 1420.654 kb on + strand, within SM_b21498 at 1420.655 kb on - strand, within SM_b21498 at 1421.195 kb on + strand, within SM_b21498 at 1421.771 kb on + strand, within SM_b21498 at 1421.796 kb on - strand, within SM_b21498 at 1421.883 kb on - strand, within SM_b21498 at 1421.883 kb on - strand, within SM_b21498 at 1421.886 kb on - strand, within SM_b21498 at 1421.886 kb on - strand, within SM_b21498 at 1421.886 kb on - strand, within SM_b21498 at 1421.986 kb on - strand, within SM_b21498 at 1421.986 kb on - strand, within SM_b21498 at 1422.038 kb on + strand, within SM_b21498 at 1422.068 kb on + strand, within SM_b21498 at 1422.069 kb on - strand, within SM_b21498 at 1422.179 kb on + strand, within SM_b21498 at 1422.269 kb on + strand, within SM_b21498 at 1422.270 kb on - strand, within SM_b21498 at 1422.291 kb on - strand, within SM_b21498 at 1422.392 kb on + strand, within SM_b21498 at 1422.392 kb on + strand, within SM_b21498 at 1422.393 kb on - strand, within SM_b21498 at 1422.689 kb on + strand at 1422.689 kb on + strand at 1422.690 kb on - strand at 1422.860 kb on + strand at 1422.879 kb on - strand at 1423.025 kb on + strand at 1423.025 kb on + strand at 1423.025 kb on + strand at 1423.026 kb on - strand at 1423.272 kb on + strand, within SM_b21499 at 1423.501 kb on + strand, within SM_b21499 at 1423.502 kb on - strand, within SM_b21499 at 1423.502 kb on - strand, within SM_b21499 at 1423.582 kb on - strand, within SM_b21499 at 1423.582 kb on - strand, within SM_b21499 at 1423.670 kb on + strand, within SM_b21499 at 1423.675 kb on + strand, within SM_b21499 at 1423.675 kb on + strand, within SM_b21499 at 1423.772 kb on + strand, within SM_b21499 at 1423.830 kb on - strand, within SM_b21499
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 1,418,783 + SM_b21497 0.25 +1.0 1,418,890 + SM_b21497 0.35 +0.5 1,418,891 - SM_b21497 0.35 +0.6 1,419,000 - SM_b21497 0.45 -0.5 1,419,116 + SM_b21497 0.55 +1.0 1,419,116 + SM_b21497 0.55 +0.0 1,419,116 + SM_b21497 0.55 -0.6 1,419,117 - SM_b21497 0.55 +0.8 1,419,146 + SM_b21497 0.58 +1.1 1,419,249 + SM_b21497 0.67 +0.2 1,419,250 - SM_b21497 0.67 +0.2 1,419,546 + -0.6 1,419,547 - +0.9 1,419,854 + +0.2 1,419,887 + +1.4 1,419,888 - +0.1 1,419,945 + +0.3 1,419,945 + -0.2 1,419,946 - +0.2 1,420,094 + SM_b21498 0.15 -0.4 1,420,094 + SM_b21498 0.15 +0.2 1,420,094 + SM_b21498 0.15 -0.1 1,420,173 - SM_b21498 0.17 +0.1 1,420,502 + SM_b21498 0.27 -0.2 1,420,503 - SM_b21498 0.27 -0.2 1,420,595 + SM_b21498 0.30 +0.4 1,420,596 - SM_b21498 0.30 -0.6 1,420,596 - SM_b21498 0.30 +0.1 1,420,596 - SM_b21498 0.30 +0.3 1,420,596 - SM_b21498 0.30 -0.6 1,420,596 - SM_b21498 0.30 +0.4 1,420,596 - SM_b21498 0.30 -2.4 1,420,596 - SM_b21498 0.30 -0.1 1,420,607 + SM_b21498 0.30 +0.1 1,420,608 - SM_b21498 0.30 -1.2 1,420,654 + SM_b21498 0.32 -1.6 1,420,655 - SM_b21498 0.32 -0.2 1,421,195 + SM_b21498 0.49 +0.0 1,421,771 + SM_b21498 0.66 -0.7 1,421,796 - SM_b21498 0.67 -0.1 1,421,883 - SM_b21498 0.70 +0.0 1,421,883 - SM_b21498 0.70 +1.7 1,421,886 - SM_b21498 0.70 -0.4 1,421,886 - SM_b21498 0.70 -0.1 1,421,886 - SM_b21498 0.70 +0.2 1,421,986 - SM_b21498 0.73 -0.6 1,421,986 - SM_b21498 0.73 +0.0 1,422,038 + SM_b21498 0.75 +0.2 1,422,068 + SM_b21498 0.76 -0.5 1,422,069 - SM_b21498 0.76 -1.5 1,422,179 + SM_b21498 0.79 -0.1 1,422,269 + SM_b21498 0.82 -0.4 1,422,270 - SM_b21498 0.82 -0.3 1,422,291 - SM_b21498 0.82 +0.6 1,422,392 + SM_b21498 0.86 +0.2 1,422,392 + SM_b21498 0.86 +0.1 1,422,393 - SM_b21498 0.86 +1.4 1,422,689 + +0.2 1,422,689 + -0.3 1,422,690 - -0.4 1,422,860 + -0.1 1,422,879 - -0.7 1,423,025 + +2.0 1,423,025 + +0.7 1,423,025 + -0.1 1,423,026 - +0.3 1,423,272 + SM_b21499 0.19 +0.9 1,423,501 + SM_b21499 0.30 -0.2 1,423,502 - SM_b21499 0.30 -0.1 1,423,502 - SM_b21499 0.30 +0.1 1,423,582 - SM_b21499 0.33 -0.1 1,423,582 - SM_b21499 0.33 -0.8 1,423,670 + SM_b21499 0.38 +0.3 1,423,675 + SM_b21499 0.38 +0.4 1,423,675 + SM_b21499 0.38 +0.3 1,423,772 + SM_b21499 0.42 -0.2 1,423,830 - SM_b21499 0.45 +0.2
Or see this region's nucleotide sequence